Wall clock time and date at job start Tue Mar 31 2020 14:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86802 * 120.00095 * 2 1 4 4 H 1.48490 * 109.47393 * 270.00244 * 3 2 1 5 5 H 1.48502 * 109.46973 * 30.00749 * 3 2 1 6 6 H 1.48497 * 109.46647 * 150.00122 * 3 2 1 7 7 C 1.39926 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00070 * 196.79169 * 7 2 1 9 9 C 1.41409 * 119.99983 * 16.79157 * 7 2 1 10 10 C 1.40774 * 120.21294 * 25.18321 * 9 7 2 11 11 C 1.37640 * 119.89519 * 180.02562 * 10 9 7 12 12 C 1.38528 * 120.32439 * 0.02562 * 11 10 9 13 13 C 1.39271 * 120.42628 * 359.97438 * 12 11 10 14 14 N 1.39851 * 119.95197 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00033 * 145.78591 * 14 13 12 16 16 O 1.21608 * 119.99657 * 354.88577 * 15 14 13 17 17 C 1.47484 * 120.00150 * 174.88741 * 15 14 13 18 18 C 1.40104 * 119.93625 * 359.97438 * 17 15 14 19 19 C 1.36291 * 120.38846 * 180.02562 * 18 17 15 20 20 C 1.39854 * 120.04249 * 359.97438 * 19 18 17 21 21 N 1.35820 * 133.51627 * 180.02562 * 20 19 18 22 22 C 1.30774 * 108.79929 * 179.97438 * 21 20 19 23 23 O 1.35095 * 124.92623 * 179.97438 * 22 21 20 24 24 O 1.34327 * 110.15757 * 359.76078 * 22 21 20 25 25 C 1.35315 * 108.12402 * 0.39086 * 24 22 21 26 26 C 1.38101 * 133.76123 * 179.89963 * 25 24 22 27 27 C 1.38306 * 120.09650 * 0.27831 * 13 12 11 28 28 H 0.97001 * 119.99887 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.05522 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.84490 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.79043 * 180.02562 * 12 11 10 32 32 H 0.97000 * 120.00190 * 325.78618 * 14 13 12 33 33 H 1.08007 * 119.80740 * 0.02562 * 18 17 15 34 34 H 1.08005 * 119.97592 * 180.02562 * 19 18 17 35 35 H 0.96706 * 114.00007 * 90.02194 * 23 22 21 36 36 H 1.08002 * 120.18173 * 359.70973 * 26 25 24 37 37 H 1.08000 * 120.15773 * 179.70036 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.3999 5 1 1.4399 2.6526 0.7002 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2697 9 6 1.3461 -2.4102 -0.3549 10 6 0.2109 -2.3732 -1.1867 11 6 -0.4285 -3.5436 -1.5270 12 6 0.0390 -4.7590 -1.0545 13 6 1.1607 -4.8111 -0.2308 14 7 1.6238 -6.0435 0.2410 15 6 2.9453 -6.2465 0.4114 16 8 3.7407 -5.3931 0.0679 17 6 3.4267 -7.5034 1.0143 18 6 2.5091 -8.4854 1.4100 19 6 2.9437 -9.6501 1.9686 20 6 4.3127 -9.8717 2.1497 21 7 5.0334 -10.9022 2.6630 22 6 6.3043 -10.6008 2.5986 23 8 7.3104 -11.3970 3.0217 24 8 6.4648 -9.3868 2.0464 25 6 5.2397 -8.8918 1.7548 26 6 4.7957 -7.7125 1.1895 27 6 1.8137 -3.6454 0.1264 28 1 -0.4850 0.8401 0.0004 29 1 -0.1581 -1.4280 -1.5566 30 1 -1.2991 -3.5143 -2.1656 31 1 -0.4692 -5.6720 -1.3273 32 1 0.9940 -6.7523 0.4456 33 1 1.4510 -8.3185 1.2716 34 1 2.2305 -10.4028 2.2709 35 1 7.6500 -11.9960 2.3427 36 1 5.5039 -6.9564 0.8842 37 1 2.6808 -3.6843 0.7691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525933853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:58 Heat of formation + Delta-G solvation = -27.852817 kcal Electronic energy + Delta-G solvation = -25099.930146 eV Core-core repulsion = 21194.251927 eV Total energy + Delta-G solvation = -3905.678219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.50068 -41.54722 -39.59322 -38.98248 -38.31015 -36.29706 -35.85246 -34.88559 -32.01501 -31.73969 -31.36972 -29.47607 -27.25898 -25.56041 -24.75562 -23.41714 -23.05458 -22.69624 -21.68710 -20.41943 -19.65302 -19.45866 -18.78861 -18.29862 -17.53930 -17.05231 -16.96335 -16.47882 -16.18948 -16.06227 -15.67248 -15.36861 -15.17133 -14.90569 -14.64769 -14.47842 -13.98992 -13.65731 -13.53635 -13.35827 -13.04431 -12.93248 -12.77645 -12.68218 -12.51348 -12.17769 -12.00044 -11.77428 -11.53519 -11.22700 -10.95135 -10.77278 -10.13387 -9.69633 -9.38717 -8.76050 -8.60569 -6.36324 -0.93068 -0.03476 0.59517 0.82059 0.97573 1.06847 1.36629 1.49361 1.49867 1.82467 2.01070 2.21226 2.30645 2.54683 2.75352 3.18675 3.51192 3.72395 3.74048 3.83075 3.86262 4.10425 4.48150 4.53450 4.65457 4.73630 4.79234 4.97832 5.01137 5.03207 5.10480 5.12674 5.22704 5.30400 5.35007 5.74504 5.85923 6.09153 6.11281 6.13366 6.25106 6.34069 6.55710 6.68911 6.94022 7.01098 7.20295 8.33551 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.002486 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.393904 B =11260.920807 C =12284.011267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.091 4.091 12 C -0.244 4.244 13 C 0.157 3.843 14 N -0.644 5.644 15 C 0.551 3.449 16 O -0.559 6.559 17 C -0.108 4.108 18 C -0.067 4.067 19 C -0.055 4.055 20 C 0.048 3.952 21 N -0.485 5.485 22 C 0.438 3.562 23 O -0.403 6.403 24 O -0.231 6.231 25 C -0.007 4.007 26 C -0.033 4.033 27 C -0.236 4.236 28 H 0.289 0.711 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.424 0.576 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.449 0.551 36 H 0.138 0.862 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -21.505 2.972 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.532 4.532 8 H 0.080 0.920 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.110 4.110 12 C -0.265 4.265 13 C 0.064 3.936 14 N -0.290 5.290 15 C 0.340 3.660 16 O -0.438 6.438 17 C -0.112 4.112 18 C -0.087 4.087 19 C -0.074 4.074 20 C -0.065 4.065 21 N -0.229 5.229 22 C 0.189 3.811 23 O -0.216 6.216 24 O -0.125 6.125 25 C -0.057 4.057 26 C -0.053 4.053 27 C -0.258 4.258 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.264 0.736 33 H 0.196 0.804 34 H 0.198 0.802 35 H 0.316 0.684 36 H 0.156 0.844 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.145 -21.111 3.538 22.015 hybrid contribution 1.110 1.072 -0.422 1.600 sum 6.255 -20.039 3.115 21.223 Atomic orbital electron populations 1.69850 1.08623 1.30523 1.35697 1.26664 0.95606 1.04132 0.91268 0.85243 0.78914 0.76143 0.79620 1.18484 1.18598 1.19017 1.19731 0.97487 0.92734 1.43256 0.92012 1.17826 0.92021 0.92354 0.89311 1.21335 0.99918 0.97734 1.02607 1.20859 0.98934 0.92149 0.99074 1.20508 1.01268 0.98239 1.06509 1.17443 0.95798 0.83809 0.96509 1.43102 1.07098 1.14410 1.64406 1.18476 0.82421 0.86769 0.78320 1.90853 1.55737 1.46698 1.50530 1.19463 0.93012 0.94832 1.03888 1.21250 1.01047 0.91002 0.95362 1.20310 0.91013 0.98254 0.97790 1.20170 0.96461 0.89869 1.00040 1.71062 1.00999 1.27055 1.23785 1.22781 0.87254 0.81284 0.89747 1.84873 1.47599 1.50011 1.39087 1.84513 1.31198 1.32243 1.64557 1.19688 0.82013 0.98072 1.05907 1.19809 0.95395 0.93478 0.96632 1.20956 1.04646 0.92322 1.07885 0.90002 0.87807 0.85717 0.84439 0.73617 0.80350 0.80247 0.68402 0.84384 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.58 10.94 21.82 0.24 -43.34 16 2 C 0.04 2.01 5.16 85.25 0.44 2.45 16 3 Si 0.98 40.12 29.59 68.60 2.03 42.15 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.50 -29.08 9.05 23.46 0.21 -28.86 16 8 H 0.06 3.61 7.90 -2.91 -0.02 3.59 16 9 C 0.09 5.00 5.57 -21.31 -0.12 4.88 16 10 C -0.20 -10.39 8.69 22.75 0.20 -10.19 16 11 C -0.09 -4.03 10.02 22.20 0.22 -3.81 16 12 C -0.24 -9.71 9.97 22.59 0.23 -9.48 16 13 C 0.16 6.78 6.25 38.13 0.24 7.02 16 14 N -0.64 -20.72 5.28 -306.53 -1.62 -22.33 16 15 C 0.55 19.05 7.48 86.68 0.65 19.70 16 16 O -0.56 -25.40 14.08 -4.06 -0.06 -25.46 16 17 C -0.11 -2.75 5.88 -20.06 -0.12 -2.87 16 18 C -0.07 -1.10 9.46 22.27 0.21 -0.89 16 19 C -0.06 -0.86 10.03 22.21 0.22 -0.64 16 20 C 0.05 1.02 7.23 39.48 0.29 1.31 16 21 N -0.48 -10.28 11.36 -422.44 -4.80 -15.08 16 22 C 0.44 8.17 9.54 130.40 1.24 9.41 16 23 O -0.40 -4.28 13.62 -61.43 -0.84 -5.11 16 24 O -0.23 -5.28 10.79 9.28 0.10 -5.18 16 25 C -0.01 -0.18 7.40 22.80 0.17 -0.01 16 26 C -0.03 -0.88 9.60 22.56 0.22 -0.67 16 27 C -0.24 -12.55 8.39 22.86 0.19 -12.36 16 28 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 29 H 0.10 5.72 6.17 -2.91 -0.02 5.70 16 30 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 31 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.42 9.01 6.83 -92.71 -0.63 8.38 16 33 H 0.18 1.62 6.38 -2.91 -0.02 1.60 16 34 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.45 -1.05 9.06 -74.05 -0.67 -1.72 16 36 H 0.14 3.97 7.64 -2.91 -0.02 3.95 16 37 H 0.08 4.72 6.48 -2.91 -0.02 4.70 16 Total: -1.00 -78.24 329.60 -0.58 -78.82 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.12 Total: 20.52 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 4.49 Total: -25.01 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -6.18 Total: -80.74 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.79 Total: -35.74 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -78.24 -0.58 -78.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525933853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.968 kcal (2) G-P(sol) polarization free energy of solvation -78.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds