Wall clock time and date at job start Tue Mar 31 2020 13:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46991 * 2 1 4 4 H 1.08999 * 109.46936 * 304.99908 * 3 2 1 5 5 C 1.52997 * 109.46665 * 184.99974 * 3 2 1 6 6 O 1.45197 * 109.47390 * 65.00072 * 5 3 2 7 7 C 1.34788 * 116.99882 * 179.97438 * 6 5 3 8 8 O 1.21529 * 120.00082 * 0.02562 * 7 6 5 9 9 C 1.47288 * 119.99770 * 180.02562 * 7 6 5 10 10 C 1.39746 * 120.21907 * 359.95526 * 9 7 6 11 11 C 1.37778 * 119.92698 * 179.97438 * 10 9 7 12 12 C 1.38676 * 120.39387 * 0.02562 * 11 10 9 13 13 C 1.37906 * 120.45004 * 0.02562 * 12 11 10 14 14 C 1.39112 * 120.05655 * 359.95685 * 13 12 11 15 15 S 1.76202 * 120.19325 * 180.02562 * 14 13 12 16 16 C 1.76198 * 99.99791 * 6.84293 * 15 14 13 17 17 H 1.07997 * 120.00559 * 5.64639 * 16 15 14 18 18 C 1.38819 * 119.99599 * 185.65656 * 16 15 14 19 19 N 1.31539 * 120.00132 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99899 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46676 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46975 * 119.99204 * 20 18 16 23 23 H 1.48497 * 109.47206 * 239.99786 * 20 18 16 24 24 C 1.50702 * 109.47124 * 64.99785 * 3 2 1 25 25 O 1.20824 * 119.99756 * 119.99483 * 24 3 2 26 26 O 1.34223 * 119.99927 * 300.00046 * 24 3 2 27 27 H 1.09002 * 109.47172 * 300.00505 * 1 2 3 28 28 H 1.09004 * 109.47015 * 59.99915 * 1 2 3 29 29 H 1.08993 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47134 * 240.00023 * 2 1 3 31 31 H 1.08997 * 109.47051 * 119.99691 * 2 1 3 32 32 H 1.09001 * 109.47142 * 304.99878 * 5 3 2 33 33 H 1.09005 * 109.46987 * 185.00032 * 5 3 2 34 34 H 1.07996 * 120.03470 * 0.02562 * 10 9 7 35 35 H 1.08008 * 119.80125 * 180.30191 * 11 10 9 36 36 H 1.07998 * 119.77107 * 180.02562 * 12 11 10 37 37 H 1.07999 * 119.96858 * 179.97438 * 13 12 11 38 38 H 0.97006 * 120.00182 * 180.02562 * 19 18 16 39 39 H 0.96711 * 116.99812 * 180.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 3.9446 0.9026 -1.4182 7 6 5.2631 0.8347 -1.6898 8 8 6.0731 1.2173 -0.8686 9 6 5.7221 0.2968 -2.9818 10 6 4.7946 -0.1453 -3.9290 11 6 5.2306 -0.6469 -5.1359 12 6 6.5866 -0.7169 -5.4179 13 6 7.5157 -0.2860 -4.4944 14 6 7.0962 0.2241 -3.2700 15 16 8.2802 0.7762 -2.0876 16 6 9.7532 0.6451 -3.0454 17 1 9.6957 0.3831 -4.0916 18 6 10.9879 0.8783 -2.4553 19 7 11.0580 1.1977 -1.1812 20 14 12.5497 0.7387 -3.4706 21 1 12.2014 0.3689 -4.8660 22 1 13.2611 2.0422 -3.4662 23 1 13.4280 -0.3067 -2.8865 24 6 1.6413 2.1163 1.2877 25 8 2.4897 2.5531 2.0288 26 8 0.3437 2.2311 1.6112 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9954 0.8311 0.6659 33 1 3.9356 2.4655 -0.0366 34 1 3.7373 -0.0930 -3.7156 35 1 4.5119 -0.9835 -5.8685 36 1 6.9172 -1.1115 -6.3673 37 1 8.5698 -0.3445 -4.7219 38 1 11.9208 1.3611 -0.7689 39 1 0.1370 2.6713 2.4471 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595182881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:07 Heat of formation + Delta-G solvation = -159.447555 kcal Electronic energy + Delta-G solvation = -24355.685953 eV Core-core repulsion = 20547.452558 eV Total energy + Delta-G solvation = -3808.233395 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80764 -39.87268 -37.94094 -36.57903 -36.26774 -34.87866 -32.83508 -30.95434 -30.36730 -29.75314 -25.90642 -25.42372 -23.45787 -23.16087 -22.00360 -20.69781 -20.39253 -18.43345 -18.17739 -17.47679 -16.96857 -16.40163 -16.07119 -15.76227 -15.71702 -15.16160 -14.43304 -14.18568 -14.11322 -13.82425 -13.76517 -13.46210 -13.31703 -12.99881 -12.66498 -12.37784 -11.98945 -11.89336 -11.65190 -11.37403 -11.26524 -11.25830 -11.17100 -11.09398 -10.97191 -10.65995 -10.38171 -10.31408 -10.16061 -9.81551 -9.58794 -8.80968 -8.43344 -8.26813 -6.65682 -6.54143 -4.26057 1.34961 1.92313 1.98522 2.38020 3.04595 3.08012 3.16745 3.19607 3.29053 3.37922 3.98810 4.31937 4.37282 4.44310 4.76592 4.87888 5.02024 5.05517 5.15985 5.24720 5.33292 5.42772 5.44622 5.57984 5.63185 5.67563 5.79875 5.87676 5.96691 6.10706 6.16723 6.20244 6.29395 6.55393 6.76702 6.82446 7.02850 7.07462 7.38583 7.52966 7.59697 8.09207 8.37426 8.92328 10.49419 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017511 B = 0.003139 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.570866 B = 8917.140129 C =10357.541147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C -0.080 4.080 4 H 0.121 0.879 5 C 0.082 3.918 6 O -0.359 6.359 7 C 0.497 3.503 8 O -0.480 6.480 9 C -0.166 4.166 10 C -0.038 4.038 11 C -0.191 4.191 12 C -0.069 4.069 13 C -0.155 4.155 14 C -0.055 4.055 15 S 0.186 5.814 16 C -0.595 4.595 17 H 0.094 0.906 18 C 0.083 3.917 19 N -0.856 5.856 20 Si 0.922 3.078 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.489 3.511 25 O -0.508 6.508 26 O -0.508 6.508 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.276 0.724 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.848 -1.891 -0.593 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.154 4.154 3 C -0.099 4.099 4 H 0.139 0.861 5 C 0.008 3.992 6 O -0.278 6.278 7 C 0.342 3.658 8 O -0.368 6.368 9 C -0.179 4.179 10 C -0.058 4.058 11 C -0.216 4.216 12 C -0.091 4.091 13 C -0.180 4.180 14 C -0.175 4.175 15 S 0.451 5.549 16 C -0.741 4.741 17 H 0.112 0.888 18 C -0.128 4.128 19 N -0.488 5.488 20 Si 0.747 3.253 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C 0.331 3.669 25 O -0.395 6.395 26 O -0.320 6.320 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -18.930 -1.292 1.087 19.005 hybrid contribution 1.029 -0.126 -1.223 1.603 sum -17.901 -1.417 -0.136 17.958 Atomic orbital electron populations 1.22002 0.94594 1.01984 1.03296 1.21544 0.96891 0.92759 1.04158 1.20981 0.96136 0.98820 0.93956 0.86084 1.22561 0.91713 1.00864 0.84109 1.86424 1.27462 1.77129 1.36763 1.21168 0.79609 0.77090 0.87888 1.90870 1.53408 1.44822 1.47737 1.18256 0.92349 1.13838 0.93462 1.21077 0.98280 0.93951 0.92488 1.20711 0.95508 1.07484 0.97852 1.21155 0.93250 0.96576 0.98129 1.21398 1.00856 1.02326 0.93423 1.23071 0.96928 0.97304 1.00179 1.84722 0.93543 1.65593 1.11009 1.24070 0.94115 1.55690 1.00216 0.88833 1.25133 0.99486 0.93030 0.95159 1.69974 1.26851 1.41227 1.10718 0.86057 0.80862 0.78330 0.80056 1.19052 1.20151 1.20156 1.23109 0.80108 0.76097 0.87633 1.90792 1.51580 1.45460 1.51685 1.84596 1.27940 1.74071 1.45412 0.90733 0.92422 0.92518 0.89068 0.91376 0.90269 0.90150 0.85841 0.86774 0.86794 0.84125 0.91412 0.73323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.55 37.16 0.36 -0.80 16 2 C -0.12 -1.02 5.35 -26.72 -0.14 -1.16 16 3 C -0.08 -0.80 2.57 -91.77 -0.24 -1.04 16 4 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.08 1.15 4.20 37.16 0.16 1.30 16 6 O -0.36 -5.63 8.93 -40.73 -0.36 -5.99 16 7 C 0.50 9.85 7.87 34.41 0.27 10.12 16 8 O -0.48 -11.11 13.57 -19.29 -0.26 -11.38 16 9 C -0.17 -3.29 5.89 -104.77 -0.62 -3.91 16 10 C -0.04 -0.62 9.61 -39.19 -0.38 -1.00 16 11 C -0.19 -2.89 10.02 -39.59 -0.40 -3.29 16 12 C -0.07 -1.13 10.03 -39.54 -0.40 -1.53 16 13 C -0.16 -3.15 9.22 -39.38 -0.36 -3.52 16 14 C -0.06 -1.24 6.15 -38.37 -0.24 -1.47 16 15 S 0.19 4.90 18.56 -107.50 -2.00 2.91 16 16 C -0.59 -16.06 9.00 30.95 0.28 -15.78 16 17 H 0.09 2.39 4.98 -52.49 -0.26 2.13 16 18 C 0.08 2.24 5.49 -17.46 -0.10 2.15 16 19 N -0.86 -24.31 13.22 55.49 0.73 -23.58 16 20 Si 0.92 20.32 29.55 -169.99 -5.02 15.29 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 C 0.49 5.04 7.60 36.01 0.27 5.31 16 25 O -0.51 -7.17 16.68 -18.75 -0.31 -7.48 16 26 O -0.51 -3.47 10.57 -39.24 -0.41 -3.88 16 27 H 0.07 0.53 5.46 -51.93 -0.28 0.25 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.22 7.95 -51.93 -0.41 0.80 16 34 H 0.12 1.64 7.61 -52.49 -0.40 1.24 16 35 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.14 2.96 5.04 -52.49 -0.26 2.70 16 38 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.41 1.20 9.10 45.56 0.41 1.61 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -32.77 347.91 -7.62 -40.39 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.70 Total: 3.08 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.53 Total: -14.61 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.73 Total: -23.58 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.35 Total: -28.73 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -2.00 Total: 2.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.77 -7.62 -40.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595182881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.054 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds