Wall clock time and date at job start Tue Mar 31 2020 14:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99846 * 2 1 4 4 H 1.48504 * 109.47454 * 240.00459 * 3 2 1 5 5 H 1.48503 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47285 * 120.00424 * 3 2 1 7 7 C 1.38652 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99865 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99586 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99891 * 185.40450 * 9 7 2 11 11 C 1.38960 * 120.03512 * 185.92207 * 10 9 7 12 12 C 1.38131 * 120.07940 * 179.97438 * 11 10 9 13 13 C 1.38189 * 120.14249 * 359.70803 * 12 11 10 14 14 C 1.38958 * 120.06338 * 0.55115 * 13 12 11 15 15 N 1.39773 * 120.04021 * 179.74489 * 14 13 12 16 16 C 1.34779 * 120.00112 * 326.11302 * 15 14 13 17 17 O 1.21659 * 119.99751 * 354.79184 * 16 15 14 18 18 C 1.47015 * 119.99947 * 174.78649 * 16 15 14 19 19 O 1.34555 * 127.10879 * 359.97438 * 18 16 15 20 20 N 1.21058 * 113.49039 * 180.02562 * 19 18 16 21 21 C 1.31098 * 112.49374 * 0.02562 * 20 19 18 22 22 C 1.41232 * 136.57150 * 179.97438 * 21 20 19 23 23 C 1.35612 * 119.45393 * 179.97438 * 22 21 20 24 24 C 1.39822 * 122.00655 * 0.02562 * 23 22 21 25 25 C 1.35943 * 121.68939 * 359.75398 * 24 23 22 26 26 C 1.39226 * 127.10912 * 180.02562 * 18 16 15 27 27 C 1.38731 * 120.03090 * 5.90609 * 10 9 7 28 28 H 0.96996 * 119.99942 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.95813 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.92623 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.96615 * 180.27208 * 13 12 11 32 32 H 0.97009 * 120.00062 * 146.10962 * 15 14 13 33 33 H 1.08000 * 120.26995 * 0.02576 * 22 21 20 34 34 H 1.08001 * 118.99276 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.15700 * 179.97438 * 24 23 22 36 36 H 1.08002 * 120.29851 * 180.02562 * 25 24 23 37 37 H 1.08002 * 120.07021 * 0.04058 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6966 -1.2126 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5042 0.1129 11 6 1.4546 -4.7449 -0.0036 12 6 2.2014 -5.9013 0.1111 13 6 3.5629 -5.8285 0.3359 14 6 4.1831 -4.5911 0.4587 15 7 5.5594 -4.5182 0.6913 16 6 6.1672 -5.4601 1.4396 17 8 5.5057 -6.3197 1.9905 18 6 7.6296 -5.4488 1.5898 19 8 8.4947 -4.5721 1.0479 20 7 9.6498 -4.7946 1.3338 21 6 9.7817 -5.8443 2.1080 22 6 10.8471 -6.5370 2.7241 23 6 10.5818 -7.6272 3.4858 24 6 9.2787 -8.0937 3.6835 25 6 8.2057 -7.4737 3.1247 26 6 8.4058 -6.3435 2.3216 27 6 3.4351 -3.4275 0.3447 28 1 -0.4850 0.8400 0.0004 29 1 0.3914 -4.8051 -0.1839 30 1 1.7208 -6.8642 0.0207 31 1 4.1448 -6.7344 0.4207 32 1 6.0771 -3.7896 0.3142 33 1 11.8647 -6.2006 2.5905 34 1 11.4023 -8.1515 3.9531 35 1 9.1201 -8.9670 4.2989 36 1 7.2085 -7.8532 3.2928 37 1 3.9153 -2.4644 0.4360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001540997652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:04 Heat of formation + Delta-G solvation = 40.247893 kcal Electronic energy + Delta-G solvation = -25317.257656 eV Core-core repulsion = 21414.532505 eV Total energy + Delta-G solvation = -3902.725151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.97185 -41.68677 -40.37910 -39.49228 -38.18228 -35.88461 -34.27913 -34.07346 -33.46031 -31.65461 -30.89653 -30.16627 -27.36596 -26.53277 -24.83720 -24.72759 -23.54768 -22.70755 -21.33203 -20.15337 -19.60157 -19.35637 -19.05672 -18.92633 -17.49641 -17.11237 -16.85563 -16.68797 -16.35636 -15.93485 -15.73898 -15.49835 -15.45428 -15.24525 -14.82605 -14.56874 -14.20533 -13.81019 -13.59150 -13.32657 -13.28931 -13.12783 -12.80982 -12.65035 -12.49465 -12.14926 -11.93186 -11.88690 -11.69665 -11.41331 -11.23491 -10.73923 -10.61218 -9.45076 -9.21519 -8.90890 -8.45768 -6.14332 -1.26398 0.08350 0.40428 0.67519 0.80392 1.18782 1.37104 1.47039 1.52567 1.70055 1.90257 2.18659 2.49790 2.50095 2.82869 3.12005 3.16350 3.47193 3.49505 3.61273 4.02834 4.06733 4.11734 4.30835 4.39534 4.41698 4.46784 4.59371 4.61030 4.85993 4.97097 5.01561 5.11190 5.23927 5.31176 5.33280 5.36811 5.63146 5.66248 5.67248 6.01752 6.05652 6.17891 6.66549 6.79130 6.98744 7.77518 8.76812 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.002812 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.402928 B = 9956.421465 C =11250.398236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.015 2.985 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.224 6.224 10 C 0.134 3.866 11 C -0.207 4.207 12 C -0.048 4.048 13 C -0.195 4.195 14 C 0.182 3.818 15 N -0.645 5.645 16 C 0.614 3.386 17 O -0.512 6.512 18 C -0.084 4.084 19 O 0.158 5.842 20 N -0.357 5.357 21 C 0.016 3.984 22 C -0.094 4.094 23 C -0.073 4.073 24 C -0.086 4.086 25 C -0.094 4.094 26 C -0.108 4.108 27 C -0.255 4.255 28 H 0.273 0.727 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.136 0.864 32 H 0.426 0.574 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.142 0.858 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.412 -15.478 5.896 27.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.835 3.165 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.130 6.130 10 C 0.083 3.917 11 C -0.227 4.227 12 C -0.067 4.067 13 C -0.216 4.216 14 C 0.089 3.911 15 N -0.290 5.290 16 C 0.400 3.600 17 O -0.388 6.388 18 C -0.156 4.156 19 O 0.079 5.921 20 N -0.054 5.054 21 C -0.130 4.130 22 C -0.113 4.113 23 C -0.094 4.094 24 C -0.104 4.104 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.276 4.276 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.176 0.824 31 H 0.153 0.847 32 H 0.265 0.735 33 H 0.177 0.823 34 H 0.198 0.802 35 H 0.189 0.811 36 H 0.159 0.841 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 22.548 -15.058 5.743 27.715 hybrid contribution -0.271 1.056 -0.026 1.091 sum 22.276 -14.002 5.718 26.925 Atomic orbital electron populations 1.70172 1.07993 1.28878 1.48581 1.26545 0.96799 1.02666 0.95828 0.84690 0.77441 0.74450 0.79946 1.17979 1.19839 1.18299 1.21758 0.92524 0.81350 1.53298 0.87925 1.83990 1.35475 1.12467 1.81087 1.19607 0.90636 0.88127 0.93366 1.20547 1.00841 0.89964 1.11312 1.20936 0.92796 0.97721 0.95222 1.20889 0.95622 0.96041 1.09018 1.17335 0.82071 0.93645 0.98063 1.43187 1.07134 1.28349 1.50377 1.16319 0.82937 0.81963 0.78732 1.90878 1.63115 1.37689 1.47072 1.23551 0.91533 0.95868 1.04601 1.84822 1.10841 1.43237 1.53230 1.73914 0.96569 1.17906 1.17042 1.22475 0.96347 0.94397 0.99796 1.20490 0.97077 0.95839 0.97882 1.21403 0.98343 0.94322 0.95324 1.21522 0.91361 1.00007 0.97534 1.20510 1.01764 0.92844 0.96211 1.20386 0.91563 0.98753 1.00490 1.20841 0.93772 0.98183 1.14817 0.91828 0.85998 0.82356 0.84664 0.73484 0.82258 0.80208 0.81078 0.84063 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.61 13.67 21.61 0.30 -55.31 16 2 C -0.02 -1.14 5.49 84.83 0.47 -0.67 16 3 Si 1.02 42.06 29.55 68.60 2.03 44.08 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 7 C -0.41 -23.42 9.44 67.92 0.64 -22.78 16 8 H 0.10 5.26 5.30 -2.91 -0.02 5.25 16 9 O -0.22 -13.14 9.76 -22.78 -0.22 -13.36 16 10 C 0.13 6.51 6.64 22.56 0.15 6.66 16 11 C -0.21 -8.60 9.99 22.42 0.22 -8.38 16 12 C -0.05 -1.64 10.03 22.23 0.22 -1.42 16 13 C -0.20 -6.72 8.65 22.43 0.19 -6.52 16 14 C 0.18 6.56 6.26 38.18 0.24 6.80 16 15 N -0.65 -18.74 5.33 -306.87 -1.64 -20.38 16 16 C 0.61 17.76 7.53 86.54 0.65 18.41 16 17 O -0.51 -16.94 14.15 -4.22 -0.06 -17.00 16 18 C -0.08 -2.16 7.37 24.81 0.18 -1.97 16 19 O 0.16 3.90 10.92 66.47 0.73 4.62 16 20 N -0.36 -8.98 12.06 -48.85 -0.59 -9.57 16 21 C 0.02 0.35 7.60 42.55 0.32 0.67 16 22 C -0.09 -1.31 10.09 22.40 0.23 -1.09 16 23 C -0.07 -0.63 9.89 22.05 0.22 -0.41 16 24 C -0.09 -0.93 9.92 22.12 0.22 -0.71 16 25 C -0.09 -1.74 9.87 22.19 0.22 -1.52 16 26 C -0.11 -2.53 6.37 -20.03 -0.13 -2.65 16 27 C -0.25 -10.82 9.05 22.52 0.20 -10.61 16 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 30 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.14 4.32 6.44 -2.91 -0.02 4.30 16 32 H 0.43 10.13 8.65 -92.70 -0.80 9.33 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 35 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 36 H 0.14 2.69 7.73 -2.91 -0.02 2.67 16 37 H 0.13 5.46 5.71 -2.91 -0.02 5.45 16 Total: -1.00 -74.64 333.39 5.15 -69.49 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.36 Total: 23.63 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.25 Total: -26.21 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -1.93 Total: -85.26 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: 0.44 Total: -25.74 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -74.64 5.15 -69.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540997652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.736 kcal (2) G-P(sol) polarization free energy of solvation -74.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds