Wall clock time and date at job start Tue Mar 31 2020 13:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47251 * 2 1 4 4 C 1.50710 * 109.46991 * 240.00038 * 2 1 3 5 5 O 1.20828 * 119.99421 * 239.99620 * 4 2 1 6 6 O 1.34221 * 119.99843 * 60.00039 * 4 2 1 7 7 C 1.50700 * 109.47195 * 120.00188 * 2 1 3 8 8 C 1.38292 * 119.97088 * 359.97438 * 7 2 1 9 9 C 1.38244 * 120.10646 * 180.02562 * 8 7 2 10 10 C 1.38160 * 120.06011 * 359.74240 * 9 8 7 11 11 C 1.38716 * 119.94279 * 0.50910 * 10 9 8 12 12 O 1.35920 * 120.05603 * 179.76820 * 11 10 9 13 13 C 1.34263 * 117.00012 * 68.70238 * 12 11 10 14 14 O 1.20830 * 119.99915 * 5.77801 * 13 12 11 15 15 C 1.50700 * 120.00113 * 185.77669 * 13 12 11 16 16 S 1.81004 * 109.47287 * 180.02562 * 15 13 12 17 17 C 1.76193 * 100.00321 * 179.97438 * 16 15 13 18 18 H 1.08009 * 119.99757 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00162 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00202 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00086 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46987 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46872 * 120.00143 * 21 19 17 24 24 H 1.48498 * 109.47158 * 240.00467 * 21 19 17 25 25 C 1.38125 * 119.97090 * 180.02562 * 7 2 1 26 26 H 1.09001 * 109.47282 * 299.99981 * 1 2 3 27 27 H 1.09003 * 109.47024 * 59.99966 * 1 2 3 28 28 H 1.09004 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47576 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47134 * 299.99967 * 3 2 1 31 31 H 1.08995 * 109.47329 * 59.99611 * 3 2 1 32 32 H 0.96702 * 116.99466 * 179.97438 * 6 4 2 33 33 H 1.07997 * 119.94395 * 359.97438 * 8 7 2 34 34 H 1.08003 * 119.96910 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.03003 * 180.27622 * 10 9 8 36 36 H 1.09001 * 109.46894 * 299.99889 * 15 13 12 37 37 H 1.08993 * 109.47617 * 60.00317 * 15 13 12 38 38 H 0.96998 * 120.00183 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.02916 * 359.97438 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7270 -1.6928 -1.1196 6 8 1.7080 -0.2518 -2.4496 7 6 2.0323 -0.7104 1.2304 8 6 1.1331 -1.2353 2.1406 9 6 1.5909 -1.8872 3.2705 10 6 2.9483 -2.0204 3.4905 11 6 3.8523 -1.4901 2.5817 12 8 5.1883 -1.6157 2.7982 13 6 5.7078 -2.8501 2.7029 14 8 5.0165 -3.7697 2.3336 15 6 7.1532 -3.0887 3.0565 16 16 7.5496 -4.8397 2.8263 17 6 9.2476 -4.8334 3.2964 18 1 9.7191 -3.9120 3.6049 19 6 9.9793 -6.0126 3.2703 20 7 9.4049 -7.1354 2.8939 21 14 11.7798 -6.0058 3.7681 22 1 12.1836 -4.6277 4.1464 23 1 11.9766 -6.9143 4.9262 24 1 12.6104 -6.4700 2.6280 25 6 3.3904 -0.8358 1.4487 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.0541 -0.7406 -3.2088 33 1 0.0716 -1.1352 1.9688 34 1 0.8867 -2.2959 3.9801 35 1 3.3054 -2.5335 4.3711 36 1 7.7898 -2.4844 2.4102 37 1 7.3235 -2.8110 4.0966 38 1 9.9164 -7.9594 2.8753 39 1 4.0922 -0.4254 0.7378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589650904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:30 Heat of formation + Delta-G solvation = -167.200186 kcal Electronic energy + Delta-G solvation = -24388.848767 eV Core-core repulsion = 20580.279192 eV Total energy + Delta-G solvation = -3808.569574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.53588 -41.77501 -39.91384 -38.15293 -37.13585 -36.22793 -34.64387 -32.24027 -31.37896 -30.45847 -28.31740 -27.74426 -25.72622 -24.52909 -23.98628 -22.50854 -20.78967 -19.96547 -19.05569 -18.89520 -18.06465 -17.94803 -17.40428 -17.31070 -16.92578 -16.75774 -16.20311 -15.96628 -15.58362 -14.95855 -14.78920 -14.67829 -14.57112 -14.24472 -13.89583 -13.58524 -13.30000 -13.23525 -13.17187 -12.95190 -12.93430 -12.74939 -12.67785 -12.56063 -12.54173 -12.09792 -11.88104 -11.79953 -11.70094 -11.38484 -11.20294 -10.43412 -9.96341 -9.78600 -8.79043 -8.40311 -6.21321 -0.08632 0.17848 0.93948 1.02373 1.14442 1.39641 1.40912 1.55210 1.79873 2.05516 2.20744 2.71796 2.94899 3.17006 3.27133 3.62693 3.70722 3.88700 3.93699 4.02826 4.07889 4.15136 4.24033 4.33721 4.40429 4.54621 4.74238 4.76213 4.83051 4.85019 4.94247 5.13710 5.20859 5.22900 5.29304 5.34759 5.38564 5.40173 5.56418 5.81488 6.15606 6.64955 6.92938 7.01137 8.69390 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.002587 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.036735 B =10821.377783 C =11324.227540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.008 4.008 3 C -0.138 4.138 4 C 0.483 3.517 5 O -0.550 6.550 6 O -0.502 6.502 7 C -0.070 4.070 8 C -0.101 4.101 9 C -0.101 4.101 10 C -0.136 4.136 11 C 0.051 3.949 12 O -0.292 6.292 13 C 0.481 3.519 14 O -0.502 6.502 15 C -0.105 4.105 16 S -0.136 6.136 17 C -0.547 4.547 18 H 0.088 0.912 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 1.003 2.997 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.273 1.273 25 C -0.101 4.101 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.426 0.574 33 H 0.174 0.826 34 H 0.165 0.835 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.273 0.727 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 20.894 -4.566 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.009 4.009 3 C -0.195 4.195 4 C 0.326 3.674 5 O -0.440 6.440 6 O -0.315 6.315 7 C -0.070 4.070 8 C -0.118 4.118 9 C -0.119 4.119 10 C -0.155 4.155 11 C 0.010 3.990 12 O -0.208 6.208 13 C 0.324 3.676 14 O -0.387 6.387 15 C -0.253 4.253 16 S 0.091 5.909 17 C -0.695 4.695 18 H 0.106 0.894 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.824 3.176 22 H -0.180 1.180 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.119 4.119 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.288 0.712 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.539 19.531 -4.737 29.459 hybrid contribution 2.491 -0.084 0.013 2.492 sum -19.048 19.447 -4.724 27.629 Atomic orbital electron populations 1.22047 0.88118 1.03830 1.05932 1.19457 1.00036 0.96334 0.85049 1.21951 1.01134 0.90856 1.05539 1.23757 0.76098 0.81712 0.85851 1.90844 1.37326 1.28040 1.87782 1.84441 1.71810 1.58798 1.16491 1.19431 0.91717 0.99584 0.96287 1.21641 1.01547 0.95751 0.92904 1.21390 0.93816 0.98084 0.98625 1.21579 0.94966 0.99639 0.99290 1.18892 0.80926 1.02602 0.96612 1.84608 1.23065 1.31881 1.81233 1.23592 0.90288 0.80123 0.73547 1.90694 1.62178 1.43973 1.41891 1.23111 0.90567 1.03944 1.07659 1.85626 1.14367 1.02182 1.88767 1.23221 0.95119 0.98565 1.52580 0.89425 1.26160 1.04763 0.93837 0.94247 1.70172 1.39023 1.00031 1.45435 0.84844 0.75575 0.79110 0.78034 1.17960 1.19739 1.19880 1.20887 0.96757 1.00250 0.94017 0.87854 0.89154 0.91686 0.93184 0.88907 0.88748 0.71233 0.80847 0.81727 0.85793 0.85826 0.85281 0.91788 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 7.06 71.98 0.51 -0.68 16 2 C -0.01 -0.12 0.80 -53.67 -0.04 -0.16 16 3 C -0.14 -1.59 8.22 71.98 0.59 -1.00 16 4 C 0.48 10.15 6.79 71.24 0.48 10.63 16 5 O -0.55 -17.69 15.87 21.96 0.35 -17.34 16 6 O -0.50 -6.80 13.23 -51.33 -0.68 -7.48 16 7 C -0.07 -1.54 4.38 -19.88 -0.09 -1.63 16 8 C -0.10 -1.82 8.97 22.28 0.20 -1.62 16 9 C -0.10 -2.13 10.04 22.25 0.22 -1.90 16 10 C -0.14 -3.97 9.31 22.37 0.21 -3.76 16 11 C 0.05 1.70 5.28 22.51 0.12 1.82 16 12 O -0.29 -10.76 10.04 4.60 0.05 -10.72 16 13 C 0.48 20.47 7.75 71.24 0.55 21.02 16 14 O -0.50 -24.89 15.26 21.95 0.34 -24.56 16 15 C -0.10 -4.45 6.27 71.24 0.45 -4.00 16 16 S -0.14 -7.66 20.58 -56.49 -1.16 -8.82 16 17 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 18 H 0.09 4.65 7.80 -2.91 -0.02 4.63 16 19 C 0.01 0.85 5.49 84.86 0.47 1.32 16 20 N -0.91 -55.77 13.22 21.65 0.29 -55.49 16 21 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C -0.10 -2.97 7.87 22.37 0.18 -2.80 16 26 H 0.10 0.39 7.51 -2.39 -0.02 0.37 16 27 H 0.09 0.54 8.11 -2.39 -0.02 0.52 16 28 H 0.06 0.60 7.51 -2.38 -0.02 0.58 16 29 H 0.05 0.73 7.39 -2.38 -0.02 0.72 16 30 H 0.09 0.76 8.11 -2.39 -0.02 0.74 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.43 3.01 9.10 -74.06 -0.67 2.33 16 33 H 0.17 1.66 5.89 -2.91 -0.02 1.64 16 34 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.12 3.61 8.06 -2.91 -0.02 3.58 16 36 H 0.12 4.79 8.14 -2.40 -0.02 4.77 16 37 H 0.13 4.87 8.14 -2.40 -0.02 4.85 16 38 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.12 3.53 7.51 -2.91 -0.02 3.51 16 Total: -1.00 -83.62 354.60 6.11 -77.51 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.42 Total: 14.69 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 4.49 Total: -13.40 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.29 Total: -55.49 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: 0.05 Total: -60.09 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.82 kcal Total: -83.62 6.11 -77.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589650904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.685 kcal (2) G-P(sol) polarization free energy of solvation -83.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds