Wall clock time and date at job start Tue Mar 31 2020 13:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47352 * 2 1 4 4 S 1.81004 * 109.46932 * 239.99475 * 2 1 3 5 5 C 1.76201 * 99.99735 * 70.42317 * 4 2 1 6 6 C 1.39053 * 120.18656 * 5.79241 * 5 4 2 7 7 C 1.37900 * 120.05880 * 179.69637 * 6 5 4 8 8 C 1.38675 * 120.44748 * 0.60263 * 7 6 5 9 9 C 1.37701 * 120.38062 * 359.67051 * 8 7 6 10 10 C 1.39811 * 119.92414 * 0.02806 * 9 8 7 11 11 C 1.47245 * 120.21911 * 180.02562 * 10 9 8 12 12 O 1.21525 * 120.00092 * 179.97438 * 11 10 9 13 13 O 1.34786 * 120.00024 * 359.97438 * 11 10 9 14 14 C 1.45192 * 116.99941 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47221 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47177 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00192 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99628 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00190 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99616 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46770 * 90.00111 * 20 18 16 22 22 H 1.48498 * 109.47112 * 209.99970 * 20 18 16 23 23 H 1.48501 * 109.47319 * 330.00310 * 20 18 16 24 24 C 1.50709 * 109.46661 * 119.99987 * 2 1 3 25 25 O 1.20824 * 119.99824 * 100.00165 * 24 2 1 26 26 O 1.34224 * 119.99769 * 280.27011 * 24 2 1 27 27 H 1.08999 * 109.47138 * 176.94014 * 1 2 3 28 28 H 1.09003 * 109.46829 * 296.94396 * 1 2 3 29 29 H 1.09005 * 109.46938 * 56.94147 * 1 2 3 30 30 H 1.08000 * 119.97084 * 359.97438 * 6 5 4 31 31 H 1.07995 * 119.77765 * 180.29500 * 7 6 5 32 32 H 1.08000 * 119.80667 * 179.69744 * 8 7 6 33 33 H 1.08004 * 120.03919 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47022 * 300.00017 * 14 13 11 35 35 H 1.09003 * 109.47107 * 59.99524 * 14 13 11 36 36 H 1.09008 * 109.47140 * 299.99902 * 15 14 13 37 37 H 1.09003 * 109.47243 * 59.99883 * 15 14 13 38 38 H 0.96997 * 119.99410 * 179.97438 * 19 18 16 39 39 H 0.96693 * 117.00082 * 179.72588 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8534 -1.4778 5 6 1.6871 0.3213 -2.7130 6 6 1.1597 1.5547 -2.3468 7 6 0.8172 2.4745 -3.3155 8 6 0.9831 2.1748 -4.6592 9 6 1.4985 0.9567 -5.0426 10 6 1.8568 0.0149 -4.0734 11 6 2.4091 -1.2894 -4.4761 12 8 2.7197 -2.1049 -3.6303 13 8 2.5701 -1.5787 -5.7826 14 6 3.1205 -2.8828 -6.1060 15 6 3.2280 -3.0285 -7.6252 16 6 3.7998 -4.3819 -7.9608 17 1 4.0600 -5.0694 -7.1697 18 6 3.9898 -4.7426 -9.2780 19 7 3.6724 -3.9055 -10.2414 20 14 4.6992 -6.4198 -9.6939 21 1 3.5947 -7.4012 -9.8435 22 1 5.4604 -6.3337 -10.9661 23 1 5.6063 -6.8581 -8.6029 24 6 2.0323 -0.7105 1.2306 25 8 2.4049 -1.8574 1.1561 26 8 2.0605 -0.0708 2.4102 27 1 -0.3633 -1.0262 -0.0549 28 1 -0.3633 0.4657 0.9161 29 1 -0.3633 0.5606 -0.8613 30 1 1.0223 1.7943 -1.3027 31 1 0.4124 3.4329 -3.0258 32 1 0.7068 2.9010 -5.4094 33 1 1.6257 0.7292 -6.0907 34 1 4.1104 -2.9801 -5.6602 35 1 2.4666 -3.6609 -5.7120 36 1 2.2379 -2.9314 -8.0706 37 1 3.8817 -2.2504 -8.0195 38 1 3.8064 -4.1592 -11.1679 39 1 2.3870 -0.5689 3.1720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593674104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:11 Heat of formation + Delta-G solvation = -149.961906 kcal Electronic energy + Delta-G solvation = -24013.879112 eV Core-core repulsion = 20206.057046 eV Total energy + Delta-G solvation = -3807.822067 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62714 -40.25792 -38.72788 -36.54586 -36.12610 -34.15601 -33.35328 -31.64669 -31.11956 -30.11714 -25.70434 -25.50104 -24.10627 -22.99495 -22.16810 -21.11751 -20.55705 -18.73775 -18.25409 -17.52329 -16.77436 -16.58387 -16.08140 -16.04159 -15.96885 -15.60169 -15.04013 -14.70110 -14.47034 -14.36338 -13.81980 -13.55432 -13.21468 -12.99561 -12.88478 -12.61164 -12.37178 -12.35265 -11.96234 -11.86633 -11.37461 -11.25207 -11.04173 -10.98316 -10.89999 -10.76429 -10.61359 -10.02366 -9.79156 -9.66366 -9.48814 -9.28711 -9.26791 -8.43825 -7.60177 -6.10161 -4.14226 0.52389 0.96688 1.06473 1.77158 2.04173 2.62600 2.66838 3.09955 3.29652 3.35714 3.40648 3.57188 4.26189 4.37198 4.39466 4.53371 4.67420 4.73284 4.84267 5.08399 5.11253 5.17062 5.21936 5.26686 5.32183 5.60621 5.65835 5.87647 6.01560 6.04737 6.09617 6.10248 6.18341 6.53846 6.63666 6.91315 7.44156 7.55091 7.62033 7.86270 8.12628 8.24759 8.91276 9.50206 11.01401 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.002752 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.857079 B =10173.062842 C =11676.318254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 H 0.125 0.875 4 S 0.085 5.915 5 C -0.060 4.060 6 C -0.156 4.156 7 C -0.067 4.067 8 C -0.141 4.141 9 C -0.037 4.037 10 C -0.109 4.109 11 C 0.493 3.507 12 O -0.489 6.489 13 O -0.349 6.349 14 C 0.076 3.924 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.503 3.497 25 O -0.491 6.491 26 O -0.512 6.512 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.122 16.543 21.213 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.281 4.281 3 H 0.143 0.857 4 S 0.331 5.669 5 C -0.175 4.175 6 C -0.180 4.180 7 C -0.087 4.087 8 C -0.162 4.162 9 C -0.057 4.057 10 C -0.117 4.117 11 C 0.338 3.662 12 O -0.381 6.381 13 O -0.265 6.265 14 C 0.003 3.997 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C 0.342 3.658 25 O -0.377 6.377 26 O -0.325 6.325 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -7.455 14.986 20.958 26.821 hybrid contribution 0.051 0.016 0.289 0.294 sum -7.404 15.001 21.246 27.042 Atomic orbital electron populations 1.22099 0.89518 1.04792 1.04080 1.23787 1.02455 1.05496 0.96369 0.85726 1.88080 1.70565 1.18040 0.90182 1.22330 1.00297 0.98256 0.96580 1.21163 1.03720 0.92800 1.00365 1.21269 0.96022 0.98569 0.92871 1.21194 1.01459 0.97276 0.96251 1.21582 0.92232 0.91812 1.00070 1.18836 1.07147 0.94027 0.91723 1.20965 0.76101 0.86779 0.82355 1.90727 1.47310 1.48780 1.51252 1.86574 1.75119 1.40543 1.24230 1.23708 0.97029 0.78065 1.00877 1.19173 0.98595 0.97759 0.85659 1.20979 1.43104 0.99998 0.92321 0.92209 1.24978 0.95374 0.97557 0.96222 1.69971 1.47634 1.35556 0.99737 0.86470 0.79201 0.83736 0.77912 1.20471 1.21058 1.19682 1.22287 0.74641 0.84880 0.83993 1.90809 1.43201 1.18073 1.85586 1.84479 1.79441 1.49353 1.19193 0.90383 0.90783 0.89830 0.84728 0.85137 0.84835 0.83411 0.92104 0.92079 0.95324 0.95326 0.92717 0.72599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.64 37.16 0.32 -0.76 16 2 C -0.15 -1.42 2.47 -27.88 -0.07 -1.49 16 3 H 0.12 0.88 6.54 -51.92 -0.34 0.54 16 4 S 0.08 1.18 17.62 -107.50 -1.89 -0.72 16 5 C -0.06 -0.77 6.03 -38.43 -0.23 -1.00 16 6 C -0.16 -1.42 7.75 -39.40 -0.31 -1.73 16 7 C -0.07 -0.53 10.02 -39.54 -0.40 -0.93 16 8 C -0.14 -1.27 10.02 -39.62 -0.40 -1.67 16 9 C -0.04 -0.45 9.61 -39.19 -0.38 -0.83 16 10 C -0.11 -1.61 5.89 -104.80 -0.62 -2.23 16 11 C 0.49 9.17 7.87 34.39 0.27 9.44 16 12 O -0.49 -10.03 13.56 -19.28 -0.26 -10.29 16 13 O -0.35 -7.06 9.47 -40.73 -0.39 -7.45 16 14 C 0.08 1.70 5.41 37.16 0.20 1.90 16 15 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 16 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.50 5.13 7.50 36.01 0.27 5.40 16 25 O -0.49 -6.90 16.80 -18.75 -0.31 -7.22 16 26 O -0.51 -3.46 13.42 -39.24 -0.53 -3.99 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.56 5.84 -51.93 -0.30 0.26 16 30 H 0.14 0.88 4.57 -52.49 -0.24 0.64 16 31 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.15 1.79 7.61 -52.48 -0.40 1.39 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.41 1.10 9.10 45.56 0.41 1.52 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -34.85 350.84 -8.06 -42.91 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -3.79 Total: -2.48 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.89 Total: -6.93 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.49 Total: -28.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.89 Total: -0.72 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.85 -8.06 -42.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593674104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.052 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds