Wall clock time and date at job start Tue Mar 31 2020 13:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47215 * 2 1 4 4 H 1.09003 * 109.47406 * 54.99534 * 3 2 1 5 5 C 1.52999 * 109.47376 * 175.00324 * 3 2 1 6 6 O 1.45199 * 109.47413 * 185.00152 * 5 3 2 7 7 C 1.34784 * 116.99809 * 180.02562 * 6 5 3 8 8 O 1.21535 * 120.00084 * 359.97438 * 7 6 5 9 9 C 1.47282 * 119.99938 * 179.72103 * 7 6 5 10 10 C 1.39752 * 120.21816 * 0.27385 * 9 7 6 11 11 C 1.37781 * 119.92779 * 180.02562 * 10 9 7 12 12 C 1.38669 * 120.39335 * 359.97438 * 11 10 9 13 13 C 1.37899 * 120.45317 * 0.02562 * 12 11 10 14 14 C 1.39114 * 120.05619 * 359.71648 * 13 12 11 15 15 S 1.76202 * 120.19680 * 180.30359 * 14 13 12 16 16 C 1.76196 * 99.99903 * 6.83973 * 15 14 13 17 17 H 1.08005 * 120.00337 * 5.65329 * 16 15 14 18 18 C 1.38821 * 119.99908 * 185.65379 * 16 15 14 19 19 N 1.31544 * 119.99693 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99803 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46830 * 90.00181 * 20 18 16 22 22 H 1.48501 * 109.47045 * 209.99584 * 20 18 16 23 23 H 1.48493 * 109.47315 * 330.00280 * 20 18 16 24 24 C 1.50709 * 109.47113 * 294.99832 * 3 2 1 25 25 O 1.20822 * 119.99816 * 240.00083 * 24 3 2 26 26 O 1.34226 * 119.99673 * 60.00318 * 24 3 2 27 27 H 1.08997 * 109.47677 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46882 * 300.00451 * 1 2 3 29 29 H 1.08997 * 109.47245 * 59.99988 * 1 2 3 30 30 H 1.09003 * 109.46882 * 239.99549 * 2 1 3 31 31 H 1.09005 * 109.46964 * 119.99839 * 2 1 3 32 32 H 1.08994 * 109.47440 * 64.99357 * 5 3 2 33 33 H 1.09004 * 109.46488 * 304.99780 * 5 3 2 34 34 H 1.08000 * 120.03608 * 359.97438 * 10 9 7 35 35 H 1.08002 * 119.80059 * 179.97438 * 11 10 9 36 36 H 1.08003 * 119.77214 * 179.97438 * 12 11 10 37 37 H 1.08005 * 119.97643 * 180.02562 * 13 12 11 38 38 H 0.97008 * 119.99413 * 179.97438 * 19 18 16 39 39 H 0.96701 * 116.99825 * 180.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1256 6 8 4.0391 2.8115 0.2447 7 6 5.3698 2.9894 0.3641 8 8 6.1133 2.0280 0.3691 9 6 5.9232 4.3490 0.4830 10 6 5.0724 5.4577 0.4782 11 6 5.5967 6.7270 0.5892 12 6 6.9659 6.9128 0.7064 13 6 7.8201 5.8302 0.7129 14 6 7.3106 4.5400 0.6074 15 16 8.3980 3.1537 0.6233 16 6 9.9193 3.9625 0.9921 17 1 9.9282 5.0179 1.2211 18 6 11.1066 3.2430 0.9885 19 7 12.2424 3.8469 1.2634 20 14 11.0912 1.4177 0.5918 21 1 11.2610 1.2276 -0.8712 22 1 12.2035 0.7456 1.3106 23 1 9.7973 0.8288 1.0206 24 6 1.6414 2.1162 -1.2878 25 8 2.4898 2.5530 -2.0289 26 8 0.3437 2.2311 -1.6113 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0029 0.9835 -0.7596 33 1 3.8570 0.8800 1.0113 34 1 4.0052 5.3197 0.3867 35 1 4.9373 7.5824 0.5848 36 1 7.3660 7.9122 0.7924 37 1 8.8852 5.9838 0.8051 38 1 13.0719 3.3441 1.2612 39 1 0.1371 2.6706 -2.4476 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595182877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:03 Heat of formation + Delta-G solvation = -178.474583 kcal Electronic energy + Delta-G solvation = -24604.881546 eV Core-core repulsion = 20795.823077 eV Total energy + Delta-G solvation = -3809.058469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78204 -41.15104 -39.46830 -37.72954 -37.04096 -36.05974 -34.85443 -32.48356 -31.96797 -30.58844 -28.03276 -26.47734 -25.02993 -23.85629 -23.53186 -22.08298 -21.34786 -20.02073 -19.15683 -18.85127 -18.25138 -18.13384 -17.47565 -17.07589 -17.02130 -16.57228 -15.94126 -15.69601 -15.21374 -15.02414 -14.89196 -14.63757 -14.47731 -14.28586 -13.91095 -13.72422 -13.47180 -13.15289 -13.14283 -13.08944 -12.64697 -12.54054 -12.42349 -12.29977 -12.04547 -11.82266 -11.79488 -11.67614 -11.51907 -11.39431 -11.37429 -10.65081 -10.30873 -9.98602 -8.76959 -8.62402 -6.36040 -0.24996 0.41050 0.94532 1.22591 1.22959 1.38150 1.51058 1.59302 1.64483 2.06091 2.12946 2.58275 2.73492 2.87026 3.37095 3.66143 3.89908 3.91737 4.04769 4.18274 4.24775 4.31352 4.46344 4.51989 4.54518 4.55764 4.67453 4.69843 4.90590 5.03265 5.15258 5.26734 5.27498 5.31690 5.46186 5.54737 5.58853 5.63509 5.65822 5.98453 6.14021 6.77877 6.80930 7.02913 8.48613 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.003555 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.211978 B = 7875.159882 C = 9285.099139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.072 4.072 4 H 0.143 0.857 5 C 0.071 3.929 6 O -0.344 6.344 7 C 0.504 3.496 8 O -0.518 6.518 9 C -0.168 4.168 10 C -0.036 4.036 11 C -0.152 4.152 12 C -0.057 4.057 13 C -0.170 4.170 14 C -0.047 4.047 15 S 0.026 5.974 16 C -0.585 4.585 17 H 0.084 0.916 18 C 0.056 3.944 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.259 1.259 22 H -0.250 1.250 23 H -0.238 1.238 24 C 0.487 3.513 25 O -0.547 6.547 26 O -0.499 6.499 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.121 0.879 38 H 0.281 0.719 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.380 -2.562 -2.049 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C -0.091 4.091 4 H 0.160 0.840 5 C -0.003 4.003 6 O -0.261 6.261 7 C 0.351 3.649 8 O -0.409 6.409 9 C -0.178 4.178 10 C -0.055 4.055 11 C -0.174 4.174 12 C -0.078 4.078 13 C -0.194 4.194 14 C -0.164 4.164 15 S 0.282 5.718 16 C -0.731 4.731 17 H 0.102 0.898 18 C -0.151 4.151 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.183 1.183 22 H -0.174 1.174 23 H -0.163 1.163 24 C 0.330 3.670 25 O -0.437 6.437 26 O -0.312 6.312 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.173 0.827 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -26.628 -4.347 -2.035 27.057 hybrid contribution 1.313 0.909 -0.576 1.698 sum -25.315 -3.438 -2.611 25.681 Atomic orbital electron populations 1.21957 0.92871 1.02854 1.03825 1.21503 0.98267 0.90556 1.04472 1.21293 0.92780 1.00223 0.94764 0.83964 1.23107 0.93324 0.80466 1.03364 1.86478 1.23241 1.32674 1.83719 1.21166 0.80746 0.89806 0.73225 1.90801 1.59545 1.43070 1.47495 1.18698 0.91497 0.91411 1.16224 1.21527 0.99873 0.91059 0.93060 1.21422 0.94982 0.97521 1.03458 1.21637 0.93842 0.98692 0.93626 1.21478 1.01211 0.91627 1.05131 1.22502 0.95670 0.99005 0.99218 1.83944 0.99234 1.08257 1.80325 1.23568 0.94223 1.00525 1.54771 0.89797 1.25566 0.93951 1.02866 0.92713 1.69973 0.98980 1.38794 1.46129 0.86064 0.80973 0.80129 0.80326 1.18311 1.17398 1.16251 1.23482 0.80333 0.75519 0.87680 1.90793 1.52994 1.46980 1.52917 1.84552 1.26268 1.73913 1.46488 0.91391 0.91545 0.90838 0.91451 0.88298 0.92109 0.88452 0.82546 0.81175 0.82705 0.86096 0.90963 0.71518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.55 71.98 0.69 -0.66 16 2 C -0.11 -1.22 5.39 30.59 0.16 -1.05 16 3 C -0.07 -1.14 2.57 -11.54 -0.03 -1.17 16 4 H 0.14 1.68 8.14 -2.39 -0.02 1.67 16 5 C 0.07 1.75 4.39 71.98 0.32 2.06 16 6 O -0.34 -10.76 8.72 -51.96 -0.45 -11.22 16 7 C 0.50 19.95 7.87 70.20 0.55 20.51 16 8 O -0.52 -23.63 13.57 19.72 0.27 -23.37 16 9 C -0.17 -6.64 5.89 -19.96 -0.12 -6.76 16 10 C -0.04 -1.07 9.61 22.53 0.22 -0.86 16 11 C -0.15 -3.93 10.02 22.26 0.22 -3.71 16 12 C -0.06 -1.77 10.02 22.29 0.22 -1.55 16 13 C -0.17 -7.21 9.22 22.40 0.21 -7.01 16 14 C -0.05 -2.18 6.15 23.05 0.14 -2.04 16 15 S 0.03 1.39 16.54 -56.49 -0.93 0.45 16 16 C -0.58 -34.70 9.54 67.96 0.65 -34.05 16 17 H 0.08 5.20 5.21 -2.91 -0.02 5.19 16 18 C 0.06 3.31 5.50 84.88 0.47 3.77 16 19 N -0.90 -54.73 13.96 21.65 0.30 -54.43 16 20 Si 0.90 44.62 27.74 68.60 1.90 46.53 16 21 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.25 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 24 C 0.49 9.29 7.48 71.24 0.53 9.82 16 25 O -0.55 -15.77 16.18 26.95 0.44 -15.34 16 26 O -0.50 -5.63 10.57 -51.38 -0.54 -6.17 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.70 5.46 -2.39 -0.01 0.69 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 1.72 7.95 -2.39 -0.02 1.70 16 33 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.16 3.74 7.61 -2.91 -0.02 3.71 16 35 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.12 5.81 5.04 -2.91 -0.01 5.80 16 38 H 0.28 15.62 8.31 -92.70 -0.77 14.85 16 39 H 0.42 1.81 9.10 -74.06 -0.67 1.13 16 Total: -1.00 -79.59 345.08 5.60 -73.98 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.39 Total: 12.25 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 4.23 Total: -22.69 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.30 Total: -54.43 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -0.29 Total: -56.09 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -0.93 Total: 0.45 kcal Total: -79.59 5.60 -73.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595182877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.494 kcal (2) G-P(sol) polarization free energy of solvation -79.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds