Wall clock time and date at job start Tue Mar 31 2020 13:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47352 * 2 1 4 4 S 1.81004 * 109.46932 * 239.99475 * 2 1 3 5 5 C 1.76201 * 99.99735 * 70.42317 * 4 2 1 6 6 C 1.39053 * 120.18656 * 5.79241 * 5 4 2 7 7 C 1.37900 * 120.05880 * 179.69637 * 6 5 4 8 8 C 1.38675 * 120.44748 * 0.60263 * 7 6 5 9 9 C 1.37701 * 120.38062 * 359.67051 * 8 7 6 10 10 C 1.39811 * 119.92414 * 0.02806 * 9 8 7 11 11 C 1.47245 * 120.21911 * 180.02562 * 10 9 8 12 12 O 1.21525 * 120.00092 * 179.97438 * 11 10 9 13 13 O 1.34786 * 120.00024 * 359.97438 * 11 10 9 14 14 C 1.45192 * 116.99941 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47221 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47177 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00192 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99628 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00190 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99616 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46770 * 90.00111 * 20 18 16 22 22 H 1.48498 * 109.47112 * 209.99970 * 20 18 16 23 23 H 1.48501 * 109.47319 * 330.00310 * 20 18 16 24 24 C 1.50709 * 109.46661 * 119.99987 * 2 1 3 25 25 O 1.20824 * 119.99824 * 100.00165 * 24 2 1 26 26 O 1.34224 * 119.99769 * 280.27011 * 24 2 1 27 27 H 1.08999 * 109.47138 * 176.94014 * 1 2 3 28 28 H 1.09003 * 109.46829 * 296.94396 * 1 2 3 29 29 H 1.09005 * 109.46938 * 56.94147 * 1 2 3 30 30 H 1.08000 * 119.97084 * 359.97438 * 6 5 4 31 31 H 1.07995 * 119.77765 * 180.29500 * 7 6 5 32 32 H 1.08000 * 119.80667 * 179.69744 * 8 7 6 33 33 H 1.08004 * 120.03919 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47022 * 300.00017 * 14 13 11 35 35 H 1.09003 * 109.47107 * 59.99524 * 14 13 11 36 36 H 1.09008 * 109.47140 * 299.99902 * 15 14 13 37 37 H 1.09003 * 109.47243 * 59.99883 * 15 14 13 38 38 H 0.96997 * 119.99410 * 179.97438 * 19 18 16 39 39 H 0.96693 * 117.00082 * 179.72588 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8534 -1.4778 5 6 1.6871 0.3213 -2.7130 6 6 1.1597 1.5547 -2.3468 7 6 0.8172 2.4745 -3.3155 8 6 0.9831 2.1748 -4.6592 9 6 1.4985 0.9567 -5.0426 10 6 1.8568 0.0149 -4.0734 11 6 2.4091 -1.2894 -4.4761 12 8 2.7197 -2.1049 -3.6303 13 8 2.5701 -1.5787 -5.7826 14 6 3.1205 -2.8828 -6.1060 15 6 3.2280 -3.0285 -7.6252 16 6 3.7998 -4.3819 -7.9608 17 1 4.0600 -5.0694 -7.1697 18 6 3.9898 -4.7426 -9.2780 19 7 3.6724 -3.9055 -10.2414 20 14 4.6992 -6.4198 -9.6939 21 1 3.5947 -7.4012 -9.8435 22 1 5.4604 -6.3337 -10.9661 23 1 5.6063 -6.8581 -8.6029 24 6 2.0323 -0.7105 1.2306 25 8 2.4049 -1.8574 1.1561 26 8 2.0605 -0.0708 2.4102 27 1 -0.3633 -1.0262 -0.0549 28 1 -0.3633 0.4657 0.9161 29 1 -0.3633 0.5606 -0.8613 30 1 1.0223 1.7943 -1.3027 31 1 0.4124 3.4329 -3.0258 32 1 0.7068 2.9010 -5.4094 33 1 1.6257 0.7292 -6.0907 34 1 4.1104 -2.9801 -5.6602 35 1 2.4666 -3.6609 -5.7120 36 1 2.2379 -2.9314 -8.0706 37 1 3.8817 -2.2504 -8.0195 38 1 3.8064 -4.1592 -11.1679 39 1 2.3870 -0.5689 3.1720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593674104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:10 Heat of formation + Delta-G solvation = -171.892709 kcal Electronic energy + Delta-G solvation = -24014.830103 eV Core-core repulsion = 20206.057046 eV Total energy + Delta-G solvation = -3808.773058 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62851 -41.38395 -39.74460 -37.71878 -37.25481 -35.47917 -34.87520 -32.82227 -32.03928 -31.82519 -27.33004 -26.37055 -25.43489 -23.83940 -23.21836 -22.76423 -21.81392 -19.67215 -19.18710 -18.83278 -18.24539 -17.66191 -17.58876 -17.52617 -16.84200 -16.63635 -16.38103 -15.95736 -15.50446 -15.28898 -15.06373 -14.65244 -14.39284 -14.30727 -14.00933 -13.83626 -13.40855 -13.17462 -13.07520 -13.04969 -12.74433 -12.64587 -12.63152 -12.61093 -12.21225 -12.05399 -11.72583 -11.67916 -11.53468 -11.46620 -10.86387 -10.63197 -10.59909 -10.13160 -8.60438 -8.29092 -6.42237 -0.45018 0.15254 0.20391 0.98105 1.18518 1.39440 1.41504 1.46192 1.52475 1.70544 1.94421 2.38748 2.65451 3.05186 3.55103 3.61887 3.69205 3.84936 4.03871 4.09766 4.17654 4.21422 4.32784 4.35680 4.47570 4.60660 4.62945 4.65391 4.83772 5.04991 5.07447 5.19987 5.27010 5.40424 5.43457 5.44669 5.48063 5.70887 5.80271 6.04303 6.62401 6.70991 6.81929 7.27336 8.83632 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.002752 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.857079 B =10173.062842 C =11676.318254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 H 0.156 0.844 4 S -0.012 6.012 5 C -0.057 4.057 6 C -0.148 4.148 7 C -0.045 4.045 8 C -0.131 4.131 9 C -0.051 4.051 10 C -0.144 4.144 11 C 0.486 3.514 12 O -0.518 6.518 13 O -0.356 6.356 14 C 0.092 3.908 15 C 0.034 3.966 16 C -0.552 4.552 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.973 3.027 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.265 1.265 24 C 0.507 3.493 25 O -0.539 6.539 26 O -0.496 6.496 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.180 0.820 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.269 0.731 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 19.281 22.916 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.259 4.259 3 H 0.173 0.827 4 S 0.235 5.765 5 C -0.172 4.172 6 C -0.172 4.172 7 C -0.064 4.064 8 C -0.152 4.152 9 C -0.070 4.070 10 C -0.151 4.151 11 C 0.333 3.667 12 O -0.410 6.410 13 O -0.273 6.273 14 C 0.019 3.981 15 C -0.003 4.003 16 C -0.590 4.590 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.189 1.189 24 C 0.349 3.651 25 O -0.429 6.429 26 O -0.310 6.310 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.185 0.815 31 H 0.198 0.802 32 H 0.184 0.816 33 H 0.155 0.845 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -8.681 17.754 22.691 30.090 hybrid contribution 0.349 -0.625 -0.090 0.722 sum -8.332 17.129 22.600 29.557 Atomic orbital electron populations 1.22122 0.87740 1.04288 1.05996 1.23708 1.03534 1.05647 0.93038 0.82688 1.88351 1.71998 1.21641 0.94513 1.22295 1.01077 0.99046 0.94765 1.21608 1.01967 0.91090 1.02496 1.21848 0.93220 0.99708 0.91660 1.21597 0.99537 0.96043 0.98012 1.21635 0.93267 0.92980 0.99147 1.18749 1.10193 0.92729 0.93468 1.21801 0.75601 0.88310 0.80998 1.90731 1.48588 1.50146 1.51536 1.86552 1.75495 1.39022 1.26227 1.23185 0.96982 0.79522 0.98401 1.18961 0.96721 0.96726 0.87884 1.21355 1.43743 1.00881 0.92996 0.91944 1.25947 0.95424 1.01841 0.95918 1.70086 1.48341 1.37702 1.00296 0.85327 0.78643 0.78447 0.77915 1.19464 1.20122 1.18933 1.22457 0.73507 0.84187 0.84995 1.90805 1.45471 1.20248 1.86364 1.84429 1.78827 1.48895 1.18878 0.92196 0.87874 0.88701 0.81520 0.80236 0.81617 0.84543 0.92454 0.92383 0.97328 0.97353 0.92238 0.70377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.64 71.98 0.62 -1.09 16 2 C -0.13 -2.17 2.47 29.85 0.07 -2.09 16 3 H 0.16 1.57 6.54 -2.39 -0.02 1.56 16 4 S -0.01 -0.35 17.62 -56.49 -1.00 -1.34 16 5 C -0.06 -1.42 6.03 23.01 0.14 -1.28 16 6 C -0.15 -2.11 7.75 22.39 0.17 -1.94 16 7 C -0.04 -0.46 10.02 22.29 0.22 -0.24 16 8 C -0.13 -1.90 10.02 22.25 0.22 -1.68 16 9 C -0.05 -1.21 9.61 22.52 0.22 -0.99 16 10 C -0.14 -4.35 5.89 -19.98 -0.12 -4.47 16 11 C 0.49 19.37 7.87 70.19 0.55 19.93 16 12 O -0.52 -22.90 13.56 19.75 0.27 -22.64 16 13 O -0.36 -15.53 9.47 -56.97 -0.54 -16.07 16 14 C 0.09 4.44 5.41 71.98 0.39 4.83 16 15 C 0.03 1.90 5.35 29.85 0.16 2.06 16 16 C -0.55 -32.29 9.11 25.60 0.23 -32.06 16 17 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.01 0.45 5.46 84.66 0.46 0.92 16 19 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 20 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 C 0.51 9.72 7.50 71.24 0.53 10.25 16 25 O -0.54 -15.53 16.80 21.97 0.37 -15.16 16 26 O -0.50 -5.35 13.42 -51.36 -0.69 -6.04 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.92 5.84 -2.38 -0.01 0.91 16 30 H 0.17 1.26 4.57 -2.91 -0.01 1.24 16 31 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 32 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.14 3.46 7.61 -2.91 -0.02 3.44 16 34 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.06 2.78 8.14 -2.39 -0.02 2.77 16 36 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.43 1.28 9.10 -74.06 -0.67 0.61 16 Total: -1.00 -81.79 350.84 5.03 -76.75 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 0.43 Total: 1.48 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 3.89 Total: -7.84 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -0.59 Total: -59.91 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.00 Total: -1.34 kcal Total: -81.79 5.03 -76.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593674104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.141 kcal (2) G-P(sol) polarization free energy of solvation -81.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds