Wall clock time and date at job start Tue Mar 31 2020 13:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47225 * 2 1 4 4 C 1.46895 * 111.00188 * 75.82953 * 3 2 1 5 5 C 1.50697 * 109.47581 * 199.25351 * 4 3 2 6 6 H 1.07997 * 119.99726 * 355.04233 * 5 4 3 7 7 C 1.37879 * 120.00158 * 175.03854 * 5 4 3 8 8 N 1.31513 * 119.99879 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99715 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47565 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46872 * 120.00384 * 9 7 5 12 12 H 1.48501 * 109.46785 * 240.00230 * 9 7 5 13 13 C 1.40759 * 111.00066 * 199.78097 * 3 2 1 14 14 C 1.38324 * 122.54483 * 295.75913 * 13 3 2 15 15 C 1.34789 * 114.66994 * 179.76502 * 14 13 3 16 16 C 1.47908 * 125.21612 * 180.21073 * 15 14 13 17 17 N 1.34209 * 126.70034 * 359.96488 * 16 15 14 18 18 N 1.28982 * 107.24831 * 179.83568 * 17 16 15 19 19 N 1.28726 * 108.99492 * 0.43920 * 18 17 16 20 20 H 0.96998 * 125.31348 * 179.74737 * 19 18 17 21 21 N 1.28867 * 109.36242 * 359.71584 * 19 18 17 22 22 S 1.75862 * 109.56387 * 0.47291 * 15 14 13 23 23 C 1.33985 * 122.53870 * 116.04853 * 13 3 2 24 24 N 1.48222 * 125.11803 * 0.02562 * 23 13 3 25 25 O 1.21800 * 119.99843 * 359.97438 * 24 23 13 26 26 O 1.21797 * 120.00011 * 180.02562 * 24 23 13 27 27 H 1.09002 * 109.47375 * 54.85056 * 1 2 3 28 28 H 1.08998 * 109.47205 * 174.85710 * 1 2 3 29 29 H 1.09000 * 109.47187 * 294.85521 * 1 2 3 30 30 H 1.09002 * 109.47138 * 240.00243 * 2 1 3 31 31 H 1.09001 * 109.47205 * 120.00250 * 2 1 3 32 32 H 1.09003 * 109.47267 * 79.25228 * 4 3 2 33 33 H 1.09002 * 109.46931 * 319.25862 * 4 3 2 34 34 H 0.97002 * 119.99448 * 180.02562 * 8 7 5 35 35 H 1.07997 * 122.66296 * 0.02562 * 14 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8786 1.9932 1.3296 5 6 1.9305 3.4940 1.2037 6 1 2.1356 3.9487 0.2458 7 6 1.7161 4.2867 2.3113 8 7 1.4668 3.7330 3.4778 9 14 1.7797 6.1471 2.1548 10 1 2.0749 6.5157 0.7469 11 1 0.4696 6.7223 2.5524 12 1 2.8447 6.6821 3.0407 13 6 3.3536 1.4484 -0.4447 14 6 4.3973 0.8604 0.2469 15 6 5.6084 1.0147 -0.3243 16 6 6.8788 0.4798 0.2120 17 7 7.0368 -0.2351 1.3368 18 7 8.2928 -0.5083 1.4431 19 7 8.9202 0.0097 0.4455 20 1 9.8763 -0.0486 0.2930 21 7 8.0794 0.6173 -0.3190 22 16 5.4474 1.9559 -1.8011 23 6 3.7095 2.0876 -1.5672 24 7 2.7785 2.7992 -2.4748 25 8 1.5875 2.8320 -2.2220 26 8 3.2044 3.3503 -3.4740 27 1 -0.3634 0.5916 -0.8403 28 1 -0.3633 -1.0235 -0.0921 29 1 -0.3633 0.4320 0.9325 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.6912 1.6543 1.9723 33 1 0.9239 1.6979 1.7649 34 1 1.3156 4.2907 4.2569 35 1 4.2527 0.3171 1.1690 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590692082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:23 Heat of formation + Delta-G solvation = 154.829148 kcal Electronic energy + Delta-G solvation = -25115.928180 eV Core-core repulsion = 21282.368004 eV Total energy + Delta-G solvation = -3833.560176 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.69510 -42.97961 -40.81153 -37.41882 -37.17675 -35.53439 -34.85778 -34.54355 -31.91784 -31.25886 -29.00443 -27.42385 -25.93126 -25.26674 -24.71676 -23.68198 -22.61310 -21.24803 -20.61234 -20.04899 -19.00975 -18.56167 -18.36939 -18.22440 -17.87533 -17.01427 -16.81964 -16.06122 -15.77425 -15.32285 -14.93371 -14.64324 -14.45459 -14.23785 -13.64410 -13.44397 -13.05428 -12.92555 -12.80025 -12.63482 -12.62455 -12.58146 -12.50469 -12.36229 -12.27151 -12.20656 -12.15684 -12.05321 -11.69401 -11.38295 -10.63267 -10.30073 -9.78320 -9.39234 -8.23309 -6.29802 -1.62671 -0.65002 -0.26517 0.01950 0.09237 0.64983 0.76987 1.18150 1.32951 1.35263 1.37090 1.48374 2.25132 2.36288 2.90803 3.02290 3.11453 3.57926 3.73013 3.93502 4.13551 4.23324 4.35449 4.44812 4.62150 4.67057 4.87347 4.98316 5.16454 5.22267 5.25420 5.44919 5.45555 5.61808 5.97135 6.19650 6.39200 6.64934 6.81017 6.86055 7.37845 8.86910 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.005100 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.179768 B = 5488.726322 C = 6109.108005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.056 3.944 3 N -0.498 5.498 4 C 0.213 3.787 5 C -0.514 4.514 6 H 0.044 0.956 7 C 0.016 3.984 8 N -0.923 5.923 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.276 1.276 13 C 0.202 3.798 14 C -0.126 4.126 15 C -0.072 4.072 16 C 0.228 3.772 17 N -0.274 5.274 18 N -0.042 5.042 19 N -0.185 5.185 20 H 0.500 0.500 21 N -0.276 5.276 22 S 0.351 5.649 23 C -0.193 4.193 24 N 0.068 4.932 25 O -0.128 6.128 26 O -0.193 6.193 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.046 0.954 32 H -0.012 1.012 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.149 -10.481 -8.135 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 N -0.221 5.221 4 C 0.089 3.911 5 C -0.552 4.552 6 H 0.063 0.937 7 C -0.183 4.183 8 N -0.564 5.564 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.201 1.201 13 C 0.091 3.909 14 C -0.163 4.163 15 C -0.195 4.195 16 C -0.054 4.054 17 N -0.148 5.148 18 N -0.037 5.037 19 N -0.037 5.037 20 H 0.361 0.639 21 N -0.130 5.130 22 S 0.617 5.383 23 C -0.397 4.397 24 N 0.586 4.414 25 O -0.351 6.351 26 O -0.399 6.399 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.005 0.995 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 16.698 -10.265 -8.617 21.411 hybrid contribution -0.778 0.650 1.375 1.708 sum 15.919 -9.616 -7.243 19.958 Atomic orbital electron populations 1.21679 0.93443 1.02278 1.01923 1.22208 0.97647 0.86099 1.01077 1.60323 1.12046 1.19205 1.30570 1.19611 0.96067 0.93609 0.81829 1.21280 1.47641 0.92076 0.94226 0.93745 1.25585 0.95031 1.02729 0.94950 1.70018 1.49483 1.36768 1.00107 0.85653 0.78202 0.80927 0.77843 1.20211 1.19870 1.20142 1.17952 0.92735 0.90486 0.89768 1.20689 0.90019 1.02994 1.02633 1.21396 0.91893 1.04809 1.01409 1.22056 0.90789 1.00361 0.92158 1.76268 1.07748 1.14647 1.16089 1.78934 0.99403 1.15288 1.10075 1.47772 1.13917 1.30089 1.11952 0.63880 1.74983 0.99186 1.18136 1.20675 1.84080 0.90509 1.47119 1.16625 1.26327 0.97159 1.14483 1.01701 1.42443 1.01193 0.98327 0.99464 1.94670 0.97651 1.64273 1.78463 1.94453 1.81944 1.46532 1.16990 0.92526 0.89578 0.93996 0.90325 0.93575 0.99462 0.94900 0.92559 0.81385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.96 71.98 0.72 -3.55 16 2 C 0.06 1.85 5.37 86.30 0.46 2.31 16 3 N -0.50 -20.75 3.04 -703.74 -2.14 -22.89 16 4 C 0.21 10.65 4.50 85.56 0.39 11.03 16 5 C -0.51 -28.93 8.95 25.60 0.23 -28.70 16 6 H 0.04 2.61 7.81 -2.91 -0.02 2.58 16 7 C 0.02 0.91 5.46 84.66 0.46 1.37 16 8 N -0.92 -53.94 13.29 21.45 0.28 -53.65 16 9 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.20 7.64 4.08 36.76 0.15 7.79 16 14 C -0.13 -4.12 8.79 21.50 0.19 -3.93 16 15 C -0.07 -2.01 6.44 24.04 0.15 -1.85 16 16 C 0.23 5.68 8.16 137.11 1.12 6.80 16 17 N -0.27 -7.18 12.51 -52.41 -0.66 -7.84 16 18 N -0.04 -0.83 13.46 37.02 0.50 -0.33 16 19 N -0.18 -2.36 7.90 37.02 0.29 -2.07 16 20 H 0.50 0.74 8.96 -347.51 -3.11 -2.38 16 21 N -0.28 -5.23 12.41 -52.36 -0.65 -5.88 16 22 S 0.35 9.44 23.10 -56.49 -1.31 8.14 16 23 C -0.19 -7.10 7.52 80.92 0.61 -6.49 16 24 N 0.07 2.79 4.46 -47.69 -0.21 2.58 16 25 O -0.13 -5.83 17.86 18.89 0.34 -5.49 16 26 O -0.19 -7.57 19.08 18.89 0.36 -7.21 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 1.48 6.90 -2.39 -0.02 1.46 16 30 H 0.08 2.29 7.92 -2.39 -0.02 2.27 16 31 H 0.05 1.45 8.00 -2.39 -0.02 1.43 16 32 H -0.01 -0.64 6.98 -2.39 -0.02 -0.65 16 33 H 0.03 1.76 6.57 -2.39 -0.02 1.74 16 34 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 35 H 0.17 5.45 7.71 -2.91 -0.02 5.42 16 Total: -1.00 -70.85 332.65 1.38 -69.47 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: -1.94 Total: -7.00 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.48 Total: -15.22 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.58 Total: -90.09 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.70 Total: -12.70 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 9.44 SS G_CDS: -1.31 Total: 8.14 kcal Total: -70.85 1.38 -69.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590692082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.294 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds