Wall clock time and date at job start Tue Mar 31 2020 14:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86799 * 119.99934 * 2 1 4 4 H 1.48502 * 109.47179 * 270.00223 * 3 2 1 5 5 H 1.48504 * 109.47247 * 30.00055 * 3 2 1 6 6 H 1.48499 * 109.46934 * 150.00183 * 3 2 1 7 7 C 1.39940 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 168.12309 * 7 2 1 9 9 C 1.41392 * 120.00466 * 348.13014 * 7 2 1 10 10 C 1.40739 * 120.24038 * 328.06310 * 9 7 2 11 11 C 1.37596 * 119.74192 * 180.02562 * 10 9 7 12 12 C 1.38647 * 120.25189 * 0.02562 * 11 10 9 13 13 C 1.38619 * 120.50223 * 359.72358 * 12 11 10 14 14 C 1.37640 * 120.24481 * 0.54924 * 13 12 11 15 15 S 1.76198 * 120.12689 * 179.72063 * 14 13 12 16 16 O 1.42105 * 106.40194 * 1.82024 * 15 14 13 17 17 O 1.42095 * 106.40459 * 228.89135 * 15 14 13 18 18 N 1.65605 * 107.21505 * 115.35238 * 15 14 13 19 19 C 1.48137 * 127.08479 * 97.39340 * 18 15 14 20 20 C 1.54971 * 102.94508 * 201.30166 * 19 18 15 21 21 O 1.44783 * 102.45152 * 324.12502 * 20 19 18 22 22 C 1.43134 * 105.39740 * 36.90941 * 21 20 19 23 23 C 1.53371 * 114.92809 * 204.67334 * 22 21 20 24 24 N 1.48069 * 86.01789 * 220.48284 * 23 22 21 25 25 C 1.48066 * 90.85073 * 24.28975 * 24 23 22 26 26 H 0.97003 * 119.99382 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.12776 * 0.05455 * 10 9 7 28 28 H 1.08007 * 119.87311 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.75413 * 180.02562 * 12 11 10 30 30 H 1.07999 * 119.87759 * 180.30144 * 13 12 11 31 31 H 1.09000 * 110.75268 * 82.88828 * 19 18 15 32 32 H 1.09005 * 110.75014 * 319.71862 * 19 18 15 33 33 H 1.09002 * 110.80894 * 82.36311 * 20 19 18 34 34 H 1.08996 * 110.81295 * 205.88122 * 20 19 18 35 35 H 1.08998 * 113.78710 * 334.75464 * 23 22 21 36 36 H 1.09001 * 113.78427 * 106.20904 * 23 22 21 37 37 H 1.00900 * 110.99815 * 137.22108 * 24 23 22 38 38 H 1.08994 * 113.78619 * 221.43827 * 25 24 23 39 39 H 1.08999 * 113.88768 * 90.00258 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0706 -1.2221 -0.1920 9 6 1.3237 -2.4233 0.2529 10 6 0.2112 -2.4426 1.1148 11 6 -0.4468 -3.6272 1.3535 12 6 -0.0173 -4.7989 0.7493 13 6 1.0740 -4.7907 -0.1054 14 6 1.7508 -3.6183 -0.3544 15 16 3.1421 -3.6129 -1.4356 16 8 3.2825 -4.9430 -1.9155 17 8 4.1777 -2.9193 -0.7533 18 7 2.7409 -2.6830 -2.7459 19 6 3.0813 -1.2585 -2.9682 20 6 2.0240 -0.8070 -4.0074 21 8 1.8723 -1.9877 -4.8315 22 6 1.9730 -3.0955 -3.9307 23 6 2.4309 -4.4110 -4.5725 24 7 1.4181 -5.0636 -3.7118 25 6 0.6465 -3.8028 -3.6261 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1250 -1.5311 1.5864 28 1 -1.3005 -3.6446 2.0149 29 1 -0.5400 -5.7241 0.9420 30 1 1.3969 -5.7084 -0.5745 31 1 4.0881 -1.1609 -3.3742 32 1 2.9823 -0.6890 -2.0440 33 1 1.0838 -0.5530 -3.5179 34 1 2.3940 0.0318 -4.5969 35 1 2.2123 -4.4798 -5.6381 36 1 3.4574 -4.6851 -4.3287 37 1 0.9068 -5.7664 -4.2243 38 1 0.2553 -3.5937 -2.6305 39 1 -0.1024 -3.6895 -4.4100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:25 Heat of formation + Delta-G solvation = -35.529622 kcal Electronic energy + Delta-G solvation = -27767.229218 eV Core-core repulsion = 23996.662058 eV Total energy + Delta-G solvation = -3770.567159 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30286 -37.60359 -37.05173 -35.96135 -34.78974 -33.95746 -33.08662 -30.23612 -29.56275 -28.76082 -25.88177 -25.53407 -24.88895 -22.56215 -21.66400 -21.14664 -20.29796 -17.93125 -17.65290 -17.19684 -16.82943 -16.08470 -15.65947 -15.37711 -14.93768 -14.38551 -14.35415 -14.06255 -13.68731 -13.36891 -13.20106 -12.96943 -12.85918 -12.74243 -12.46102 -11.99827 -11.71846 -11.51274 -11.36917 -11.28700 -11.20329 -11.15155 -11.04903 -10.94669 -10.69457 -10.61137 -10.41634 -9.86444 -9.57884 -9.48925 -9.21407 -8.59868 -8.52785 -7.99469 -7.57577 -7.08839 -4.81198 1.45011 2.34322 2.69269 2.90768 2.97606 3.04964 3.70053 3.72330 3.94675 4.28004 4.35830 4.64164 4.92402 4.96591 5.12092 5.32774 5.42944 5.48656 5.53825 5.55466 5.81657 6.02146 6.06172 6.08244 6.12403 6.20390 6.28785 6.38808 6.41047 6.51382 6.59449 6.79084 6.96436 7.06852 7.24889 7.33906 7.47078 7.52798 7.67535 7.80295 7.92673 8.31111 8.48209 8.63546 9.85939 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.008690 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.026457 B = 3221.219020 C = 4303.995405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.082 3.918 3 Si 0.896 3.104 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.485 4.485 8 H 0.111 0.889 9 C 0.195 3.805 10 C -0.159 4.159 11 C -0.075 4.075 12 C -0.249 4.249 13 C 0.010 3.990 14 C -0.766 4.766 15 S 2.723 3.277 16 O -0.956 6.956 17 O -0.975 6.975 18 N -0.993 5.993 19 C 0.085 3.915 20 C 0.042 3.958 21 O -0.363 6.363 22 C 0.324 3.676 23 C 0.003 3.997 24 N -0.601 5.601 25 C -0.032 4.032 26 H 0.286 0.714 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.321 0.679 38 H 0.108 0.892 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.107 0.099 -7.303 7.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.514 4.514 8 H 0.129 0.871 9 C 0.191 3.809 10 C -0.179 4.179 11 C -0.094 4.094 12 C -0.269 4.269 13 C -0.010 4.010 14 C -0.861 4.861 15 S 2.822 3.178 16 O -0.946 6.946 17 O -0.966 6.966 18 N -0.830 5.830 19 C -0.040 4.040 20 C -0.035 4.035 21 O -0.279 6.279 22 C 0.195 3.805 23 C -0.129 4.129 24 N -0.227 5.227 25 C -0.165 4.165 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.099 -0.318 -6.632 6.730 hybrid contribution -1.178 1.240 -0.383 1.752 sum -0.079 0.922 -7.016 7.076 Atomic orbital electron populations 1.69796 1.07591 1.29964 1.32954 1.25936 0.94775 1.01370 0.91769 0.86462 0.81337 0.80127 0.80161 1.18525 1.19668 1.17480 1.20355 0.97953 0.90635 1.42417 0.87130 1.17020 0.89190 0.89747 0.84971 1.21402 0.99105 0.96558 1.00832 1.20909 0.97417 0.93599 0.97453 1.20527 1.02108 0.97065 1.07242 1.20278 0.92252 0.95420 0.93079 1.29924 1.28621 1.01282 1.26293 1.00650 0.74197 0.71491 0.71470 1.93518 1.86391 1.34664 1.80060 1.93483 1.55437 1.75028 1.72636 1.59376 1.68643 1.22220 1.32789 1.23026 0.97873 0.81600 1.01537 1.23926 0.99357 0.88333 0.91901 1.88958 1.93215 1.15044 1.30645 1.22678 0.91216 0.85953 0.80649 1.24387 1.00554 0.91270 0.96658 1.67121 1.09470 1.05561 1.40553 1.24844 0.96667 0.90583 1.04368 0.90290 0.86370 0.88940 0.88767 0.86853 0.91237 0.87191 0.90363 0.88299 0.90612 0.87936 0.86632 0.87418 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.66 11.13 55.55 0.62 -17.04 16 2 C 0.08 1.83 5.07 -17.34 -0.09 1.74 16 3 Si 0.90 16.72 29.03 -169.99 -4.93 11.79 16 4 H -0.26 -4.51 7.11 56.52 0.40 -4.10 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.25 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.49 -11.66 6.23 -37.75 -0.24 -11.90 16 8 H 0.11 2.71 4.65 -52.49 -0.24 2.47 16 9 C 0.20 4.84 5.50 -106.82 -0.59 4.25 16 10 C -0.16 -3.85 8.64 -38.87 -0.34 -4.19 16 11 C -0.07 -1.65 10.02 -39.66 -0.40 -2.05 16 12 C -0.25 -5.37 10.05 -39.29 -0.39 -5.77 16 13 C 0.01 0.22 9.54 -39.66 -0.38 -0.16 16 14 C -0.77 -18.07 5.19 -38.87 -0.20 -18.27 16 15 S 2.72 60.62 5.01 -107.50 -0.54 60.08 16 16 O -0.96 -21.41 13.43 -57.17 -0.77 -22.18 16 17 O -0.97 -23.91 15.32 -57.17 -0.88 -24.78 16 18 N -0.99 -19.28 3.46 -105.05 -0.36 -19.64 16 19 C 0.08 1.48 7.09 -2.10 -0.01 1.46 16 20 C 0.04 0.65 7.89 38.20 0.30 0.95 16 21 O -0.36 -5.94 11.38 -35.23 -0.40 -6.34 16 22 C 0.32 5.62 1.84 -70.81 -0.13 5.49 16 23 C 0.00 0.05 7.84 -2.99 -0.02 0.03 16 24 N -0.60 -9.84 6.62 -119.60 -0.79 -10.63 16 25 C -0.03 -0.55 8.41 -2.99 -0.03 -0.57 16 26 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 27 H 0.12 2.89 6.51 -52.49 -0.34 2.55 16 28 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.11 2.42 7.33 -52.49 -0.38 2.04 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.11 2.07 4.49 -51.93 -0.23 1.84 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.70 7.42 -51.93 -0.39 1.32 16 37 H 0.32 4.29 8.92 -39.29 -0.35 3.94 16 38 H 0.11 2.11 7.35 -51.93 -0.38 1.73 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -28.20 321.82 -10.13 -38.33 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -4.41 Total: 14.55 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -2.51 Total: -28.99 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.54 Total: -47.31 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -2.04 Total: -53.30 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -4.93 Total: 11.79 kcal Atomic # 16 Polarization: 60.62 SS G_CDS: -0.54 Total: 60.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.20 -10.13 -38.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.799 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds