Wall clock time and date at job start Tue Mar 31 2020 14:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99846 * 2 1 4 4 H 1.48504 * 109.47454 * 240.00459 * 3 2 1 5 5 H 1.48503 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47285 * 120.00424 * 3 2 1 7 7 C 1.38652 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99865 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99586 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99891 * 185.40450 * 9 7 2 11 11 C 1.38960 * 120.03512 * 185.92207 * 10 9 7 12 12 C 1.38131 * 120.07940 * 179.97438 * 11 10 9 13 13 C 1.38189 * 120.14249 * 359.70803 * 12 11 10 14 14 C 1.38958 * 120.06338 * 0.55115 * 13 12 11 15 15 N 1.39773 * 120.04021 * 179.74489 * 14 13 12 16 16 C 1.34779 * 120.00112 * 326.11302 * 15 14 13 17 17 O 1.21659 * 119.99751 * 354.79184 * 16 15 14 18 18 C 1.47015 * 119.99947 * 174.78649 * 16 15 14 19 19 O 1.34555 * 127.10879 * 359.97438 * 18 16 15 20 20 N 1.21058 * 113.49039 * 180.02562 * 19 18 16 21 21 C 1.31098 * 112.49374 * 0.02562 * 20 19 18 22 22 C 1.41232 * 136.57150 * 179.97438 * 21 20 19 23 23 C 1.35612 * 119.45393 * 179.97438 * 22 21 20 24 24 C 1.39822 * 122.00655 * 0.02562 * 23 22 21 25 25 C 1.35943 * 121.68939 * 359.75398 * 24 23 22 26 26 C 1.39226 * 127.10912 * 180.02562 * 18 16 15 27 27 C 1.38731 * 120.03090 * 5.90609 * 10 9 7 28 28 H 0.96996 * 119.99942 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.95813 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.92623 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.96615 * 180.27208 * 13 12 11 32 32 H 0.97009 * 120.00062 * 146.10962 * 15 14 13 33 33 H 1.08000 * 120.26995 * 0.02576 * 22 21 20 34 34 H 1.08001 * 118.99276 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.15700 * 179.97438 * 24 23 22 36 36 H 1.08002 * 120.29851 * 180.02562 * 25 24 23 37 37 H 1.08002 * 120.07021 * 0.04058 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6966 -1.2126 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5042 0.1129 11 6 1.4546 -4.7449 -0.0036 12 6 2.2014 -5.9013 0.1111 13 6 3.5629 -5.8285 0.3359 14 6 4.1831 -4.5911 0.4587 15 7 5.5594 -4.5182 0.6913 16 6 6.1672 -5.4601 1.4396 17 8 5.5057 -6.3197 1.9905 18 6 7.6296 -5.4488 1.5898 19 8 8.4947 -4.5721 1.0479 20 7 9.6498 -4.7946 1.3338 21 6 9.7817 -5.8443 2.1080 22 6 10.8471 -6.5370 2.7241 23 6 10.5818 -7.6272 3.4858 24 6 9.2787 -8.0937 3.6835 25 6 8.2057 -7.4737 3.1247 26 6 8.4058 -6.3435 2.3216 27 6 3.4351 -3.4275 0.3447 28 1 -0.4850 0.8400 0.0004 29 1 0.3914 -4.8051 -0.1839 30 1 1.7208 -6.8642 0.0207 31 1 4.1448 -6.7344 0.4207 32 1 6.0771 -3.7896 0.3142 33 1 11.8647 -6.2006 2.5905 34 1 11.4023 -8.1515 3.9531 35 1 9.1201 -8.9670 4.2989 36 1 7.2085 -7.8532 3.2928 37 1 3.9153 -2.4644 0.4360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001540997652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:05 Heat of formation + Delta-G solvation = 60.407912 kcal Electronic energy + Delta-G solvation = -25316.383452 eV Core-core repulsion = 21414.532505 eV Total energy + Delta-G solvation = -3901.850947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.08261 -40.33739 -38.85272 -38.65089 -36.56015 -34.50945 -33.24260 -32.65563 -32.27658 -30.75446 -29.40893 -28.62729 -25.75597 -25.31197 -23.92386 -23.75087 -21.93212 -21.38356 -20.17747 -18.98728 -18.41716 -18.13049 -17.99321 -17.45398 -16.51120 -15.79756 -15.52923 -15.26655 -15.00532 -14.66976 -14.48817 -14.25925 -14.07385 -13.87721 -13.63358 -13.08644 -13.05654 -12.60152 -12.47619 -12.44892 -11.85819 -11.63633 -11.29743 -11.17053 -11.04819 -10.97915 -10.88719 -10.50101 -10.33767 -9.88023 -9.83970 -9.53661 -8.85032 -8.46316 -7.84683 -7.24872 -6.48546 -4.08613 -0.39154 0.89444 1.52064 1.96371 2.20380 2.31940 2.84133 3.02954 3.11269 3.12298 3.14948 3.22168 3.30693 3.93301 3.95532 4.35033 4.47729 4.53352 4.66399 4.71387 5.02973 5.05829 5.14732 5.21331 5.51853 5.60945 5.66590 5.85732 5.88112 5.91656 6.00925 6.10984 6.17399 6.28057 6.51996 6.79923 6.83893 7.03831 7.21461 7.34628 7.40785 7.66098 7.69463 7.92614 7.96699 8.96559 9.65194 10.69095 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.002812 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.402928 B = 9956.421465 C =11250.398236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.173 6.173 10 C 0.168 3.832 11 C -0.195 4.195 12 C -0.062 4.062 13 C -0.205 4.205 14 C 0.175 3.825 15 N -0.649 5.649 16 C 0.605 3.395 17 O -0.488 6.488 18 C -0.061 4.061 19 O 0.161 5.839 20 N -0.342 5.342 21 C 0.029 3.971 22 C -0.082 4.082 23 C -0.086 4.086 24 C -0.114 4.114 25 C -0.057 4.057 26 C -0.105 4.105 27 C -0.250 4.250 28 H 0.271 0.729 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.414 0.586 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.720 -13.190 4.676 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.108 0.892 9 O -0.076 6.076 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.081 4.081 13 C -0.225 4.225 14 C 0.083 3.917 15 N -0.293 5.293 16 C 0.389 3.611 17 O -0.361 6.361 18 C -0.133 4.133 19 O 0.082 5.918 20 N -0.038 5.038 21 C -0.117 4.117 22 C -0.102 4.102 23 C -0.107 4.107 24 C -0.133 4.133 25 C -0.076 4.076 26 C -0.110 4.110 27 C -0.272 4.272 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.250 0.750 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.804 -12.730 4.528 23.155 hybrid contribution 0.604 0.773 0.237 1.009 sum 19.408 -11.957 4.765 23.288 Atomic orbital electron populations 1.70023 1.05959 1.27873 1.45653 1.25282 0.95837 0.98830 0.96435 0.85800 0.78752 0.79812 0.79199 1.19436 1.20251 1.19504 1.21236 0.91678 0.80832 1.53258 0.89194 1.84026 1.33896 1.11376 1.78318 1.19077 0.89425 0.88191 0.92003 1.20297 1.00252 0.89967 1.10942 1.20521 0.92996 0.97046 0.97522 1.20529 0.95283 0.95646 1.11090 1.17326 0.80614 0.94351 0.99431 1.43262 1.08418 1.27548 1.50110 1.16262 0.82264 0.82845 0.79714 1.90908 1.62215 1.36865 1.46149 1.24045 0.92443 0.94384 1.02395 1.84863 1.10958 1.43140 1.52869 1.73975 0.96421 1.17070 1.16362 1.21960 0.95502 0.94538 0.99742 1.20026 0.96817 0.95452 0.97864 1.20870 0.97446 0.95437 0.96979 1.20992 0.91912 1.00401 0.99971 1.20354 1.00731 0.92197 0.94310 1.20049 0.91409 0.98572 1.00962 1.20824 0.94409 0.97249 1.14681 0.91889 0.86209 0.86404 0.86274 0.74964 0.84414 0.84548 0.84622 0.83590 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.66 9.44 30.89 0.29 -10.37 16 8 H 0.09 2.22 5.30 -52.49 -0.28 1.94 16 9 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 10 C 0.17 3.92 6.64 -39.13 -0.26 3.66 16 11 C -0.19 -4.00 9.99 -39.35 -0.39 -4.39 16 12 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.20 -3.69 8.65 -39.33 -0.34 -4.03 16 14 C 0.18 3.18 6.26 -83.77 -0.52 2.66 16 15 N -0.65 -9.55 5.33 -10.97 -0.06 -9.61 16 16 C 0.61 8.87 7.53 -12.70 -0.10 8.77 16 17 O -0.49 -8.25 14.15 5.23 0.07 -8.17 16 18 C -0.06 -0.79 7.37 -35.66 -0.26 -1.05 16 19 O 0.16 1.99 10.92 15.75 0.17 2.17 16 20 N -0.34 -4.41 12.06 33.26 0.40 -4.01 16 21 C 0.03 0.34 7.60 -83.08 -0.63 -0.29 16 22 C -0.08 -0.72 10.09 -39.38 -0.40 -1.12 16 23 C -0.09 -0.58 9.89 -39.93 -0.39 -0.98 16 24 C -0.11 -0.86 9.92 -39.81 -0.39 -1.25 16 25 C -0.06 -0.58 9.87 -39.71 -0.39 -0.97 16 26 C -0.11 -1.29 6.37 -104.87 -0.67 -1.96 16 27 C -0.25 -5.19 9.05 -39.19 -0.35 -5.55 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.12 2.04 6.44 -52.48 -0.34 1.71 16 32 H 0.41 4.94 8.65 -40.82 -0.35 4.58 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.15 1.47 7.73 -52.49 -0.41 1.07 16 37 H 0.13 2.69 5.71 -52.49 -0.30 2.39 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -32.09 333.39 -6.89 -38.98 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.92 Total: 6.78 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -5.31 Total: -17.36 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 1.10 Total: -37.62 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.25 Total: -10.79 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.09 -6.89 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540997652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.383 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds