Wall clock time and date at job start Tue Mar 31 2020 14:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35910 * 117.00004 * 2 1 4 4 C 1.38876 * 119.98079 * 359.97438 * 3 2 1 5 5 C 1.38263 * 120.25478 * 179.97438 * 4 3 2 6 6 C 1.37977 * 120.21770 * 0.04923 * 5 4 3 7 7 C 1.39657 * 119.95522 * 359.97339 * 6 5 4 8 8 C 1.47708 * 120.12471 * 179.97438 * 7 6 5 9 9 O 1.21476 * 119.99688 * 130.55649 * 8 7 6 10 10 N 1.34780 * 120.00153 * 310.55573 * 8 7 6 11 11 C 1.33324 * 119.99567 * 3.01702 * 10 8 7 12 12 H 1.08002 * 120.00495 * 312.53320 * 11 10 8 13 13 C 1.46784 * 119.99859 * 132.54182 * 11 10 8 14 14 N 1.29323 * 119.99896 * 350.79988 * 13 11 10 15 15 Si 1.86800 * 120.00170 * 170.80543 * 13 11 10 16 16 H 1.48496 * 109.47260 * 59.99849 * 15 13 11 17 17 H 1.48508 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47118 * 299.99768 * 15 13 11 19 19 C 1.46503 * 119.99849 * 183.01797 * 10 8 7 20 20 C 1.50697 * 109.46755 * 84.49862 * 19 10 8 21 21 O 1.20826 * 120.00417 * 0.02562 * 20 19 10 22 22 O 1.34235 * 120.00092 * 179.97438 * 20 19 10 23 23 C 1.38426 * 119.98288 * 180.02562 * 3 2 1 24 24 N 1.48019 * 120.10302 * 0.27834 * 23 3 2 25 25 O 1.31695 * 120.00156 * 269.71823 * 24 23 3 26 26 O 1.31699 * 120.00028 * 89.72266 * 24 23 3 27 27 H 1.09001 * 109.46789 * 299.99517 * 1 2 3 28 28 H 1.08996 * 109.47659 * 59.99600 * 1 2 3 29 29 H 1.09001 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.87206 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.89189 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.02194 * 179.97438 * 6 5 4 33 33 H 0.97003 * 119.99953 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.46806 * 204.49683 * 19 10 8 35 35 H 1.08994 * 109.47139 * 324.49724 * 19 10 8 36 36 H 0.96699 * 117.00453 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2892 2.3754 -0.0005 5 6 1.9110 3.6103 0.0000 6 6 3.2882 3.6944 0.0000 7 6 4.0580 2.5291 0.0001 8 6 5.5326 2.6147 -0.0004 9 8 6.1788 1.9672 0.7989 10 7 6.1611 3.4111 -0.8877 11 6 5.4505 4.1673 -1.7247 12 1 4.6257 3.7371 -2.2735 13 6 5.7891 5.5847 -1.9007 14 7 6.6547 6.1444 -1.1197 15 14 4.9698 6.5800 -3.2525 16 1 3.4999 6.5859 -3.0413 17 1 5.4798 7.9743 -3.2191 18 1 5.2779 5.9712 -4.5715 19 6 7.6250 3.4458 -0.9322 20 6 8.1282 2.3155 -1.7926 21 8 7.3445 1.5589 -2.3154 22 8 9.4472 2.1497 -1.9791 23 6 3.4284 1.2830 -0.0005 24 7 4.2364 0.0428 -0.0073 25 8 4.6013 -0.5116 1.1301 26 8 4.5905 -0.5061 -1.1509 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2109 2.3161 -0.0005 31 1 1.3168 4.5122 0.0000 32 1 3.7706 4.6606 0.0000 33 1 6.8788 7.0810 -1.2362 34 1 7.9533 4.3963 -1.3526 35 1 8.0219 3.3385 0.0772 36 1 9.7220 1.4110 -2.5393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599640356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:58 Heat of formation + Delta-G solvation = -111.147427 kcal Electronic energy + Delta-G solvation = -28564.372489 eV Core-core repulsion = 24211.940330 eV Total energy + Delta-G solvation = -4352.432159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14426 -41.41051 -40.37983 -39.72033 -38.35963 -37.27654 -36.80992 -35.56351 -34.06687 -33.08998 -32.06860 -29.75897 -28.56620 -27.78067 -26.60360 -24.63554 -23.47299 -22.82796 -21.50782 -20.35991 -19.41707 -19.28193 -19.19251 -18.68035 -18.07602 -17.92577 -17.28907 -16.99137 -16.71812 -16.59510 -16.37106 -16.14494 -16.04932 -15.50818 -14.95279 -14.67197 -14.18269 -13.81175 -13.77718 -13.49504 -13.41919 -13.13662 -12.97224 -12.74920 -12.69621 -12.66363 -12.51998 -12.23959 -12.20137 -12.09510 -11.92426 -11.70950 -11.30438 -10.87323 -10.55960 -9.86196 -9.66504 -8.56293 -6.22029 -1.46928 -0.58917 -0.08779 0.02510 1.19936 1.34502 1.45437 1.51792 1.56518 1.83429 2.02624 2.27761 2.39290 2.66080 2.88390 3.44878 3.54754 3.68545 3.87615 4.04731 4.18572 4.27051 4.30933 4.34182 4.41106 4.57756 4.63096 4.65821 4.74695 5.07735 5.13717 5.17211 5.36111 5.38291 5.53851 5.63448 5.94795 6.22786 6.71535 6.95926 7.15700 7.77629 8.43934 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.006278 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.627366 B = 4459.172297 C = 6090.825562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.344 6.344 3 C 0.159 3.841 4 C -0.166 4.166 5 C -0.032 4.032 6 C -0.084 4.084 7 C -0.034 4.034 8 C 0.477 3.523 9 O -0.622 6.622 10 N -0.383 5.383 11 C -0.415 4.415 12 H 0.082 0.918 13 C 0.039 3.961 14 N -0.843 5.843 15 Si 0.984 3.016 16 H -0.242 1.242 17 H -0.269 1.269 18 H -0.279 1.279 19 C 0.118 3.882 20 C 0.463 3.537 21 O -0.543 6.543 22 O -0.508 6.508 23 C -0.043 4.043 24 N -0.008 5.008 25 O -0.140 6.140 26 O -0.193 6.193 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.205 0.795 31 H 0.202 0.798 32 H 0.158 0.842 33 H 0.295 0.705 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.462 3.119 -0.698 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.258 6.258 3 C 0.112 3.888 4 C -0.185 4.185 5 C -0.050 4.050 6 C -0.104 4.104 7 C -0.038 4.038 8 C 0.268 3.732 9 O -0.510 6.510 10 N -0.097 5.097 11 C -0.543 4.543 12 H 0.099 0.901 13 C -0.176 4.176 14 N -0.473 5.473 15 Si 0.805 3.195 16 H -0.165 1.165 17 H -0.194 1.194 18 H -0.205 1.205 19 C -0.007 4.007 20 C 0.305 3.695 21 O -0.432 6.432 22 O -0.321 6.321 23 C -0.126 4.126 24 N 0.488 4.512 25 O -0.354 6.354 26 O -0.389 6.389 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.139 0.861 30 H 0.222 0.778 31 H 0.219 0.781 32 H 0.176 0.824 33 H 0.107 0.893 34 H 0.160 0.840 35 H 0.114 0.886 36 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -13.658 3.582 -0.255 14.122 hybrid contribution 0.998 -0.912 -0.989 1.675 sum -12.660 2.670 -1.243 12.998 Atomic orbital electron populations 1.23679 0.73535 1.06698 1.04169 1.86148 1.26262 1.25475 1.87939 1.18464 0.86667 0.88251 0.95442 1.21888 1.02523 0.88857 1.05186 1.21847 0.92708 0.99653 0.90754 1.21608 0.94567 0.96618 0.97578 1.19531 0.94395 0.91191 0.98653 1.18907 0.87714 0.84720 0.81905 1.90677 1.67710 1.50533 1.42113 1.41753 1.03195 1.36105 1.28623 1.20197 1.18294 0.89800 1.25990 0.90054 1.27858 0.95360 0.96531 0.97882 1.68847 1.28933 1.14625 1.34856 0.85154 0.80513 0.76504 0.77359 1.16492 1.19364 1.20454 1.21107 0.84192 0.96345 0.99019 1.24679 0.80342 0.85379 0.79068 1.90697 1.58008 1.45863 1.48681 1.84494 1.24719 1.54906 1.67975 1.19925 0.88729 0.81196 1.22757 1.50395 0.97177 1.02213 1.01441 1.96170 1.57518 1.65609 1.16103 1.96241 1.60507 1.67124 1.15076 0.89344 0.89610 0.86147 0.77781 0.78086 0.82415 0.89274 0.84032 0.88614 0.71737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -10.39 10.25 -92.53 -0.95 -11.34 16 3 C 0.16 5.23 6.68 22.47 0.15 5.38 16 4 C -0.17 -3.47 9.04 22.43 0.20 -3.26 16 5 C -0.03 -0.70 10.02 22.21 0.22 -0.48 16 6 C -0.08 -2.90 8.21 22.55 0.19 -2.71 16 7 C -0.03 -1.53 5.04 -20.10 -0.10 -1.63 16 8 C 0.48 25.85 6.68 86.75 0.58 26.43 16 9 O -0.62 -37.62 15.80 -3.64 -0.06 -37.67 16 10 N -0.38 -19.85 1.95 -638.15 -1.25 -21.09 16 11 C -0.41 -20.06 6.71 86.70 0.58 -19.48 16 12 H 0.08 4.04 7.39 -2.91 -0.02 4.02 16 13 C 0.04 1.68 5.27 87.30 0.46 2.14 16 14 N -0.84 -37.44 11.65 23.26 0.27 -37.17 16 15 Si 0.98 33.28 29.65 68.60 2.03 35.31 16 16 H -0.24 -7.34 7.11 99.48 0.71 -6.63 16 17 H -0.27 -8.65 7.11 99.48 0.71 -7.94 16 18 H -0.28 -10.05 7.11 99.48 0.71 -9.35 16 19 C 0.12 5.74 5.47 85.63 0.47 6.21 16 20 C 0.46 21.92 8.36 71.24 0.60 22.51 16 21 O -0.54 -29.82 17.06 21.96 0.37 -29.45 16 22 O -0.51 -18.44 13.42 -51.46 -0.69 -19.14 16 23 C -0.04 -1.94 6.27 36.75 0.23 -1.71 16 24 N -0.01 -0.41 3.60 -45.57 -0.16 -0.57 16 25 O -0.14 -7.54 19.65 4.30 0.08 -7.46 16 26 O -0.19 -10.76 19.97 3.52 0.07 -10.69 16 27 H 0.09 0.82 7.66 -2.39 -0.02 0.80 16 28 H 0.09 0.84 7.66 -2.39 -0.02 0.82 16 29 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.21 1.89 6.28 -2.91 -0.02 1.87 16 31 H 0.20 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.16 5.59 7.04 -2.91 -0.02 5.57 16 33 H 0.30 11.89 8.26 -92.71 -0.77 11.12 16 34 H 0.14 6.67 5.94 -2.39 -0.01 6.65 16 35 H 0.10 4.71 7.55 -2.39 -0.02 4.69 16 36 H 0.42 11.00 9.10 -74.06 -0.67 10.33 16 Total: -1.00 -84.09 334.97 4.92 -79.17 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.51 Total: 25.41 kcal Atomic # 6 Polarization: 29.99 SS G_CDS: 4.69 Total: 34.68 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -1.14 Total: -58.83 kcal Atomic # 8 Polarization: -114.57 SS G_CDS: -1.17 Total: -115.74 kcal Atomic # 14 Polarization: 33.28 SS G_CDS: 2.03 Total: 35.31 kcal Total: -84.09 4.92 -79.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599640356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.976 kcal (2) G-P(sol) polarization free energy of solvation -84.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds