Wall clock time and date at job start Tue Mar 31 2020 14:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 120.00302 * 2 1 4 4 H 1.48500 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47341 * 300.00443 * 3 2 1 6 6 H 1.48501 * 109.46843 * 60.00268 * 3 2 1 7 7 C 1.40275 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00090 * 189.03892 * 7 2 1 9 9 C 1.40872 * 120.00063 * 9.03340 * 7 2 1 10 10 C 1.40715 * 120.32972 * 33.78910 * 9 7 2 11 11 C 1.37584 * 119.87971 * 180.31738 * 10 9 7 12 12 C 1.38841 * 120.57580 * 359.70212 * 11 10 9 13 13 C 1.38193 * 120.68273 * 0.02562 * 12 11 10 14 14 C 1.39249 * 120.09198 * 0.02562 * 13 12 11 15 15 C 1.47380 * 120.28807 * 179.97438 * 14 13 12 16 16 O 1.21638 * 120.00305 * 185.64783 * 15 14 13 17 17 N 1.34777 * 120.00086 * 5.64671 * 15 14 13 18 18 C 1.39900 * 120.00300 * 185.41400 * 17 15 14 19 19 C 1.38688 * 120.12136 * 20.04494 * 18 17 15 20 20 C 1.38530 * 120.37302 * 180.02562 * 19 18 17 21 21 C 1.37803 * 120.46894 * 359.93887 * 20 19 18 22 22 C 1.39646 * 119.87349 * 0.02562 * 21 20 19 23 23 N 1.36163 * 133.65947 * 180.02562 * 22 21 20 24 24 C 1.30627 * 108.72383 * 179.97438 * 23 22 21 25 25 O 1.35189 * 124.94278 * 179.97438 * 24 23 22 26 26 O 1.34357 * 110.10863 * 0.02562 * 24 23 22 27 27 C 1.35303 * 108.17332 * 359.97438 * 26 24 23 28 28 H 0.97006 * 119.99910 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.05653 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.70948 * 179.72318 * 11 10 9 31 31 H 1.08006 * 119.65534 * 180.02562 * 12 11 10 32 32 H 1.08008 * 119.95501 * 180.02562 * 13 12 11 33 33 H 0.96999 * 119.99810 * 5.41446 * 17 15 14 34 34 H 1.07998 * 119.81093 * 0.02562 * 19 18 17 35 35 H 1.08006 * 119.76183 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.06627 * 180.02562 * 21 20 19 37 37 H 0.96701 * 114.00081 * 0.02753 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 -0.0006 5 1 1.8816 2.3965 -1.2124 6 1 1.8816 2.3963 1.2126 7 6 2.0076 -1.2148 -0.0005 8 1 3.0775 -1.2208 0.1464 9 6 1.3163 -2.4272 -0.1926 10 6 0.1907 -2.4775 -1.0356 11 6 -0.4814 -3.6650 -1.2114 12 6 -0.0555 -4.8195 -0.5684 13 6 1.0502 -4.7981 0.2602 14 6 1.7508 -3.6113 0.4591 15 6 2.9303 -3.5835 1.3423 16 8 3.4769 -2.5263 1.5940 17 7 3.4034 -4.7293 1.8711 18 6 4.4509 -4.6920 2.7977 19 6 4.7302 -3.5207 3.4857 20 6 5.7665 -3.4778 4.4040 21 6 6.5320 -4.5977 4.6465 22 6 6.2634 -5.7852 3.9627 23 7 6.8222 -7.0268 3.9797 24 6 6.1806 -7.7871 3.1332 25 8 6.4653 -9.0859 2.8891 26 8 5.1973 -7.0900 2.5397 27 6 5.2160 -5.8302 3.0329 28 1 -0.4850 0.8401 0.0004 29 1 -0.1477 -1.5844 -1.5399 30 1 -1.3476 -3.6995 -1.8555 31 1 -0.5940 -5.7438 -0.7174 32 1 1.3715 -5.7033 0.7542 33 1 3.0176 -5.5799 1.6093 34 1 4.1363 -2.6370 3.3046 35 1 5.9756 -2.5602 4.9339 36 1 7.3381 -4.5570 5.3641 37 1 7.2072 -9.4297 3.4053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570055913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:41 Heat of formation + Delta-G solvation = -20.619990 kcal Electronic energy + Delta-G solvation = -26081.179589 eV Core-core repulsion = 22175.815008 eV Total energy + Delta-G solvation = -3905.364580 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.39306 -41.39685 -39.54839 -38.95197 -38.21493 -36.38324 -35.61278 -34.83960 -32.11056 -31.61038 -30.46911 -29.94155 -27.37389 -25.10917 -24.56402 -24.11852 -23.09553 -22.36265 -21.31659 -20.08366 -19.67520 -19.35144 -18.82280 -18.36202 -17.65781 -17.19183 -16.92399 -16.14706 -16.01869 -15.96146 -15.80762 -15.25421 -15.00209 -14.74779 -14.55129 -14.37180 -14.12211 -13.69870 -13.45093 -13.22978 -12.95028 -12.92713 -12.84158 -12.55630 -12.43477 -12.27289 -11.95058 -11.80295 -11.53224 -11.20824 -11.12518 -10.22757 -9.61220 -9.50975 -9.30189 -8.86019 -8.70530 -6.40691 -0.30142 0.06027 0.47598 0.52568 0.98244 1.29756 1.37000 1.49325 1.52303 2.02522 2.17400 2.21514 2.40434 2.65641 2.77240 3.40516 3.67163 3.75347 3.86235 4.19553 4.25628 4.31268 4.39036 4.47988 4.56128 4.69322 4.80991 4.97947 5.05462 5.19648 5.22355 5.29967 5.36368 5.45360 5.56186 5.68014 5.77398 5.98379 6.00571 6.06661 6.28118 6.43385 6.57183 6.67820 6.84397 6.92325 7.36235 8.26069 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.003776 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.735878 B = 7413.589968 C = 9023.634488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.265 1.265 7 C -0.451 4.451 8 H 0.088 0.912 9 C 0.120 3.880 10 C -0.174 4.174 11 C -0.089 4.089 12 C -0.236 4.236 13 C -0.056 4.056 14 C -0.286 4.286 15 C 0.562 3.438 16 O -0.538 6.538 17 N -0.671 5.671 18 C 0.192 3.808 19 C -0.150 4.150 20 C -0.070 4.070 21 C -0.100 4.100 22 C 0.062 3.938 23 N -0.529 5.529 24 C 0.454 3.546 25 O -0.404 6.404 26 O -0.216 6.216 27 C -0.056 4.056 28 H 0.291 0.709 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.415 0.585 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.462 0.538 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -10.979 7.003 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.182 1.182 6 H -0.190 1.190 7 C -0.479 4.479 8 H 0.106 0.894 9 C 0.116 3.884 10 C -0.193 4.193 11 C -0.108 4.108 12 C -0.255 4.255 13 C -0.075 4.075 14 C -0.291 4.291 15 C 0.359 3.641 16 O -0.418 6.418 17 N -0.315 5.315 18 C 0.095 3.905 19 C -0.171 4.171 20 C -0.090 4.090 21 C -0.120 4.120 22 C -0.050 4.050 23 N -0.281 5.281 24 C 0.205 3.795 25 O -0.210 6.210 26 O -0.111 6.111 27 C -0.107 4.107 28 H 0.102 0.898 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.253 0.747 34 H 0.169 0.831 35 H 0.189 0.811 36 H 0.183 0.817 37 H 0.327 0.673 Dipole moment (debyes) X Y Z Total from point charges 9.385 -10.394 7.020 15.665 hybrid contribution -0.387 0.117 -0.506 0.648 sum 8.998 -10.277 6.514 15.133 Atomic orbital electron populations 1.69738 1.08751 1.30870 1.34843 1.26826 0.95569 1.04427 0.91363 0.85176 0.79230 0.76300 0.79167 1.19020 1.18181 1.18952 1.20251 0.96794 0.90948 1.39930 0.89404 1.17815 0.90971 0.91980 0.87639 1.21351 0.99209 0.97281 1.01467 1.21200 0.98337 0.92877 0.98370 1.20774 1.00937 0.98461 1.05281 1.21035 0.94726 0.95333 0.96363 1.19603 1.02712 0.97111 1.09663 1.18537 0.83827 0.82355 0.79407 1.90579 1.59479 1.30791 1.60959 1.43553 1.34647 1.10795 1.42500 1.16852 0.89818 0.90923 0.92912 1.21715 1.01368 0.97055 0.97007 1.21309 0.92712 0.99292 0.95663 1.20514 1.02189 0.88328 1.00949 1.19610 0.93696 0.93611 0.98048 1.71189 1.30109 1.02562 1.24287 1.22471 0.83580 0.87165 0.86263 1.84697 1.57093 1.13091 1.66093 1.84280 1.48345 1.20778 1.57670 1.19632 1.03440 0.83425 1.04185 0.89787 0.87763 0.86048 0.85079 0.85755 0.74711 0.83086 0.81119 0.81725 0.67334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.96 11.10 21.88 0.24 -41.72 16 2 C 0.03 1.74 5.26 85.37 0.45 2.19 16 3 Si 0.98 39.73 29.57 68.60 2.03 41.76 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.45 -24.86 7.71 23.41 0.18 -24.68 16 8 H 0.09 5.06 5.87 -2.91 -0.02 5.04 16 9 C 0.12 6.40 5.51 -21.10 -0.12 6.29 16 10 C -0.17 -8.72 8.62 22.72 0.20 -8.52 16 11 C -0.09 -3.79 10.01 22.26 0.22 -3.57 16 12 C -0.24 -9.15 10.03 22.40 0.22 -8.92 16 13 C -0.06 -2.26 9.50 22.50 0.21 -2.04 16 14 C -0.29 -13.71 5.92 -19.70 -0.12 -13.83 16 15 C 0.56 25.78 7.56 86.65 0.66 26.43 16 16 O -0.54 -27.30 10.48 -4.15 -0.04 -27.34 16 17 N -0.67 -25.17 5.32 -306.38 -1.63 -26.80 16 18 C 0.19 6.79 6.50 38.18 0.25 7.04 16 19 C -0.15 -5.11 8.78 22.45 0.20 -4.91 16 20 C -0.07 -1.78 10.01 22.24 0.22 -1.55 16 21 C -0.10 -2.39 10.09 22.51 0.23 -2.16 16 22 C 0.06 1.76 7.23 39.27 0.28 2.05 16 23 N -0.53 -13.46 11.38 -422.79 -4.81 -18.27 16 24 C 0.45 10.80 9.54 130.42 1.24 12.04 16 25 O -0.40 -5.85 13.62 -62.42 -0.85 -6.70 16 26 O -0.22 -6.42 10.78 9.10 0.10 -6.33 16 27 C -0.06 -1.80 7.30 22.95 0.17 -1.63 16 28 H 0.29 13.44 8.29 -92.70 -0.77 12.67 16 29 H 0.10 5.44 6.56 -2.91 -0.02 5.42 16 30 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 31 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 32 H 0.12 4.03 6.48 -2.91 -0.02 4.01 16 33 H 0.42 13.58 6.87 -92.71 -0.64 12.95 16 34 H 0.15 5.98 5.42 -2.91 -0.02 5.97 16 35 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.46 1.14 9.06 -74.06 -0.67 0.47 16 Total: -1.00 -68.64 323.95 -0.58 -69.23 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.12 Total: 31.95 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.50 Total: -15.78 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -6.19 Total: -86.78 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.80 Total: -40.37 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -68.64 -0.58 -69.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570055913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.606 kcal (2) G-P(sol) polarization free energy of solvation -68.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds