Wall clock time and date at job start Tue Mar 31 2020 13:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47215 * 2 1 4 4 H 1.09003 * 109.47406 * 54.99534 * 3 2 1 5 5 C 1.52999 * 109.47376 * 175.00324 * 3 2 1 6 6 O 1.45199 * 109.47413 * 185.00152 * 5 3 2 7 7 C 1.34784 * 116.99809 * 180.02562 * 6 5 3 8 8 O 1.21535 * 120.00084 * 359.97438 * 7 6 5 9 9 C 1.47282 * 119.99938 * 179.72103 * 7 6 5 10 10 C 1.39752 * 120.21816 * 0.27385 * 9 7 6 11 11 C 1.37781 * 119.92779 * 180.02562 * 10 9 7 12 12 C 1.38669 * 120.39335 * 359.97438 * 11 10 9 13 13 C 1.37899 * 120.45317 * 0.02562 * 12 11 10 14 14 C 1.39114 * 120.05619 * 359.71648 * 13 12 11 15 15 S 1.76202 * 120.19680 * 180.30359 * 14 13 12 16 16 C 1.76196 * 99.99903 * 6.83973 * 15 14 13 17 17 H 1.08005 * 120.00337 * 5.65329 * 16 15 14 18 18 C 1.38821 * 119.99908 * 185.65379 * 16 15 14 19 19 N 1.31544 * 119.99693 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99803 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46830 * 90.00181 * 20 18 16 22 22 H 1.48501 * 109.47045 * 209.99584 * 20 18 16 23 23 H 1.48493 * 109.47315 * 330.00280 * 20 18 16 24 24 C 1.50709 * 109.47113 * 294.99832 * 3 2 1 25 25 O 1.20822 * 119.99816 * 240.00083 * 24 3 2 26 26 O 1.34226 * 119.99673 * 60.00318 * 24 3 2 27 27 H 1.08997 * 109.47677 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46882 * 300.00451 * 1 2 3 29 29 H 1.08997 * 109.47245 * 59.99988 * 1 2 3 30 30 H 1.09003 * 109.46882 * 239.99549 * 2 1 3 31 31 H 1.09005 * 109.46964 * 119.99839 * 2 1 3 32 32 H 1.08994 * 109.47440 * 64.99357 * 5 3 2 33 33 H 1.09004 * 109.46488 * 304.99780 * 5 3 2 34 34 H 1.08000 * 120.03608 * 359.97438 * 10 9 7 35 35 H 1.08002 * 119.80059 * 179.97438 * 11 10 9 36 36 H 1.08003 * 119.77214 * 179.97438 * 12 11 10 37 37 H 1.08005 * 119.97643 * 180.02562 * 13 12 11 38 38 H 0.97008 * 119.99413 * 179.97438 * 19 18 16 39 39 H 0.96701 * 116.99825 * 180.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1256 6 8 4.0391 2.8115 0.2447 7 6 5.3698 2.9894 0.3641 8 8 6.1133 2.0280 0.3691 9 6 5.9232 4.3490 0.4830 10 6 5.0724 5.4577 0.4782 11 6 5.5967 6.7270 0.5892 12 6 6.9659 6.9128 0.7064 13 6 7.8201 5.8302 0.7129 14 6 7.3106 4.5400 0.6074 15 16 8.3980 3.1537 0.6233 16 6 9.9193 3.9625 0.9921 17 1 9.9282 5.0179 1.2211 18 6 11.1066 3.2430 0.9885 19 7 12.2424 3.8469 1.2634 20 14 11.0912 1.4177 0.5918 21 1 11.2610 1.2276 -0.8712 22 1 12.2035 0.7456 1.3106 23 1 9.7973 0.8288 1.0206 24 6 1.6414 2.1162 -1.2878 25 8 2.4898 2.5530 -2.0289 26 8 0.3437 2.2311 -1.6113 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0029 0.9835 -0.7596 33 1 3.8570 0.8800 1.0113 34 1 4.0052 5.3197 0.3867 35 1 4.9373 7.5824 0.5848 36 1 7.3660 7.9122 0.7924 37 1 8.8852 5.9838 0.8051 38 1 13.0719 3.3441 1.2612 39 1 0.1371 2.6706 -2.4476 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595182877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:04 Heat of formation + Delta-G solvation = -157.217715 kcal Electronic energy + Delta-G solvation = -24603.959779 eV Core-core repulsion = 20795.823077 eV Total energy + Delta-G solvation = -3808.136702 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76508 -39.86318 -37.99903 -36.56635 -36.13796 -35.15657 -32.76698 -31.02279 -30.43518 -29.76665 -25.96255 -25.41925 -23.86898 -22.98008 -22.05857 -20.63555 -20.53490 -18.36736 -18.22156 -17.45079 -17.22505 -16.64703 -15.94043 -15.81902 -15.57073 -15.19657 -14.53645 -14.24612 -14.17719 -13.84233 -13.67655 -13.53740 -13.36514 -12.82382 -12.69261 -12.24479 -12.02361 -11.94908 -11.90941 -11.63981 -11.38696 -11.36117 -11.22357 -11.16396 -10.92876 -10.62508 -10.56643 -10.39144 -10.17543 -9.74891 -9.49161 -8.88608 -8.48413 -8.40500 -6.88647 -6.53026 -4.25419 1.27679 1.92301 2.04646 2.74617 2.77501 2.90311 3.13838 3.17573 3.32040 3.40968 4.10291 4.26512 4.32362 4.44603 4.56794 4.60665 4.90195 4.93359 5.04855 5.12348 5.22191 5.32406 5.38576 5.42429 5.52054 5.57854 5.60240 5.76040 5.87531 6.04680 6.07559 6.20982 6.29854 6.51622 6.70118 6.77192 6.97968 7.03702 7.43460 7.70377 7.71411 8.29306 8.30048 8.90419 10.54039 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.003555 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.211978 B = 7875.159882 C = 9285.099139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 C -0.079 4.079 4 H 0.121 0.879 5 C 0.080 3.920 6 O -0.353 6.353 7 C 0.504 3.496 8 O -0.488 6.488 9 C -0.159 4.159 10 C -0.041 4.041 11 C -0.182 4.182 12 C -0.068 4.068 13 C -0.148 4.148 14 C -0.027 4.027 15 S 0.084 5.916 16 C -0.578 4.578 17 H 0.108 0.892 18 C 0.104 3.896 19 N -0.860 5.860 20 Si 0.850 3.150 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.235 1.235 24 C 0.481 3.519 25 O -0.496 6.496 26 O -0.514 6.514 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.149 0.851 38 H 0.276 0.724 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.150 -3.387 -2.146 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.138 0.862 5 C 0.005 3.995 6 O -0.271 6.271 7 C 0.349 3.651 8 O -0.377 6.377 9 C -0.172 4.172 10 C -0.060 4.060 11 C -0.206 4.206 12 C -0.090 4.090 13 C -0.172 4.172 14 C -0.146 4.146 15 S 0.346 5.654 16 C -0.724 4.724 17 H 0.125 0.875 18 C -0.107 4.107 19 N -0.493 5.493 20 Si 0.673 3.327 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.158 1.158 24 C 0.322 3.678 25 O -0.381 6.381 26 O -0.327 6.327 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.166 0.834 38 H 0.086 0.914 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -22.286 -5.223 -2.128 22.989 hybrid contribution 0.449 0.933 -0.504 1.152 sum -21.837 -4.289 -2.632 22.409 Atomic orbital electron populations 1.21979 0.94016 1.02127 1.03716 1.21464 0.97461 0.92332 1.03922 1.21234 0.95626 0.98360 0.94569 0.86160 1.22760 0.90854 0.82294 1.03554 1.86510 1.25567 1.30381 1.84635 1.21081 0.79723 0.90173 0.74089 1.90817 1.58514 1.42175 1.46239 1.18352 0.92057 0.89745 1.17022 1.21085 0.98685 0.91682 0.94575 1.20792 0.95234 0.96420 1.08110 1.21203 0.93396 0.98386 0.96015 1.21532 1.01644 0.90722 1.03330 1.22505 0.95211 0.99760 0.97095 1.84058 0.99281 1.05854 1.76216 1.23482 0.92764 1.01317 1.54820 0.87452 1.24810 0.94266 0.99002 0.92671 1.69902 0.98331 1.37155 1.43913 0.86877 0.80845 0.84606 0.80336 1.18655 1.19253 1.15847 1.23265 0.79975 0.76678 0.87932 1.90799 1.51515 1.44567 1.51262 1.84587 1.28394 1.74300 1.45383 0.92348 0.92322 0.90350 0.90967 0.89724 0.90322 0.89662 0.85805 0.86517 0.86375 0.83369 0.91418 0.73557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.55 37.16 0.36 -0.59 16 2 C -0.11 -0.78 5.39 -26.73 -0.14 -0.92 16 3 C -0.08 -0.73 2.57 -91.77 -0.24 -0.96 16 4 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 5 C 0.08 1.02 4.39 37.16 0.16 1.19 16 6 O -0.35 -5.78 8.72 -45.95 -0.40 -6.18 16 7 C 0.50 10.03 7.87 34.41 0.27 10.30 16 8 O -0.49 -10.86 13.57 -19.29 -0.26 -11.12 16 9 C -0.16 -3.24 5.89 -104.77 -0.62 -3.85 16 10 C -0.04 -0.69 9.61 -39.18 -0.38 -1.07 16 11 C -0.18 -2.85 10.02 -39.59 -0.40 -3.25 16 12 C -0.07 -1.16 10.02 -39.55 -0.40 -1.56 16 13 C -0.15 -3.11 9.22 -39.38 -0.36 -3.47 16 14 C -0.03 -0.62 6.15 -38.37 -0.24 -0.85 16 15 S 0.08 2.15 16.54 -107.50 -1.78 0.37 16 16 C -0.58 -16.13 9.54 30.95 0.30 -15.83 16 17 H 0.11 3.08 5.21 -52.48 -0.27 2.81 16 18 C 0.10 2.92 5.50 -17.46 -0.10 2.82 16 19 N -0.86 -24.86 13.96 55.49 0.77 -24.09 16 20 Si 0.85 20.72 27.74 -169.99 -4.71 16.00 16 21 H -0.26 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.23 -5.70 6.74 56.52 0.38 -5.32 16 24 C 0.48 5.10 7.48 36.01 0.27 5.37 16 25 O -0.50 -7.41 16.18 -23.94 -0.39 -7.80 16 26 O -0.51 -3.66 10.57 -39.25 -0.41 -4.08 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.50 5.46 -51.93 -0.28 0.21 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.12 1.81 7.61 -52.49 -0.40 1.41 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.15 3.34 5.04 -52.48 -0.26 3.08 16 38 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.41 1.45 9.10 45.56 0.41 1.86 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -33.85 345.08 -7.25 -41.10 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.76 Total: 3.27 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.51 Total: -12.67 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.77 Total: -24.09 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.46 Total: -29.18 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.71 Total: 16.00 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.78 Total: 0.37 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.85 -7.25 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595182877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.122 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds