Wall clock time and date at job start Tue Mar 31 2020 14:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86802 * 120.00095 * 2 1 4 4 H 1.48490 * 109.47393 * 270.00244 * 3 2 1 5 5 H 1.48502 * 109.46973 * 30.00749 * 3 2 1 6 6 H 1.48497 * 109.46647 * 150.00122 * 3 2 1 7 7 C 1.39926 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00070 * 196.79169 * 7 2 1 9 9 C 1.41409 * 119.99983 * 16.79157 * 7 2 1 10 10 C 1.40774 * 120.21294 * 25.18321 * 9 7 2 11 11 C 1.37640 * 119.89519 * 180.02562 * 10 9 7 12 12 C 1.38528 * 120.32439 * 0.02562 * 11 10 9 13 13 C 1.39271 * 120.42628 * 359.97438 * 12 11 10 14 14 N 1.39851 * 119.95197 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00033 * 145.78591 * 14 13 12 16 16 O 1.21608 * 119.99657 * 354.88577 * 15 14 13 17 17 C 1.47484 * 120.00150 * 174.88741 * 15 14 13 18 18 C 1.40104 * 119.93625 * 359.97438 * 17 15 14 19 19 C 1.36291 * 120.38846 * 180.02562 * 18 17 15 20 20 C 1.39854 * 120.04249 * 359.97438 * 19 18 17 21 21 N 1.35820 * 133.51627 * 180.02562 * 20 19 18 22 22 C 1.30774 * 108.79929 * 179.97438 * 21 20 19 23 23 O 1.35095 * 124.92623 * 179.97438 * 22 21 20 24 24 O 1.34327 * 110.15757 * 359.76078 * 22 21 20 25 25 C 1.35315 * 108.12402 * 0.39086 * 24 22 21 26 26 C 1.38101 * 133.76123 * 179.89963 * 25 24 22 27 27 C 1.38306 * 120.09650 * 0.27831 * 13 12 11 28 28 H 0.97001 * 119.99887 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.05522 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.84490 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.79043 * 180.02562 * 12 11 10 32 32 H 0.97000 * 120.00190 * 325.78618 * 14 13 12 33 33 H 1.08007 * 119.80740 * 0.02562 * 18 17 15 34 34 H 1.08005 * 119.97592 * 180.02562 * 19 18 17 35 35 H 0.96706 * 114.00007 * 90.02194 * 23 22 21 36 36 H 1.08002 * 120.18173 * 359.70973 * 26 25 24 37 37 H 1.08000 * 120.15773 * 179.70036 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.3999 5 1 1.4399 2.6526 0.7002 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2697 9 6 1.3461 -2.4102 -0.3549 10 6 0.2109 -2.3732 -1.1867 11 6 -0.4285 -3.5436 -1.5270 12 6 0.0390 -4.7590 -1.0545 13 6 1.1607 -4.8111 -0.2308 14 7 1.6238 -6.0435 0.2410 15 6 2.9453 -6.2465 0.4114 16 8 3.7407 -5.3931 0.0679 17 6 3.4267 -7.5034 1.0143 18 6 2.5091 -8.4854 1.4100 19 6 2.9437 -9.6501 1.9686 20 6 4.3127 -9.8717 2.1497 21 7 5.0334 -10.9022 2.6630 22 6 6.3043 -10.6008 2.5986 23 8 7.3104 -11.3970 3.0217 24 8 6.4648 -9.3868 2.0464 25 6 5.2397 -8.8918 1.7548 26 6 4.7957 -7.7125 1.1895 27 6 1.8137 -3.6454 0.1264 28 1 -0.4850 0.8401 0.0004 29 1 -0.1581 -1.4280 -1.5566 30 1 -1.2991 -3.5143 -2.1656 31 1 -0.4692 -5.6720 -1.3273 32 1 0.9940 -6.7523 0.4456 33 1 1.4510 -8.3185 1.2716 34 1 2.2305 -10.4028 2.2709 35 1 7.6500 -11.9960 2.3427 36 1 5.5039 -6.9564 0.8842 37 1 2.6808 -3.6843 0.7691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525933853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:59 Heat of formation + Delta-G solvation = -1.420491 kcal Electronic energy + Delta-G solvation = -25098.783954 eV Core-core repulsion = 21194.251927 eV Total energy + Delta-G solvation = -3904.532028 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.64965 -40.17845 -38.67378 -37.82883 -36.99246 -34.96885 -34.60797 -33.12613 -31.12706 -30.20890 -29.85355 -27.93947 -25.34640 -24.47724 -23.89293 -22.36309 -21.79409 -20.94173 -20.27094 -19.56594 -18.38139 -18.09368 -17.80117 -17.28145 -16.13590 -15.63159 -15.50111 -15.15126 -14.74460 -14.70180 -14.50064 -14.41586 -14.05120 -13.61196 -13.17697 -12.90399 -12.75598 -12.68914 -12.18762 -11.84507 -11.71015 -11.60996 -11.22095 -11.14976 -10.96264 -10.90172 -10.47746 -10.26379 -9.72921 -9.53822 -9.28141 -9.13198 -9.06240 -8.78563 -7.48340 -6.97251 -6.73596 -4.35904 -0.02099 0.80920 1.40886 1.76395 2.57973 2.80902 2.95818 3.07721 3.09636 3.13903 3.21411 3.46038 3.69104 3.95718 4.04220 4.42937 4.57541 4.62497 4.67859 4.83627 4.92315 5.25986 5.55836 5.66667 5.69383 5.82808 5.87909 6.10942 6.21884 6.35208 6.54949 6.65454 6.96391 7.00315 7.04265 7.06425 7.22900 7.49630 7.67488 7.92235 8.05998 8.09819 8.19922 8.52717 8.66428 8.91347 8.95439 10.19873 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.002486 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.393904 B =11260.920807 C =12284.011267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.259 4.259 13 C 0.149 3.851 14 N -0.657 5.657 15 C 0.550 3.450 16 O -0.507 6.507 17 C -0.096 4.096 18 C -0.085 4.085 19 C -0.064 4.064 20 C 0.048 3.952 21 N -0.466 5.466 22 C 0.423 3.577 23 O -0.407 6.407 24 O -0.220 6.220 25 C 0.011 3.989 26 C -0.026 4.026 27 C -0.209 4.209 28 H 0.280 0.720 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.421 0.579 36 H 0.154 0.846 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -18.778 2.779 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.189 4.189 11 C -0.111 4.111 12 C -0.281 4.281 13 C 0.058 3.942 14 N -0.301 5.301 15 C 0.336 3.664 16 O -0.382 6.382 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.083 4.083 20 C -0.065 4.065 21 N -0.209 5.209 22 C 0.173 3.827 23 O -0.215 6.215 24 O -0.113 6.113 25 C -0.039 4.039 26 C -0.046 4.046 27 C -0.230 4.230 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.234 0.766 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.283 0.717 36 H 0.172 0.828 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.405 -18.301 3.347 19.676 hybrid contribution 0.635 0.517 -0.404 0.914 sum 7.040 -17.783 2.943 19.351 Atomic orbital electron populations 1.69824 1.07529 1.29168 1.35486 1.25907 0.94753 1.01309 0.92234 0.86294 0.80526 0.80476 0.79337 1.19256 1.20350 1.18580 1.19595 0.97826 0.90925 1.40348 0.90294 1.17491 0.90917 0.91619 0.88349 1.21370 0.99259 0.96921 1.01366 1.20466 0.98548 0.92670 0.99452 1.20035 1.02290 0.96986 1.08754 1.17391 0.96365 0.82992 0.97478 1.43289 1.06505 1.15432 1.64860 1.17877 0.82920 0.86056 0.79537 1.90869 1.54448 1.44510 1.48389 1.19846 0.92468 0.95706 1.01974 1.20984 1.00162 0.92245 0.97054 1.19935 0.91403 0.97918 0.99078 1.19766 0.95579 0.90316 1.00819 1.71017 1.00509 1.26903 1.22499 1.22519 0.86673 0.81693 0.91778 1.84894 1.48607 1.50109 1.37920 1.84514 1.31184 1.31431 1.64175 1.19749 0.81380 0.97899 1.04829 1.19917 0.95301 0.93253 0.96080 1.20982 1.04358 0.90968 1.06735 0.90903 0.86259 0.88947 0.89173 0.76600 0.83759 0.83674 0.71747 0.82814 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.45 10.94 55.55 0.61 -19.85 16 2 C 0.08 1.91 5.16 -17.35 -0.09 1.82 16 3 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 8 H 0.08 2.11 7.90 -52.49 -0.41 1.70 16 9 C 0.12 3.23 5.57 -106.85 -0.59 2.63 16 10 C -0.17 -4.37 8.69 -38.84 -0.34 -4.71 16 11 C -0.09 -2.10 10.02 -39.69 -0.40 -2.50 16 12 C -0.26 -5.51 9.97 -39.09 -0.39 -5.90 16 13 C 0.15 3.26 6.25 -83.79 -0.52 2.74 16 14 N -0.66 -11.10 5.28 -10.86 -0.06 -11.15 16 15 C 0.55 9.46 7.48 -12.49 -0.09 9.37 16 16 O -0.51 -10.90 14.08 5.27 0.07 -10.82 16 17 C -0.10 -1.26 5.88 -104.92 -0.62 -1.88 16 18 C -0.08 -0.83 9.46 -39.58 -0.37 -1.21 16 19 C -0.06 -0.62 10.03 -39.68 -0.40 -1.02 16 20 C 0.05 0.57 7.23 -84.62 -0.61 -0.04 16 21 N -0.47 -5.45 11.36 -12.73 -0.14 -5.59 16 22 C 0.42 4.31 9.54 52.31 0.50 4.80 16 23 O -0.41 -2.65 13.62 -40.29 -0.55 -3.20 16 24 O -0.22 -2.57 10.79 -20.53 -0.22 -2.80 16 25 C 0.01 0.14 7.40 -38.76 -0.29 -0.15 16 26 C -0.03 -0.33 9.60 -39.13 -0.38 -0.71 16 27 C -0.21 -5.30 8.39 -38.67 -0.32 -5.62 16 28 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 29 H 0.12 3.16 6.17 -52.48 -0.32 2.84 16 30 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 31 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.40 4.98 6.83 -40.82 -0.28 4.71 16 33 H 0.14 1.02 6.38 -52.48 -0.33 0.69 16 34 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 35 H 0.42 0.10 9.06 45.56 0.41 0.51 16 36 H 0.15 2.02 7.64 -52.49 -0.40 1.62 16 37 H 0.11 2.77 6.48 -52.49 -0.34 2.43 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -33.40 329.60 -7.69 -41.09 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -2.08 Total: 8.54 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -5.26 Total: -15.11 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.41 Total: -36.60 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.70 Total: -16.82 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.40 -7.69 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525933853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.674 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds