Wall clock time and date at job start Tue Mar 31 2020 14:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99738 * 2 1 4 4 H 1.48492 * 109.47482 * 269.99854 * 3 2 1 5 5 H 1.48506 * 109.47291 * 30.00117 * 3 2 1 6 6 H 1.48506 * 109.46966 * 149.99693 * 3 2 1 7 7 C 1.37872 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99566 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00600 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47397 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99951 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.46808 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.46923 * 180.02562 * 12 11 10 14 14 C 1.76198 * 103.00312 * 180.02562 * 13 12 11 15 15 C 1.39011 * 119.96572 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.06281 * 179.97438 * 15 14 13 17 17 C 1.39383 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.48402 * 120.02942 * 179.97438 * 17 16 15 19 19 N 1.34071 * 126.67648 * 0.02562 * 18 17 16 20 20 N 1.28992 * 107.26400 * 179.97438 * 19 18 17 21 21 N 1.28722 * 108.95079 * 359.97438 * 20 19 18 22 22 H 0.97000 * 125.34089 * 180.02562 * 21 20 19 23 23 N 1.28874 * 109.32634 * 359.97438 * 21 20 19 24 24 C 1.39396 * 119.93830 * 0.25721 * 17 16 15 25 25 C 1.38015 * 119.93423 * 359.48793 * 24 17 16 26 26 F 1.35102 * 119.99784 * 180.23312 * 25 24 17 27 27 H 0.97003 * 120.00218 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46453 * 59.99894 * 9 7 2 29 29 H 1.08993 * 109.46924 * 300.00537 * 9 7 2 30 30 H 1.08999 * 109.46908 * 60.00387 * 11 10 9 31 31 H 1.08995 * 109.47124 * 300.00599 * 11 10 9 32 32 H 1.08999 * 109.47182 * 60.00417 * 12 11 10 33 33 H 1.08995 * 109.47655 * 300.00136 * 12 11 10 34 34 H 1.08001 * 119.96896 * 0.02562 * 15 14 13 35 35 H 1.07992 * 120.00109 * 180.02562 * 16 15 14 36 36 H 1.07993 * 120.03154 * 179.74786 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.5652 -4.8754 -0.0024 12 6 2.6482 -5.9561 -0.0030 13 16 1.8681 -7.5938 -0.0047 14 6 3.2476 -8.6900 -0.0045 15 6 4.5404 -8.1791 -0.0038 16 6 5.6213 -9.0351 -0.0031 17 6 5.4183 -10.4140 -0.0036 18 6 6.5812 -11.3360 -0.0034 19 7 7.8767 -10.9909 -0.0023 20 7 8.5637 -12.0826 -0.0020 21 7 7.7559 -13.0848 -0.0023 22 1 8.0199 -14.0182 -0.0019 23 7 6.5414 -12.6537 -0.0023 24 6 4.1219 -10.9263 -0.0102 25 6 3.0418 -10.0671 -0.0056 26 9 1.7848 -10.5622 -0.0073 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 0.9447 -4.9818 -0.8922 31 1 0.9454 -4.9831 0.8877 32 1 3.2683 -5.8496 0.8870 33 1 3.2683 -5.8486 -0.8929 34 1 4.6983 -7.1107 -0.0029 35 1 6.6253 -8.6371 -0.0021 36 1 3.9628 -11.9945 -0.0148 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:48 Heat of formation + Delta-G solvation = 55.399802 kcal Electronic energy + Delta-G solvation = -22579.781913 eV Core-core repulsion = 18721.990196 eV Total energy + Delta-G solvation = -3857.791717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.15240 -44.88559 -39.34385 -36.97772 -34.83722 -34.07560 -32.93395 -31.64504 -30.86114 -30.76513 -27.10703 -25.43359 -25.07024 -23.48153 -22.46141 -22.31003 -22.05329 -19.72422 -18.20315 -17.57163 -17.36480 -16.76900 -16.45732 -16.06431 -15.96938 -15.57644 -15.53404 -14.65127 -14.53725 -14.40644 -14.01435 -13.43618 -13.43007 -13.35727 -13.04608 -12.88887 -12.40723 -12.06293 -11.82883 -11.81684 -11.56648 -11.47312 -11.24869 -10.95777 -10.86437 -10.80647 -10.35828 -10.13076 -9.84843 -9.28032 -9.19486 -8.94974 -8.28827 -7.62532 -6.16312 -4.18920 0.09636 0.72520 0.77427 1.13215 1.79522 1.80944 2.15881 3.15247 3.15716 3.27682 3.32916 3.37849 3.64657 3.94908 4.30009 4.40249 4.60583 4.68072 4.77328 4.84679 4.97237 5.00517 5.13294 5.20268 5.45597 5.51108 5.57213 5.62598 5.68472 5.85325 5.94495 5.96861 6.02451 6.29758 6.99368 7.33235 7.70261 7.72087 8.05808 8.42749 8.92643 9.46023 10.95010 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.002004 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.317716 B =13968.594375 C =15253.163339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.196 3.804 10 O -0.392 6.392 11 C 0.080 3.920 12 C -0.113 4.113 13 S -0.067 6.067 14 C -0.098 4.098 15 C -0.110 4.110 16 C -0.060 4.060 17 C -0.006 4.006 18 C 0.223 3.777 19 N -0.264 5.264 20 N -0.047 5.047 21 N -0.226 5.226 22 H 0.476 0.524 23 N -0.293 5.293 24 C -0.095 4.095 25 C 0.111 3.889 26 F -0.124 7.124 27 H 0.265 0.735 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.802 -28.127 -0.012 30.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.122 3.878 10 O -0.312 6.312 11 C 0.000 4.000 12 C -0.261 4.261 13 S 0.180 5.820 14 C -0.214 4.214 15 C -0.134 4.134 16 C -0.082 4.082 17 C -0.013 4.013 18 C -0.056 4.056 19 N -0.137 5.137 20 N -0.042 5.042 21 N -0.072 5.072 22 H 0.331 0.669 23 N -0.144 5.144 24 C -0.118 4.118 25 C 0.085 3.915 26 F -0.102 7.102 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.166 -28.243 -0.007 30.370 hybrid contribution 0.905 0.432 -0.009 1.003 sum 12.070 -27.811 -0.016 30.318 Atomic orbital electron populations 1.69962 1.06108 1.27311 1.50181 1.24959 0.95016 0.99500 0.95018 0.86306 0.79635 0.82096 0.78278 1.20410 1.21028 1.19591 1.21024 0.94092 0.89170 1.51304 0.91451 1.20275 0.88710 0.83095 0.95764 1.87845 1.35695 1.12326 1.95327 1.21745 0.92758 0.84749 1.00700 1.23733 1.02655 0.92701 1.07032 1.85748 1.07516 0.98648 1.90050 1.22203 0.99010 0.95511 1.04660 1.21137 0.89798 1.01156 1.01326 1.21142 1.00183 0.90908 0.95992 1.16857 0.87509 0.90752 1.06205 1.23504 0.92694 0.87781 1.01667 1.76125 1.01872 1.18141 1.17597 1.78944 1.20551 0.90171 1.14525 1.47735 1.01073 1.12505 1.45934 0.66921 1.74945 1.04649 1.12854 1.21979 1.20922 0.89947 1.00621 1.00293 1.16733 0.79876 0.89537 1.05397 1.91551 1.37235 1.87667 1.93789 0.92542 0.97378 0.97358 0.93237 0.93243 0.88205 0.88210 0.83446 0.83483 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.93 9.43 -34.44 -0.32 -15.25 16 8 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 9 C 0.20 5.24 5.69 36.01 0.20 5.44 16 10 O -0.39 -9.02 10.33 -35.23 -0.36 -9.38 16 11 C 0.08 1.40 5.95 37.16 0.22 1.62 16 12 C -0.11 -1.54 4.70 37.16 0.17 -1.36 16 13 S -0.07 -0.85 21.52 -107.50 -2.31 -3.16 16 14 C -0.10 -1.11 6.12 -38.92 -0.24 -1.35 16 15 C -0.11 -1.08 9.35 -39.43 -0.37 -1.45 16 16 C -0.06 -0.55 9.69 -39.29 -0.38 -0.93 16 17 C -0.01 -0.06 5.88 -104.85 -0.62 -0.68 16 18 C 0.22 2.11 7.93 -156.29 -1.24 0.87 16 19 N -0.26 -2.67 12.23 32.15 0.39 -2.28 16 20 N -0.05 -0.39 13.47 60.35 0.81 0.43 16 21 N -0.23 -1.23 7.90 60.35 0.48 -0.76 16 22 H 0.48 0.25 8.96 -340.37 -3.05 -2.80 16 23 N -0.29 -2.31 12.08 32.17 0.39 -1.92 16 24 C -0.10 -0.88 9.67 -39.23 -0.38 -1.26 16 25 C 0.11 1.21 7.27 -39.29 -0.29 0.92 16 26 F -0.12 -1.47 16.75 2.25 0.04 -1.44 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.27 7.74 -51.93 -0.40 0.87 16 33 H 0.10 1.27 7.74 -51.93 -0.40 0.87 16 34 H 0.15 1.33 5.86 -52.49 -0.31 1.02 16 35 H 0.15 1.16 7.88 -52.49 -0.41 0.74 16 36 H 0.15 1.16 7.88 -52.49 -0.41 0.74 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -32.97 340.28 -9.28 -42.24 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -6.22 Total: -7.71 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.33 Total: -11.92 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 2.81 Total: -30.23 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.36 Total: -9.38 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.31 Total: -3.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.97 -9.28 -42.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.645 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds