Wall clock time and date at job start Tue Mar 31 2020 14:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99738 * 2 1 4 4 H 1.48492 * 109.47482 * 269.99854 * 3 2 1 5 5 H 1.48506 * 109.47291 * 30.00117 * 3 2 1 6 6 H 1.48506 * 109.46966 * 149.99693 * 3 2 1 7 7 C 1.37872 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99566 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00600 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47397 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99951 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.46808 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.46923 * 180.02562 * 12 11 10 14 14 C 1.76198 * 103.00312 * 180.02562 * 13 12 11 15 15 C 1.39011 * 119.96572 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.06281 * 179.97438 * 15 14 13 17 17 C 1.39383 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.48402 * 120.02942 * 179.97438 * 17 16 15 19 19 N 1.34071 * 126.67648 * 0.02562 * 18 17 16 20 20 N 1.28992 * 107.26400 * 179.97438 * 19 18 17 21 21 N 1.28722 * 108.95079 * 359.97438 * 20 19 18 22 22 H 0.97000 * 125.34089 * 180.02562 * 21 20 19 23 23 N 1.28874 * 109.32634 * 359.97438 * 21 20 19 24 24 C 1.39396 * 119.93830 * 0.25721 * 17 16 15 25 25 C 1.38015 * 119.93423 * 359.48793 * 24 17 16 26 26 F 1.35102 * 119.99784 * 180.23312 * 25 24 17 27 27 H 0.97003 * 120.00218 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46453 * 59.99894 * 9 7 2 29 29 H 1.08993 * 109.46924 * 300.00537 * 9 7 2 30 30 H 1.08999 * 109.46908 * 60.00387 * 11 10 9 31 31 H 1.08995 * 109.47124 * 300.00599 * 11 10 9 32 32 H 1.08999 * 109.47182 * 60.00417 * 12 11 10 33 33 H 1.08995 * 109.47655 * 300.00136 * 12 11 10 34 34 H 1.08001 * 119.96896 * 0.02562 * 15 14 13 35 35 H 1.07992 * 120.00109 * 180.02562 * 16 15 14 36 36 H 1.07993 * 120.03154 * 179.74786 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.5652 -4.8754 -0.0024 12 6 2.6482 -5.9561 -0.0030 13 16 1.8681 -7.5938 -0.0047 14 6 3.2476 -8.6900 -0.0045 15 6 4.5404 -8.1791 -0.0038 16 6 5.6213 -9.0351 -0.0031 17 6 5.4183 -10.4140 -0.0036 18 6 6.5812 -11.3360 -0.0034 19 7 7.8767 -10.9909 -0.0023 20 7 8.5637 -12.0826 -0.0020 21 7 7.7559 -13.0848 -0.0023 22 1 8.0199 -14.0182 -0.0019 23 7 6.5414 -12.6537 -0.0023 24 6 4.1219 -10.9263 -0.0102 25 6 3.0418 -10.0671 -0.0056 26 9 1.7848 -10.5622 -0.0073 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 0.9447 -4.9818 -0.8922 31 1 0.9454 -4.9831 0.8877 32 1 3.2683 -5.8496 0.8870 33 1 3.2683 -5.8486 -0.8929 34 1 4.6983 -7.1107 -0.0029 35 1 6.6253 -8.6371 -0.0021 36 1 3.9628 -11.9945 -0.0148 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:47 Heat of formation + Delta-G solvation = 34.492095 kcal Electronic energy + Delta-G solvation = -22580.688539 eV Core-core repulsion = 18721.990196 eV Total energy + Delta-G solvation = -3858.698344 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.02906 -45.50942 -40.11523 -38.75506 -35.48025 -35.03123 -34.74800 -32.80968 -31.87106 -31.57652 -29.17252 -26.13622 -25.76998 -24.77117 -24.30198 -23.22277 -22.95838 -20.33429 -19.10743 -18.57396 -18.18975 -18.18624 -17.74191 -17.43616 -17.11329 -16.76933 -16.57384 -16.38363 -15.45958 -15.30159 -15.12005 -14.90270 -14.77335 -14.33633 -13.93640 -13.87053 -13.64605 -13.14166 -13.04798 -12.92374 -12.61708 -12.58957 -12.52245 -12.44592 -12.17138 -12.14831 -12.03650 -11.43136 -11.27188 -10.90911 -10.62854 -10.31434 -10.05427 -8.57815 -8.32429 -6.45176 -0.65150 0.00674 0.10290 0.12280 1.08062 1.15378 1.38002 1.42150 1.44556 1.56646 2.35426 2.39955 2.47627 2.93662 3.01818 3.15727 3.19458 3.66206 3.80469 3.87803 3.97085 4.02578 4.12111 4.30676 4.35209 4.40987 4.60860 4.66581 4.71684 4.85241 4.87446 4.94854 5.13970 5.14835 5.52926 5.53985 5.58383 5.92939 6.45377 6.76488 7.06716 7.26311 8.79676 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.002004 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.317716 B =13968.594375 C =15253.163339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.065 0.935 9 C 0.208 3.792 10 O -0.402 6.402 11 C 0.072 3.928 12 C -0.101 4.101 13 S -0.082 6.082 14 C -0.109 4.109 15 C -0.108 4.108 16 C -0.056 4.056 17 C -0.003 4.003 18 C 0.210 3.790 19 N -0.287 5.287 20 N -0.054 5.054 21 N -0.197 5.197 22 H 0.496 0.504 23 N -0.290 5.290 24 C -0.087 4.087 25 C 0.100 3.900 26 F -0.133 7.133 27 H 0.271 0.729 28 H -0.010 1.010 29 H -0.010 1.010 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.629 -28.905 -0.024 31.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.084 0.916 9 C 0.133 3.867 10 O -0.322 6.322 11 C -0.006 4.006 12 C -0.249 4.249 13 S 0.164 5.836 14 C -0.224 4.224 15 C -0.132 4.132 16 C -0.078 4.078 17 C -0.009 4.009 18 C -0.069 4.069 19 N -0.160 5.160 20 N -0.049 5.049 21 N -0.049 5.049 22 H 0.355 0.645 23 N -0.143 5.143 24 C -0.110 4.110 25 C 0.074 3.926 26 F -0.111 7.111 27 H 0.080 0.920 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 13.020 -29.073 -0.020 31.855 hybrid contribution 0.389 0.425 -0.006 0.576 sum 13.408 -28.648 -0.026 31.630 Atomic orbital electron populations 1.70070 1.07766 1.28718 1.50316 1.25979 0.95986 1.03454 0.93908 0.85159 0.78381 0.76912 0.78822 1.19316 1.20079 1.18712 1.21382 0.94272 0.90595 1.52436 0.91637 1.19902 0.88615 0.84240 0.93959 1.87783 1.35433 1.13660 1.95328 1.21967 0.94341 0.83409 1.00882 1.23523 1.01348 0.91981 1.08052 1.85764 1.08645 0.98312 1.90915 1.22182 0.98774 0.95252 1.06229 1.21242 0.89347 1.01717 1.00846 1.21288 1.00529 0.90797 0.95172 1.16954 0.87632 0.91008 1.05354 1.23492 0.92569 0.88249 1.02624 1.76106 1.02186 1.19105 1.18567 1.78895 1.20665 0.90389 1.14930 1.47805 1.00153 1.13252 1.43640 0.64496 1.74913 1.05476 1.12271 1.21638 1.21016 0.89384 1.01165 0.99389 1.16882 0.79949 0.89612 1.06118 1.91527 1.37881 1.87757 1.93968 0.92014 0.99202 0.99183 0.93077 0.93083 0.87228 0.87229 0.82652 0.82195 0.81783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.98 43.66 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.55 -32.09 9.43 25.60 0.24 -31.85 16 8 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 9 C 0.21 11.46 5.69 71.24 0.41 11.87 16 10 O -0.40 -18.81 10.33 -148.98 -1.54 -20.35 16 11 C 0.07 2.58 5.95 71.98 0.43 3.00 16 12 C -0.10 -2.70 4.70 71.98 0.34 -2.36 16 13 S -0.08 -2.07 21.52 -56.49 -1.22 -3.28 16 14 C -0.11 -2.38 6.12 22.70 0.14 -2.24 16 15 C -0.11 -1.98 9.35 22.37 0.21 -1.77 16 16 C -0.06 -0.92 9.69 22.46 0.22 -0.71 16 17 C 0.00 -0.05 5.88 -20.01 -0.12 -0.17 16 18 C 0.21 3.60 7.93 137.35 1.09 4.69 16 19 N -0.29 -5.35 12.23 -52.20 -0.64 -5.99 16 20 N -0.05 -0.79 13.47 37.02 0.50 -0.29 16 21 N -0.20 -1.69 7.90 37.02 0.29 -1.40 16 22 H 0.50 -0.76 8.96 -347.54 -3.12 -3.87 16 23 N -0.29 -3.94 12.08 -52.15 -0.63 -4.57 16 24 C -0.09 -1.49 9.67 22.50 0.22 -1.27 16 25 C 0.10 2.10 7.27 22.46 0.16 2.26 16 26 F -0.13 -3.10 16.75 44.97 0.75 -2.34 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 28 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.11 2.70 7.74 -2.39 -0.02 2.68 16 33 H 0.11 2.70 7.74 -2.39 -0.02 2.68 16 34 H 0.16 2.57 5.86 -2.91 -0.02 2.55 16 35 H 0.16 2.23 7.88 -2.91 -0.02 2.21 16 36 H 0.16 2.24 7.88 -2.91 -0.02 2.22 16 Total: -1.00 -70.47 340.28 1.66 -68.81 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: -1.97 Total: -3.50 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.79 Total: -17.77 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.19 Total: -67.25 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -1.54 Total: -20.35 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.75 Total: -2.34 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -1.22 Total: -3.28 kcal Total: -70.47 1.66 -68.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.302 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds