Wall clock time and date at job start Tue Mar 31 2020 14:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 120.00302 * 2 1 4 4 H 1.48500 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47341 * 300.00443 * 3 2 1 6 6 H 1.48501 * 109.46843 * 60.00268 * 3 2 1 7 7 C 1.40275 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00090 * 189.03892 * 7 2 1 9 9 C 1.40872 * 120.00063 * 9.03340 * 7 2 1 10 10 C 1.40715 * 120.32972 * 33.78910 * 9 7 2 11 11 C 1.37584 * 119.87971 * 180.31738 * 10 9 7 12 12 C 1.38841 * 120.57580 * 359.70212 * 11 10 9 13 13 C 1.38193 * 120.68273 * 0.02562 * 12 11 10 14 14 C 1.39249 * 120.09198 * 0.02562 * 13 12 11 15 15 C 1.47380 * 120.28807 * 179.97438 * 14 13 12 16 16 O 1.21638 * 120.00305 * 185.64783 * 15 14 13 17 17 N 1.34777 * 120.00086 * 5.64671 * 15 14 13 18 18 C 1.39900 * 120.00300 * 185.41400 * 17 15 14 19 19 C 1.38688 * 120.12136 * 20.04494 * 18 17 15 20 20 C 1.38530 * 120.37302 * 180.02562 * 19 18 17 21 21 C 1.37803 * 120.46894 * 359.93887 * 20 19 18 22 22 C 1.39646 * 119.87349 * 0.02562 * 21 20 19 23 23 N 1.36163 * 133.65947 * 180.02562 * 22 21 20 24 24 C 1.30627 * 108.72383 * 179.97438 * 23 22 21 25 25 O 1.35189 * 124.94278 * 179.97438 * 24 23 22 26 26 O 1.34357 * 110.10863 * 0.02562 * 24 23 22 27 27 C 1.35303 * 108.17332 * 359.97438 * 26 24 23 28 28 H 0.97006 * 119.99910 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.05653 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.70948 * 179.72318 * 11 10 9 31 31 H 1.08006 * 119.65534 * 180.02562 * 12 11 10 32 32 H 1.08008 * 119.95501 * 180.02562 * 13 12 11 33 33 H 0.96999 * 119.99810 * 5.41446 * 17 15 14 34 34 H 1.07998 * 119.81093 * 0.02562 * 19 18 17 35 35 H 1.08006 * 119.76183 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.06627 * 180.02562 * 21 20 19 37 37 H 0.96701 * 114.00081 * 0.02753 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 -0.0006 5 1 1.8816 2.3965 -1.2124 6 1 1.8816 2.3963 1.2126 7 6 2.0076 -1.2148 -0.0005 8 1 3.0775 -1.2208 0.1464 9 6 1.3163 -2.4272 -0.1926 10 6 0.1907 -2.4775 -1.0356 11 6 -0.4814 -3.6650 -1.2114 12 6 -0.0555 -4.8195 -0.5684 13 6 1.0502 -4.7981 0.2602 14 6 1.7508 -3.6113 0.4591 15 6 2.9303 -3.5835 1.3423 16 8 3.4769 -2.5263 1.5940 17 7 3.4034 -4.7293 1.8711 18 6 4.4509 -4.6920 2.7977 19 6 4.7302 -3.5207 3.4857 20 6 5.7665 -3.4778 4.4040 21 6 6.5320 -4.5977 4.6465 22 6 6.2634 -5.7852 3.9627 23 7 6.8222 -7.0268 3.9797 24 6 6.1806 -7.7871 3.1332 25 8 6.4653 -9.0859 2.8891 26 8 5.1973 -7.0900 2.5397 27 6 5.2160 -5.8302 3.0329 28 1 -0.4850 0.8401 0.0004 29 1 -0.1477 -1.5844 -1.5399 30 1 -1.3476 -3.6995 -1.8555 31 1 -0.5940 -5.7438 -0.7174 32 1 1.3715 -5.7033 0.7542 33 1 3.0176 -5.5799 1.6093 34 1 4.1363 -2.6370 3.3046 35 1 5.9756 -2.5602 4.9339 36 1 7.3381 -4.5570 5.3641 37 1 7.2072 -9.4297 3.4053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570055913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:41 Heat of formation + Delta-G solvation = 2.128296 kcal Electronic energy + Delta-G solvation = -26080.193149 eV Core-core repulsion = 22175.815008 eV Total energy + Delta-G solvation = -3904.378141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.27121 -39.85805 -38.47915 -37.65238 -36.75658 -34.98829 -33.97268 -33.45934 -30.48802 -29.89179 -29.25074 -28.58619 -25.59579 -23.91051 -23.22642 -22.82342 -21.55679 -20.81178 -19.79768 -19.12439 -18.13347 -18.12201 -17.26682 -17.25851 -16.17397 -15.77937 -15.36230 -14.97466 -14.57970 -14.38167 -14.19938 -14.03381 -13.75864 -13.40017 -13.09304 -12.82157 -12.50282 -12.42506 -12.01798 -11.77517 -11.77143 -11.36569 -11.21826 -11.04297 -10.84176 -10.77897 -10.58163 -10.13384 -9.87937 -9.80525 -9.39324 -8.55949 -8.42449 -7.80345 -7.58791 -7.45652 -6.93181 -4.53343 0.85328 1.27387 1.49694 2.14300 2.45426 2.70445 3.04561 3.13111 3.14342 3.46117 3.46963 3.68104 3.88297 4.04158 4.44615 4.54907 4.82225 5.05764 5.36143 5.46012 5.48638 5.56171 5.65461 5.85701 5.95582 6.12362 6.18652 6.34930 6.45505 6.50685 6.64748 6.79815 6.82653 6.98269 7.06295 7.10257 7.32486 7.49084 7.54972 7.71789 7.83420 8.00395 8.07082 8.51312 8.67503 8.74147 9.02899 10.01152 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.003776 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.735878 B = 7413.589968 C = 9023.634488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.413 4.413 8 H 0.108 0.892 9 C 0.148 3.852 10 C -0.144 4.144 11 C -0.094 4.094 12 C -0.241 4.241 13 C -0.056 4.056 14 C -0.269 4.269 15 C 0.563 3.437 16 O -0.512 6.512 17 N -0.682 5.682 18 C 0.219 3.781 19 C -0.136 4.136 20 C -0.079 4.079 21 C -0.114 4.114 22 C 0.071 3.929 23 N -0.526 5.526 24 C 0.444 3.556 25 O -0.418 6.418 26 O -0.201 6.201 27 C -0.045 4.045 28 H 0.284 0.716 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.408 0.592 34 H 0.178 0.822 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.214 -9.021 5.913 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.440 4.440 8 H 0.126 0.874 9 C 0.143 3.857 10 C -0.163 4.163 11 C -0.113 4.113 12 C -0.260 4.260 13 C -0.075 4.075 14 C -0.274 4.274 15 C 0.361 3.639 16 O -0.390 6.390 17 N -0.325 5.325 18 C 0.120 3.880 19 C -0.157 4.157 20 C -0.099 4.099 21 C -0.134 4.134 22 C -0.040 4.040 23 N -0.277 5.277 24 C 0.194 3.806 25 O -0.219 6.219 26 O -0.095 6.095 27 C -0.096 4.096 28 H 0.095 0.905 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.244 0.756 34 H 0.195 0.805 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 8.297 -8.367 5.908 13.181 hybrid contribution -0.138 -0.161 -0.242 0.322 sum 8.158 -8.528 5.666 13.092 Atomic orbital electron populations 1.69715 1.07863 1.29824 1.33645 1.26170 0.94821 1.01985 0.92038 0.86082 0.81335 0.79929 0.78495 1.17858 1.19787 1.19725 1.20293 0.97477 0.89432 1.36818 0.87381 1.17455 0.90087 0.91131 0.87009 1.21396 0.98153 0.96483 1.00316 1.20834 0.98192 0.93509 0.98723 1.20299 1.01394 0.97512 1.06826 1.20651 0.95161 0.95031 0.96626 1.19236 1.01884 0.96582 1.09671 1.18620 0.84040 0.81769 0.79474 1.90585 1.58732 1.29502 1.60192 1.43903 1.34359 1.11684 1.42525 1.16743 0.89249 0.89826 0.92146 1.21809 1.00261 0.97998 0.95599 1.21016 0.94275 0.97781 0.96828 1.20115 1.02256 0.89453 1.01601 1.19192 0.94045 0.92516 0.98261 1.71148 1.29923 1.03040 1.23628 1.22193 0.84789 0.86187 0.87416 1.84650 1.55951 1.15469 1.65834 1.84316 1.47292 1.20825 1.57059 1.19713 1.03022 0.83331 1.03504 0.90503 0.86227 0.88862 0.88882 0.89287 0.75629 0.80540 0.84355 0.85016 0.70222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.37 11.10 55.56 0.62 -18.75 16 2 C 0.07 1.68 5.26 -17.30 -0.09 1.59 16 3 Si 0.92 18.59 29.57 -169.99 -5.03 13.57 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.41 -10.70 7.71 -37.82 -0.29 -10.99 16 8 H 0.11 2.88 5.87 -52.49 -0.31 2.58 16 9 C 0.15 3.77 5.51 -106.53 -0.59 3.18 16 10 C -0.14 -3.51 8.62 -38.88 -0.34 -3.84 16 11 C -0.09 -2.03 10.01 -39.60 -0.40 -2.43 16 12 C -0.24 -4.95 10.03 -39.37 -0.39 -5.35 16 13 C -0.06 -1.16 9.50 -39.22 -0.37 -1.53 16 14 C -0.27 -6.28 5.92 -104.37 -0.62 -6.90 16 15 C 0.56 12.43 7.56 -12.54 -0.09 12.34 16 16 O -0.51 -12.25 10.48 5.24 0.05 -12.19 16 17 N -0.68 -12.58 5.32 -10.82 -0.06 -12.64 16 18 C 0.22 3.84 6.50 -83.67 -0.54 3.30 16 19 C -0.14 -2.27 8.78 -39.31 -0.35 -2.62 16 20 C -0.08 -1.07 10.01 -39.63 -0.40 -1.46 16 21 C -0.11 -1.52 10.09 -39.22 -0.40 -1.91 16 22 C 0.07 1.09 7.23 -84.71 -0.61 0.48 16 23 N -0.53 -7.36 11.38 -12.81 -0.15 -7.50 16 24 C 0.44 5.79 9.54 52.25 0.50 6.29 16 25 O -0.42 -3.66 13.62 -40.55 -0.55 -4.21 16 26 O -0.20 -3.13 10.78 -20.56 -0.22 -3.35 16 27 C -0.04 -0.74 7.30 -38.54 -0.28 -1.02 16 28 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 29 H 0.12 2.96 6.56 -52.49 -0.34 2.62 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.09 1.55 6.48 -52.48 -0.34 1.21 16 33 H 0.41 6.73 6.87 -40.82 -0.28 6.45 16 34 H 0.18 3.31 5.42 -52.49 -0.28 3.03 16 35 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.44 1.31 9.06 45.56 0.41 1.73 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -30.02 323.95 -7.68 -37.70 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -1.97 Total: 13.38 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -5.26 Total: -10.89 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.41 Total: -38.89 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.72 Total: -19.76 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.02 -7.68 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570055913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.833 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds