Wall clock time and date at job start Tue Mar 31 2020 13:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38091 * 119.84706 * 2 1 4 4 C 1.39718 * 120.14936 * 180.30195 * 3 2 1 5 5 C 1.47743 * 120.07608 * 179.71653 * 4 3 2 6 6 O 1.21468 * 120.00440 * 359.72593 * 5 4 3 7 7 O 1.34711 * 120.00226 * 179.72605 * 5 4 3 8 8 C 1.39377 * 119.85054 * 359.44117 * 4 3 2 9 9 C 1.39335 * 119.69161 * 0.27951 * 8 4 3 10 10 C 1.47740 * 120.07403 * 179.97438 * 9 8 4 11 11 O 1.21474 * 120.00256 * 179.97438 * 10 9 8 12 12 O 1.34710 * 120.00278 * 0.02562 * 10 9 8 13 13 C 1.45199 * 117.00163 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46801 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46864 * 180.02562 * 14 13 12 16 16 S 1.80996 * 109.47243 * 180.02562 * 15 14 13 17 17 C 1.76200 * 100.00088 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00171 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47026 * 59.99357 * 21 19 17 23 23 H 1.48496 * 109.47361 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46686 * 299.99798 * 21 19 17 25 25 C 1.38051 * 119.84571 * 179.74413 * 2 1 3 26 26 H 1.08998 * 109.46675 * 270.25536 * 1 2 3 27 27 H 1.08995 * 109.47201 * 30.25200 * 1 2 3 28 28 H 1.09001 * 109.47331 * 150.25856 * 1 2 3 29 29 H 1.08002 * 119.92299 * 0.02562 * 3 2 1 30 30 H 0.96700 * 117.00324 * 180.02562 * 7 5 4 31 31 H 1.07997 * 120.15752 * 180.25160 * 8 4 3 32 32 H 1.08994 * 109.47066 * 299.99252 * 13 12 10 33 33 H 1.08997 * 109.47160 * 59.99395 * 13 12 10 34 34 H 1.09002 * 109.46877 * 299.99405 * 14 13 12 35 35 H 1.08997 * 109.47427 * 59.99964 * 14 13 12 36 36 H 1.09008 * 109.47034 * 299.99747 * 15 14 13 37 37 H 1.08997 * 109.47201 * 59.99736 * 15 14 13 38 38 H 0.96993 * 119.99807 * 180.02562 * 20 19 17 39 39 H 1.08000 * 119.92450 * 359.95673 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.1977 0.0000 4 6 3.5915 1.2051 -0.0064 5 6 4.3251 2.4875 -0.0127 6 8 3.7137 3.5371 -0.0174 7 8 5.6722 2.4929 -0.0132 8 6 4.2916 0.0000 -0.0009 9 6 3.5917 -1.2048 0.0049 10 6 4.3253 -2.4872 0.0101 11 8 3.7138 -3.5368 0.0157 12 8 5.6724 -2.4926 0.0097 13 6 6.3264 -3.7890 0.0156 14 6 7.8440 -3.5945 0.0136 15 6 8.5332 -4.9605 0.0191 16 16 10.3285 -4.7305 0.0175 17 6 10.8524 -6.4128 0.0252 18 1 10.1201 -7.2065 0.0296 19 6 12.2065 -6.7179 0.0268 20 7 13.0992 -5.7505 0.0220 21 14 12.7621 -8.5014 0.0357 22 1 12.2408 -9.1883 -1.1734 23 1 14.2460 -8.5577 0.0354 24 1 12.2409 -9.1760 1.2516 25 6 2.1941 -1.1974 0.0053 26 1 -0.3632 0.0046 1.0277 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3634 -0.8923 -0.5098 29 1 1.6506 2.1309 0.0004 30 1 6.1078 3.3562 -0.0171 31 1 5.3716 -0.0001 -0.0017 32 1 6.0317 -4.3405 0.9083 33 1 6.0310 -4.3490 -0.8716 34 1 8.1384 -3.0431 -0.8794 35 1 8.1397 -3.0343 0.9006 36 1 8.2388 -5.5124 0.9119 37 1 8.2374 -5.5203 -0.8681 38 1 14.0454 -5.9638 0.0227 39 1 1.6503 -2.1305 0.0102 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594289572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:37 Heat of formation + Delta-G solvation = -172.373491 kcal Electronic energy + Delta-G solvation = -23086.576430 eV Core-core repulsion = 19277.782524 eV Total energy + Delta-G solvation = -3808.793906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11082 -40.42954 -39.08763 -36.76691 -36.48789 -33.86000 -33.33392 -32.45669 -32.04484 -27.72722 -26.84542 -25.61504 -25.22318 -24.10807 -21.58907 -21.35769 -20.71682 -18.44396 -18.05367 -17.56570 -17.34085 -16.69735 -16.53421 -16.34096 -16.04858 -15.62896 -14.83183 -14.77640 -14.51045 -14.20630 -14.07681 -13.62843 -13.41206 -12.97240 -12.86183 -12.71544 -12.46195 -12.19863 -12.17175 -12.12786 -11.94031 -11.39314 -11.17368 -11.12843 -11.01186 -10.95842 -10.75399 -10.64777 -10.34039 -9.70345 -9.66455 -9.38517 -9.08179 -8.37931 -6.58100 -6.25929 -3.97214 -0.00276 0.38703 1.81599 2.37164 2.40355 2.53301 3.20316 3.22047 3.24285 3.26634 3.50953 4.05569 4.18675 4.25964 4.39484 4.54237 4.59257 4.71495 4.94561 5.07031 5.10767 5.11797 5.13357 5.17139 5.20358 5.35978 5.44414 5.52729 5.54377 5.71320 5.74318 5.80013 5.89256 6.04594 6.10878 6.12669 6.33557 6.42075 6.63755 7.44876 7.53908 7.57563 8.33326 9.20300 10.82131 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.002022 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.356550 B =13841.058357 C =15167.362811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C -0.024 4.024 4 C -0.138 4.138 5 C 0.532 3.468 6 O -0.514 6.514 7 O -0.506 6.506 8 C -0.008 4.008 9 C -0.129 4.129 10 C 0.509 3.491 11 O -0.504 6.504 12 O -0.349 6.349 13 C 0.074 3.926 14 C -0.098 4.098 15 C -0.115 4.115 16 S -0.123 6.123 17 C -0.519 4.519 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.869 5.869 21 Si 0.920 3.080 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.021 4.021 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.419 0.581 31 H 0.158 0.842 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.268 0.732 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.505 15.291 -0.035 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.042 4.042 4 C -0.139 4.139 5 C 0.376 3.624 6 O -0.404 6.404 7 O -0.318 6.318 8 C -0.027 4.027 9 C -0.131 4.131 10 C 0.353 3.647 11 O -0.393 6.393 12 O -0.265 6.265 13 C -0.001 4.001 14 C -0.137 4.137 15 C -0.263 4.263 16 S 0.105 5.895 17 C -0.667 4.667 18 H 0.091 0.909 19 C -0.138 4.138 20 N -0.505 5.505 21 Si 0.746 3.254 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.039 4.039 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.278 0.722 31 H 0.176 0.824 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.159 15.846 -0.039 28.061 hybrid contribution 0.059 -1.853 0.015 1.854 sum -23.100 13.993 -0.024 27.008 Atomic orbital electron populations 1.20820 0.89435 1.03651 1.03141 1.19807 0.97157 0.91784 1.02046 1.21421 0.92079 0.99042 0.91671 1.18977 0.93340 0.90754 1.10798 1.20699 0.80686 0.89036 0.71985 1.90899 1.69345 1.33739 1.46422 1.84578 1.20645 1.41164 1.85389 1.21880 1.01817 0.89850 0.89125 1.19126 0.93373 0.91082 1.09476 1.20933 0.81593 0.89028 0.73143 1.90849 1.69297 1.33499 1.45668 1.86514 1.19691 1.36894 1.83406 1.23341 0.93049 0.80884 1.02820 1.21298 0.89776 0.98155 1.04437 1.23181 1.02256 0.97523 1.03368 1.84653 0.94202 1.13728 1.96888 1.22652 0.94475 0.90763 1.58832 0.90884 1.25022 0.95598 0.98635 0.94516 1.70006 1.01568 1.31888 1.47008 0.86202 0.77524 0.82800 0.78885 1.19907 1.20798 1.19903 1.21486 0.92183 0.99136 0.91130 0.90486 0.90835 0.90758 0.83719 0.72195 0.82407 0.90915 0.90919 0.90241 0.90236 0.91709 0.91705 0.92182 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.00 36.01 0.36 -0.11 16 2 C -0.11 -0.72 5.87 -104.74 -0.61 -1.34 16 3 C -0.02 -0.18 9.24 -39.08 -0.36 -0.54 16 4 C -0.14 -1.19 5.87 -105.04 -0.62 -1.80 16 5 C 0.53 4.78 8.27 34.62 0.29 5.06 16 6 O -0.51 -5.77 17.12 -19.24 -0.33 -6.10 16 7 O -0.51 -3.52 12.67 -40.52 -0.51 -4.04 16 8 C -0.01 -0.08 9.18 -38.75 -0.36 -0.43 16 9 C -0.13 -1.30 5.87 -105.04 -0.62 -1.91 16 10 C 0.51 6.46 7.90 34.61 0.27 6.73 16 11 O -0.50 -7.48 16.13 -19.25 -0.31 -7.79 16 12 O -0.35 -4.61 9.46 -40.52 -0.38 -4.99 16 13 C 0.07 1.02 5.48 37.16 0.20 1.23 16 14 C -0.10 -1.55 5.60 -26.73 -0.15 -1.69 16 15 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 16 S -0.12 -3.15 21.44 -107.50 -2.30 -5.45 16 17 C -0.52 -14.69 9.50 30.94 0.29 -14.39 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 20 N -0.87 -25.69 13.22 55.49 0.73 -24.95 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C -0.02 -0.17 9.24 -39.08 -0.36 -0.54 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 28 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 29 H 0.15 0.91 7.64 -52.49 -0.40 0.51 16 30 H 0.42 1.08 9.11 45.56 0.42 1.49 16 31 H 0.16 1.41 7.15 -52.49 -0.38 1.04 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 37 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.15 1.11 7.64 -52.49 -0.40 0.71 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -34.42 364.89 -8.28 -42.70 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.10 Total: -1.36 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -1.54 Total: -9.84 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.73 Total: -24.95 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.54 Total: -22.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.42 -8.28 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594289572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.673 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds