Wall clock time and date at job start Tue Mar 31 2020 13:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47225 * 2 1 4 4 C 1.46895 * 111.00188 * 75.82953 * 3 2 1 5 5 C 1.50697 * 109.47581 * 199.25351 * 4 3 2 6 6 H 1.07997 * 119.99726 * 355.04233 * 5 4 3 7 7 C 1.37879 * 120.00158 * 175.03854 * 5 4 3 8 8 N 1.31513 * 119.99879 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99715 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47565 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46872 * 120.00384 * 9 7 5 12 12 H 1.48501 * 109.46785 * 240.00230 * 9 7 5 13 13 C 1.40759 * 111.00066 * 199.78097 * 3 2 1 14 14 C 1.38324 * 122.54483 * 295.75913 * 13 3 2 15 15 C 1.34789 * 114.66994 * 179.76502 * 14 13 3 16 16 C 1.47908 * 125.21612 * 180.21073 * 15 14 13 17 17 N 1.34209 * 126.70034 * 359.96488 * 16 15 14 18 18 N 1.28982 * 107.24831 * 179.83568 * 17 16 15 19 19 N 1.28726 * 108.99492 * 0.43920 * 18 17 16 20 20 H 0.96998 * 125.31348 * 179.74737 * 19 18 17 21 21 N 1.28867 * 109.36242 * 359.71584 * 19 18 17 22 22 S 1.75862 * 109.56387 * 0.47291 * 15 14 13 23 23 C 1.33985 * 122.53870 * 116.04853 * 13 3 2 24 24 N 1.48222 * 125.11803 * 0.02562 * 23 13 3 25 25 O 1.21800 * 119.99843 * 359.97438 * 24 23 13 26 26 O 1.21797 * 120.00011 * 180.02562 * 24 23 13 27 27 H 1.09002 * 109.47375 * 54.85056 * 1 2 3 28 28 H 1.08998 * 109.47205 * 174.85710 * 1 2 3 29 29 H 1.09000 * 109.47187 * 294.85521 * 1 2 3 30 30 H 1.09002 * 109.47138 * 240.00243 * 2 1 3 31 31 H 1.09001 * 109.47205 * 120.00250 * 2 1 3 32 32 H 1.09003 * 109.47267 * 79.25228 * 4 3 2 33 33 H 1.09002 * 109.46931 * 319.25862 * 4 3 2 34 34 H 0.97002 * 119.99448 * 180.02562 * 8 7 5 35 35 H 1.07997 * 122.66296 * 0.02562 * 14 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8786 1.9932 1.3296 5 6 1.9305 3.4940 1.2037 6 1 2.1356 3.9487 0.2458 7 6 1.7161 4.2867 2.3113 8 7 1.4668 3.7330 3.4778 9 14 1.7797 6.1471 2.1548 10 1 2.0749 6.5157 0.7469 11 1 0.4696 6.7223 2.5524 12 1 2.8447 6.6821 3.0407 13 6 3.3536 1.4484 -0.4447 14 6 4.3973 0.8604 0.2469 15 6 5.6084 1.0147 -0.3243 16 6 6.8788 0.4798 0.2120 17 7 7.0368 -0.2351 1.3368 18 7 8.2928 -0.5083 1.4431 19 7 8.9202 0.0097 0.4455 20 1 9.8763 -0.0486 0.2930 21 7 8.0794 0.6173 -0.3190 22 16 5.4474 1.9559 -1.8011 23 6 3.7095 2.0876 -1.5672 24 7 2.7785 2.7992 -2.4748 25 8 1.5875 2.8320 -2.2220 26 8 3.2044 3.3503 -3.4740 27 1 -0.3634 0.5916 -0.8403 28 1 -0.3633 -1.0235 -0.0921 29 1 -0.3633 0.4320 0.9325 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.6912 1.6543 1.9723 33 1 0.9239 1.6979 1.7649 34 1 1.3156 4.2907 4.2569 35 1 4.2527 0.3171 1.1690 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590692082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:24 Heat of formation + Delta-G solvation = 175.765887 kcal Electronic energy + Delta-G solvation = -25115.020295 eV Core-core repulsion = 21282.368004 eV Total energy + Delta-G solvation = -3832.652291 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.76697 -41.43512 -39.38122 -35.87781 -35.77267 -34.53644 -33.61175 -32.70135 -30.63791 -29.72246 -27.22404 -26.00141 -24.96500 -23.95777 -22.87606 -22.45285 -21.30165 -19.81074 -19.52085 -18.65116 -17.48124 -17.47232 -16.98402 -16.54561 -16.32441 -15.73413 -14.99997 -14.62518 -14.33119 -14.07123 -13.58354 -13.37398 -12.97011 -12.62922 -12.34639 -11.78126 -11.74580 -11.65266 -11.48928 -11.39019 -11.16681 -11.15886 -10.97388 -10.92634 -10.70425 -10.63472 -10.51648 -10.42438 -9.95010 -9.39517 -9.06075 -8.54058 -8.50875 -7.80419 -6.10885 -4.11629 -0.27745 0.64372 0.76782 1.29415 1.38698 1.88612 2.02130 2.11670 2.61663 3.27620 3.28908 3.36964 3.43953 3.99741 4.28917 4.49677 4.82707 4.97794 5.05445 5.26472 5.33142 5.45320 5.62307 5.73603 5.90405 5.98936 6.02874 6.19167 6.43664 6.72614 6.82439 6.94955 7.00778 7.59614 7.79561 7.83924 7.94592 8.25279 8.28311 8.93805 9.52783 10.99475 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.005100 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.179768 B = 5488.726322 C = 6109.108005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.058 3.942 3 N -0.486 5.486 4 C 0.194 3.806 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.285 1.285 13 C 0.212 3.788 14 C -0.106 4.106 15 C -0.093 4.093 16 C 0.248 3.752 17 N -0.248 5.248 18 N -0.043 5.043 19 N -0.223 5.223 20 H 0.478 0.522 21 N -0.288 5.288 22 S 0.275 5.725 23 C -0.161 4.161 24 N 0.065 4.935 25 O -0.070 6.070 26 O -0.212 6.212 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.001 0.999 33 H 0.053 0.947 34 H 0.262 0.738 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.484 -10.042 -7.372 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 N -0.209 5.209 4 C 0.072 3.928 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.211 1.211 13 C 0.101 3.899 14 C -0.145 4.145 15 C -0.215 4.215 16 C -0.033 4.033 17 N -0.122 5.122 18 N -0.038 5.038 19 N -0.069 5.069 20 H 0.333 0.667 21 N -0.140 5.140 22 S 0.540 5.460 23 C -0.364 4.364 24 N 0.588 4.412 25 O -0.307 6.307 26 O -0.411 6.411 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 14.107 -9.796 -7.892 18.901 hybrid contribution -0.274 0.593 1.237 1.399 sum 13.833 -9.202 -6.654 17.897 Atomic orbital electron populations 1.21716 0.93947 1.00556 1.03720 1.22065 0.97221 0.87741 0.99805 1.60528 1.10287 1.17070 1.33013 1.20053 0.97777 0.95010 0.80002 1.21071 1.48035 0.90186 0.95015 0.92129 1.24900 0.95144 0.98929 0.95128 1.69939 1.48538 1.35429 0.99579 0.86495 0.77774 0.85342 0.78291 1.19587 1.20632 1.21139 1.17848 0.92956 0.89852 0.89233 1.20880 0.89916 1.01542 1.02147 1.21229 0.91747 1.06717 1.01857 1.22246 0.90629 0.98975 0.91476 1.76262 1.06462 1.13894 1.15542 1.78968 1.00078 1.15170 1.09585 1.47680 1.13053 1.32567 1.13599 0.66750 1.75027 0.99745 1.18522 1.20742 1.84359 0.94521 1.48960 1.18123 1.26063 0.95288 1.13658 1.01401 1.42233 1.01037 0.98552 0.99357 1.94660 0.96601 1.61935 1.77461 1.94505 1.82138 1.47458 1.16955 0.91255 0.93046 0.91846 0.92287 0.94418 0.98143 0.92934 0.92810 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.96 37.16 0.37 -1.83 16 2 C 0.06 0.96 5.37 -3.83 -0.02 0.94 16 3 N -0.49 -9.83 3.04 -173.79 -0.53 -10.36 16 4 C 0.19 4.68 4.50 -4.98 -0.02 4.66 16 5 C -0.50 -13.81 8.95 -34.44 -0.31 -14.12 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.21 3.98 4.08 -85.22 -0.35 3.63 16 14 C -0.11 -1.76 8.79 -40.77 -0.36 -2.12 16 15 C -0.09 -1.38 6.44 -36.85 -0.24 -1.61 16 16 C 0.25 3.38 8.16 -156.25 -1.27 2.11 16 17 N -0.25 -3.47 12.51 32.08 0.40 -3.07 16 18 N -0.04 -0.48 13.46 60.35 0.81 0.34 16 19 N -0.22 -1.81 7.90 60.35 0.48 -1.33 16 20 H 0.48 1.32 8.96 -340.33 -3.05 -1.73 16 21 N -0.29 -3.21 12.41 32.10 0.40 -2.81 16 22 S 0.28 4.01 23.10 -107.50 -2.48 1.52 16 23 C -0.16 -2.99 7.52 -11.01 -0.08 -3.07 16 24 N 0.07 1.33 4.46 33.57 0.15 1.48 16 25 O -0.07 -1.54 17.86 -29.46 -0.53 -2.07 16 26 O -0.21 -4.23 19.08 -29.46 -0.56 -4.80 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.08 6.90 -51.93 -0.36 0.72 16 30 H 0.06 0.88 7.92 -51.93 -0.41 0.46 16 31 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 32 H 0.00 0.02 6.98 -51.93 -0.36 -0.34 16 33 H 0.05 1.34 6.57 -51.93 -0.34 0.99 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.17 2.70 7.71 -52.49 -0.40 2.30 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -32.31 332.65 -9.25 -41.55 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -5.73 Total: -7.55 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.38 Total: -9.81 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 2.45 Total: -40.74 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -1.09 Total: -6.86 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -2.48 Total: 1.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.31 -9.25 -41.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590692082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.318 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds