Wall clock time and date at job start Tue Mar 31 2020 13:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38091 * 119.84706 * 2 1 4 4 C 1.39718 * 120.14936 * 180.30195 * 3 2 1 5 5 C 1.47743 * 120.07608 * 179.71653 * 4 3 2 6 6 O 1.21468 * 120.00440 * 359.72593 * 5 4 3 7 7 O 1.34711 * 120.00226 * 179.72605 * 5 4 3 8 8 C 1.39377 * 119.85054 * 359.44117 * 4 3 2 9 9 C 1.39335 * 119.69161 * 0.27951 * 8 4 3 10 10 C 1.47740 * 120.07403 * 179.97438 * 9 8 4 11 11 O 1.21474 * 120.00256 * 179.97438 * 10 9 8 12 12 O 1.34710 * 120.00278 * 0.02562 * 10 9 8 13 13 C 1.45199 * 117.00163 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46801 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46864 * 180.02562 * 14 13 12 16 16 S 1.80996 * 109.47243 * 180.02562 * 15 14 13 17 17 C 1.76200 * 100.00088 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00171 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47026 * 59.99357 * 21 19 17 23 23 H 1.48496 * 109.47361 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46686 * 299.99798 * 21 19 17 25 25 C 1.38051 * 119.84571 * 179.74413 * 2 1 3 26 26 H 1.08998 * 109.46675 * 270.25536 * 1 2 3 27 27 H 1.08995 * 109.47201 * 30.25200 * 1 2 3 28 28 H 1.09001 * 109.47331 * 150.25856 * 1 2 3 29 29 H 1.08002 * 119.92299 * 0.02562 * 3 2 1 30 30 H 0.96700 * 117.00324 * 180.02562 * 7 5 4 31 31 H 1.07997 * 120.15752 * 180.25160 * 8 4 3 32 32 H 1.08994 * 109.47066 * 299.99252 * 13 12 10 33 33 H 1.08997 * 109.47160 * 59.99395 * 13 12 10 34 34 H 1.09002 * 109.46877 * 299.99405 * 14 13 12 35 35 H 1.08997 * 109.47427 * 59.99964 * 14 13 12 36 36 H 1.09008 * 109.47034 * 299.99747 * 15 14 13 37 37 H 1.08997 * 109.47201 * 59.99736 * 15 14 13 38 38 H 0.96993 * 119.99807 * 180.02562 * 20 19 17 39 39 H 1.08000 * 119.92450 * 359.95673 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.1977 0.0000 4 6 3.5915 1.2051 -0.0064 5 6 4.3251 2.4875 -0.0127 6 8 3.7137 3.5371 -0.0174 7 8 5.6722 2.4929 -0.0132 8 6 4.2916 0.0000 -0.0009 9 6 3.5917 -1.2048 0.0049 10 6 4.3253 -2.4872 0.0101 11 8 3.7138 -3.5368 0.0157 12 8 5.6724 -2.4926 0.0097 13 6 6.3264 -3.7890 0.0156 14 6 7.8440 -3.5945 0.0136 15 6 8.5332 -4.9605 0.0191 16 16 10.3285 -4.7305 0.0175 17 6 10.8524 -6.4128 0.0252 18 1 10.1201 -7.2065 0.0296 19 6 12.2065 -6.7179 0.0268 20 7 13.0992 -5.7505 0.0220 21 14 12.7621 -8.5014 0.0357 22 1 12.2408 -9.1883 -1.1734 23 1 14.2460 -8.5577 0.0354 24 1 12.2409 -9.1760 1.2516 25 6 2.1941 -1.1974 0.0053 26 1 -0.3632 0.0046 1.0277 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3634 -0.8923 -0.5098 29 1 1.6506 2.1309 0.0004 30 1 6.1078 3.3562 -0.0171 31 1 5.3716 -0.0001 -0.0017 32 1 6.0317 -4.3405 0.9083 33 1 6.0310 -4.3490 -0.8716 34 1 8.1384 -3.0431 -0.8794 35 1 8.1397 -3.0343 0.9006 36 1 8.2388 -5.5124 0.9119 37 1 8.2374 -5.5203 -0.8681 38 1 14.0454 -5.9638 0.0227 39 1 1.6503 -2.1305 0.0102 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594289572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:36 Heat of formation + Delta-G solvation = -192.305413 kcal Electronic energy + Delta-G solvation = -23087.440743 eV Core-core repulsion = 19277.782524 eV Total energy + Delta-G solvation = -3809.658219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91363 -41.27648 -39.79568 -37.84097 -37.15267 -34.99018 -34.58775 -34.11762 -32.76318 -28.47428 -27.98337 -27.49831 -26.01758 -25.00696 -22.75939 -22.16427 -21.57497 -19.58260 -19.14903 -18.74628 -18.39220 -17.78736 -17.23379 -17.16295 -16.89243 -16.73676 -16.32517 -16.07340 -16.01749 -15.08906 -14.73352 -14.68749 -14.29069 -14.13288 -14.09568 -13.81821 -13.21514 -13.11199 -13.07511 -12.92948 -12.81830 -12.74907 -12.63700 -12.60592 -12.41251 -12.40772 -11.91839 -11.72864 -11.54000 -11.46160 -11.13567 -10.39316 -10.35786 -9.97014 -8.67543 -8.37586 -6.14052 -0.68800 -0.29750 1.08770 1.23908 1.38797 1.41475 1.49738 1.58485 1.80727 1.96265 2.27560 2.55377 2.96847 3.24466 3.35329 3.58479 3.77388 3.85330 3.93727 3.96190 4.00602 4.10581 4.15933 4.30074 4.33228 4.49978 4.64813 4.68928 4.71991 4.85865 4.89989 5.02172 5.05422 5.12391 5.19263 5.27927 5.35558 5.40185 5.50915 5.55723 6.17962 6.53123 6.90237 7.04788 8.71397 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.002022 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.356550 B =13841.058357 C =15167.362811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.019 4.019 4 C -0.147 4.147 5 C 0.537 3.463 6 O -0.540 6.540 7 O -0.505 6.505 8 C -0.008 4.008 9 C -0.145 4.145 10 C 0.511 3.489 11 O -0.529 6.529 12 O -0.350 6.350 13 C 0.081 3.919 14 C -0.087 4.087 15 C -0.092 4.092 16 S -0.185 6.185 17 C -0.541 4.541 18 H 0.074 0.926 19 C 0.015 3.985 20 N -0.906 5.906 21 Si 0.994 3.006 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.021 4.021 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.158 0.842 30 H 0.436 0.564 31 H 0.156 0.844 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.272 0.728 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.191 15.107 -0.030 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.037 4.037 4 C -0.148 4.148 5 C 0.382 3.618 6 O -0.433 6.433 7 O -0.319 6.319 8 C -0.027 4.027 9 C -0.146 4.146 10 C 0.357 3.643 11 O -0.420 6.420 12 O -0.267 6.267 13 C 0.006 3.994 14 C -0.125 4.125 15 C -0.241 4.241 16 S 0.044 5.956 17 C -0.688 4.688 18 H 0.093 0.907 19 C -0.190 4.190 20 N -0.542 5.542 21 Si 0.815 3.185 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.190 1.190 25 C -0.039 4.039 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.176 0.824 30 H 0.299 0.701 31 H 0.174 0.826 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.835 15.683 -0.034 29.372 hybrid contribution 0.496 -1.691 0.014 1.762 sum -24.339 13.992 -0.020 28.075 Atomic orbital electron populations 1.20919 0.87247 1.04742 1.04165 1.20069 0.98557 0.90787 1.00423 1.21663 0.91678 0.99892 0.90440 1.19067 0.94003 0.90395 1.11328 1.20728 0.81095 0.88720 0.71242 1.90887 1.69926 1.34520 1.47924 1.84552 1.19825 1.42782 1.84779 1.21814 1.01765 0.89827 0.89257 1.19051 0.93977 0.89952 1.11587 1.21366 0.81077 0.89731 0.72144 1.90832 1.69495 1.34542 1.47147 1.86501 1.20360 1.36249 1.83556 1.23103 0.91617 0.81368 1.03312 1.21113 0.90932 0.95856 1.04598 1.23067 0.97413 0.99849 1.03732 1.84632 1.00158 1.13770 1.97063 1.23023 0.95163 0.91632 1.59030 0.90739 1.26065 0.95603 1.03556 0.93763 1.70139 1.01967 1.34319 1.47823 0.85070 0.77264 0.76774 0.79342 1.18958 1.20018 1.18950 1.21641 0.91477 1.00104 0.90707 0.89378 0.89532 0.89955 0.82437 0.70101 0.82620 0.90475 0.90480 0.90131 0.90126 0.91273 0.91265 0.91922 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.00 71.24 0.71 0.09 16 2 C -0.10 -1.11 5.87 -19.94 -0.12 -1.23 16 3 C -0.02 -0.24 9.24 22.59 0.21 -0.03 16 4 C -0.15 -2.37 5.87 -20.13 -0.12 -2.49 16 5 C 0.54 9.16 8.27 70.34 0.58 9.74 16 6 O -0.54 -11.65 17.12 19.94 0.34 -11.31 16 7 O -0.51 -6.55 12.67 -56.21 -0.71 -7.26 16 8 C -0.01 -0.15 9.18 22.81 0.21 0.06 16 9 C -0.14 -2.79 5.87 -20.13 -0.12 -2.90 16 10 C 0.51 12.67 7.90 70.33 0.56 13.22 16 11 O -0.53 -15.40 16.13 19.92 0.32 -15.08 16 12 O -0.35 -9.00 9.46 -56.20 -0.53 -9.54 16 13 C 0.08 2.17 5.48 71.98 0.39 2.56 16 14 C -0.09 -2.66 5.60 30.60 0.17 -2.49 16 15 C -0.09 -3.54 5.67 71.98 0.41 -3.13 16 16 S -0.18 -9.63 21.44 -56.49 -1.21 -10.84 16 17 C -0.54 -30.82 9.50 67.95 0.65 -30.17 16 18 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 19 C 0.02 0.86 5.49 84.86 0.47 1.33 16 20 N -0.91 -54.18 13.22 21.65 0.29 -53.90 16 21 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 C -0.02 -0.32 9.24 22.59 0.21 -0.11 16 26 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.09 0.28 8.08 -2.39 -0.02 0.27 16 28 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 29 H 0.16 1.65 7.64 -2.91 -0.02 1.62 16 30 H 0.44 1.77 9.11 -74.06 -0.67 1.09 16 31 H 0.16 2.73 7.15 -2.91 -0.02 2.71 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 38 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.15 2.09 7.64 -2.91 -0.02 2.07 16 Total: -1.00 -73.95 364.89 5.14 -68.81 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.41 Total: 9.12 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 4.21 Total: -15.56 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.29 Total: -53.90 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.58 Total: -43.18 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.21 Total: -10.84 kcal Total: -73.95 5.14 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594289572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.499 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds