Wall clock time and date at job start Tue Mar 31 2020 14:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35910 * 117.00004 * 2 1 4 4 C 1.38876 * 119.98079 * 359.97438 * 3 2 1 5 5 C 1.38263 * 120.25478 * 179.97438 * 4 3 2 6 6 C 1.37977 * 120.21770 * 0.04923 * 5 4 3 7 7 C 1.39657 * 119.95522 * 359.97339 * 6 5 4 8 8 C 1.47708 * 120.12471 * 179.97438 * 7 6 5 9 9 O 1.21476 * 119.99688 * 130.55649 * 8 7 6 10 10 N 1.34780 * 120.00153 * 310.55573 * 8 7 6 11 11 C 1.33324 * 119.99567 * 3.01702 * 10 8 7 12 12 H 1.08002 * 120.00495 * 312.53320 * 11 10 8 13 13 C 1.46784 * 119.99859 * 132.54182 * 11 10 8 14 14 N 1.29323 * 119.99896 * 350.79988 * 13 11 10 15 15 Si 1.86800 * 120.00170 * 170.80543 * 13 11 10 16 16 H 1.48496 * 109.47260 * 59.99849 * 15 13 11 17 17 H 1.48508 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47118 * 299.99768 * 15 13 11 19 19 C 1.46503 * 119.99849 * 183.01797 * 10 8 7 20 20 C 1.50697 * 109.46755 * 84.49862 * 19 10 8 21 21 O 1.20826 * 120.00417 * 0.02562 * 20 19 10 22 22 O 1.34235 * 120.00092 * 179.97438 * 20 19 10 23 23 C 1.38426 * 119.98288 * 180.02562 * 3 2 1 24 24 N 1.48019 * 120.10302 * 0.27834 * 23 3 2 25 25 O 1.31695 * 120.00156 * 269.71823 * 24 23 3 26 26 O 1.31699 * 120.00028 * 89.72266 * 24 23 3 27 27 H 1.09001 * 109.46789 * 299.99517 * 1 2 3 28 28 H 1.08996 * 109.47659 * 59.99600 * 1 2 3 29 29 H 1.09001 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.87206 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.89189 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.02194 * 179.97438 * 6 5 4 33 33 H 0.97003 * 119.99953 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.46806 * 204.49683 * 19 10 8 35 35 H 1.08994 * 109.47139 * 324.49724 * 19 10 8 36 36 H 0.96699 * 117.00453 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2892 2.3754 -0.0005 5 6 1.9110 3.6103 0.0000 6 6 3.2882 3.6944 0.0000 7 6 4.0580 2.5291 0.0001 8 6 5.5326 2.6147 -0.0004 9 8 6.1788 1.9672 0.7989 10 7 6.1611 3.4111 -0.8877 11 6 5.4505 4.1673 -1.7247 12 1 4.6257 3.7371 -2.2735 13 6 5.7891 5.5847 -1.9007 14 7 6.6547 6.1444 -1.1197 15 14 4.9698 6.5800 -3.2525 16 1 3.4999 6.5859 -3.0413 17 1 5.4798 7.9743 -3.2191 18 1 5.2779 5.9712 -4.5715 19 6 7.6250 3.4458 -0.9322 20 6 8.1282 2.3155 -1.7926 21 8 7.3445 1.5589 -2.3154 22 8 9.4472 2.1497 -1.9791 23 6 3.4284 1.2830 -0.0005 24 7 4.2364 0.0428 -0.0073 25 8 4.6013 -0.5116 1.1301 26 8 4.5905 -0.5061 -1.1509 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2109 2.3161 -0.0005 31 1 1.3168 4.5122 0.0000 32 1 3.7706 4.6606 0.0000 33 1 6.8788 7.0810 -1.2362 34 1 7.9533 4.3963 -1.3526 35 1 8.0219 3.3385 0.0772 36 1 9.7220 1.4110 -2.5393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599640356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:58 Heat of formation + Delta-G solvation = -86.058618 kcal Electronic energy + Delta-G solvation = -28563.284556 eV Core-core repulsion = 24211.940330 eV Total energy + Delta-G solvation = -4351.344226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.71206 -39.71616 -38.76998 -37.91791 -36.98837 -35.49455 -34.97722 -33.63140 -32.29111 -31.68000 -30.68362 -28.04062 -27.66054 -26.13255 -24.85613 -23.13557 -22.06560 -21.16927 -19.82067 -18.81933 -17.75086 -17.53701 -17.41053 -17.11317 -16.67315 -16.28122 -15.96645 -15.50249 -15.04388 -14.94610 -14.80099 -14.71443 -14.59569 -13.84568 -13.39608 -13.23803 -12.80498 -12.56659 -12.29369 -11.96097 -11.79852 -11.64087 -11.55931 -11.31803 -11.27194 -11.09727 -10.74051 -10.72511 -10.67111 -10.41919 -9.92924 -9.82018 -9.53798 -9.28294 -9.03262 -8.42109 -8.00209 -6.86651 -4.41920 0.46520 0.78513 1.19546 1.70146 2.80833 2.88109 2.97267 3.00365 3.05302 3.19514 3.49696 3.76359 3.99631 4.26244 4.57609 4.60352 4.70792 4.92173 4.92939 5.17320 5.23675 5.25501 5.27727 5.67674 5.88917 6.07920 6.12982 6.15787 6.38198 6.43055 6.50910 6.59377 6.90440 7.03472 7.16432 7.32225 7.44820 8.00957 8.47799 8.64703 8.99004 9.55996 10.11878 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.006278 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.627366 B = 4459.172297 C = 6090.825562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.156 3.844 4 C -0.196 4.196 5 C -0.063 4.063 6 C -0.079 4.079 7 C 0.005 3.995 8 C 0.498 3.502 9 O -0.573 6.573 10 N -0.381 5.381 11 C -0.392 4.392 12 H 0.093 0.907 13 C 0.060 3.940 14 N -0.824 5.824 15 Si 0.921 3.079 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.266 1.266 19 C 0.122 3.878 20 C 0.456 3.544 21 O -0.503 6.503 22 O -0.527 6.527 23 C 0.004 3.996 24 N -0.015 5.015 25 O -0.127 6.127 26 O -0.148 6.148 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.166 0.834 33 H 0.286 0.714 34 H 0.139 0.861 35 H 0.103 0.897 36 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 0.697 -0.013 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.109 3.891 4 C -0.215 4.215 5 C -0.082 4.082 6 C -0.099 4.099 7 C 0.001 3.999 8 C 0.287 3.713 9 O -0.457 6.457 10 N -0.096 5.096 11 C -0.520 4.520 12 H 0.110 0.890 13 C -0.156 4.156 14 N -0.454 5.454 15 Si 0.746 3.254 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.190 1.190 19 C -0.002 4.002 20 C 0.297 3.703 21 O -0.389 6.389 22 O -0.338 6.338 23 C -0.080 4.080 24 N 0.483 4.517 25 O -0.337 6.337 26 O -0.351 6.351 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.121 0.879 36 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.919 1.161 0.486 9.999 hybrid contribution -0.115 -0.186 -1.248 1.267 sum -10.034 0.975 -0.763 10.110 Atomic orbital electron populations 1.23158 0.77141 1.04564 1.01767 1.86153 1.22575 1.25678 1.88392 1.18158 0.88262 0.86153 0.96479 1.21195 1.00189 0.90993 1.09161 1.21222 0.94670 0.97271 0.94988 1.21539 0.92585 0.98643 0.97085 1.19645 0.96110 0.89560 0.94607 1.18189 0.85784 0.84903 0.82412 1.90756 1.66112 1.48613 1.40231 1.41570 1.02793 1.36198 1.29063 1.20147 1.17565 0.88842 1.25488 0.88971 1.27187 0.95306 0.96679 0.96434 1.68813 1.28692 1.13848 1.34030 0.86081 0.80185 0.77980 0.81171 1.18780 1.20388 1.19048 1.21090 0.84017 0.95928 0.99206 1.24846 0.79404 0.86147 0.79898 1.90707 1.56655 1.44549 1.47010 1.84574 1.27505 1.53882 1.67840 1.19404 0.87127 0.83072 1.18378 1.49918 0.98012 1.01458 1.02309 1.96220 1.57104 1.64576 1.15805 1.96273 1.58638 1.65483 1.14673 0.92049 0.92026 0.87731 0.83673 0.83859 0.81649 0.90210 0.84381 0.87946 0.74566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -5.04 10.25 -19.46 -0.20 -5.24 16 3 C 0.16 2.71 6.68 -39.28 -0.26 2.45 16 4 C -0.20 -2.57 9.04 -39.34 -0.36 -2.93 16 5 C -0.06 -0.85 10.02 -39.67 -0.40 -1.25 16 6 C -0.08 -1.41 8.21 -39.15 -0.32 -1.73 16 7 C 0.01 0.11 5.04 -104.99 -0.53 -0.42 16 8 C 0.50 12.72 6.68 -12.39 -0.08 12.64 16 9 O -0.57 -16.08 15.80 5.38 0.09 -16.00 16 10 N -0.38 -9.41 1.95 -115.66 -0.23 -9.64 16 11 C -0.39 -9.26 6.71 -13.45 -0.09 -9.35 16 12 H 0.09 2.23 7.39 -52.49 -0.39 1.84 16 13 C 0.06 1.32 5.27 -15.15 -0.08 1.24 16 14 N -0.82 -18.42 11.65 56.00 0.65 -17.77 16 15 Si 0.92 17.02 29.65 -169.99 -5.04 11.98 16 16 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 17 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 19 C 0.12 2.83 5.47 -5.19 -0.03 2.80 16 20 C 0.46 10.36 8.36 36.00 0.30 10.66 16 21 O -0.50 -13.13 17.06 -18.75 -0.32 -13.45 16 22 O -0.53 -9.49 13.42 -39.27 -0.53 -10.02 16 23 C 0.00 0.09 6.27 -79.36 -0.50 -0.41 16 24 N -0.02 -0.37 3.60 34.25 0.12 -0.25 16 25 O -0.13 -3.20 19.65 -32.38 -0.64 -3.84 16 26 O -0.15 -3.84 19.97 -31.57 -0.63 -4.47 16 27 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.15 1.29 6.28 -52.49 -0.33 0.96 16 31 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.17 2.99 7.04 -52.49 -0.37 2.62 16 33 H 0.29 5.91 8.26 -40.82 -0.34 5.57 16 34 H 0.14 3.14 5.94 -51.93 -0.31 2.83 16 35 H 0.10 2.35 7.55 -51.93 -0.39 1.96 16 36 H 0.40 5.27 9.10 45.56 0.41 5.68 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -34.25 334.97 -5.17 -39.42 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -2.15 Total: 9.25 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -1.35 Total: 14.96 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.55 Total: -27.65 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -2.23 Total: -53.01 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.04 Total: 11.98 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.25 -5.17 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599640356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.634 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds