Wall clock time and date at job start Tue Mar 31 2020 14:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99923 * 2 1 4 4 H 1.48500 * 109.46856 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47336 * 119.99719 * 3 2 1 6 6 H 1.48500 * 109.47109 * 239.99958 * 3 2 1 7 7 C 1.37876 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99576 * 14.87579 * 7 2 1 9 9 C 1.50696 * 120.00411 * 194.87022 * 7 2 1 10 10 O 1.42903 * 112.94321 * 65.74904 * 9 7 2 11 11 C 1.53946 * 113.74356 * 294.16088 * 9 7 2 12 12 N 1.47811 * 86.03718 * 222.07926 * 11 9 7 13 13 C 1.34777 * 134.45809 * 204.64018 * 12 11 9 14 14 O 1.21579 * 120.00103 * 179.87422 * 13 12 11 15 15 N 1.34779 * 119.99606 * 359.86687 * 13 12 11 16 16 C 1.39526 * 119.99440 * 184.58810 * 15 13 12 17 17 C 1.39085 * 119.92809 * 329.33502 * 16 15 13 18 18 C 1.37670 * 120.10524 * 179.97438 * 17 16 15 19 19 C 1.39803 * 119.95950 * 0.02562 * 18 17 16 20 20 C 1.47452 * 120.06801 * 179.97438 * 19 18 17 21 21 O 1.21507 * 119.99861 * 0.02562 * 20 19 18 22 22 O 1.34755 * 119.99583 * 179.97438 * 20 19 18 23 23 C 1.39819 * 119.85953 * 0.02562 * 19 18 17 24 24 C 1.37838 * 119.88610 * 359.70244 * 23 19 18 25 25 F 1.35106 * 119.97884 * 180.29730 * 24 23 19 26 26 C 1.47583 * 91.04785 * 24.55153 * 12 11 9 27 27 H 0.97000 * 119.99723 * 174.92226 * 1 2 3 28 28 H 0.96693 * 114.00131 * 305.96661 * 10 9 7 29 29 H 1.09006 * 113.76776 * 336.34917 * 11 9 7 30 30 H 1.09004 * 113.77057 * 107.74044 * 11 9 7 31 31 H 0.96998 * 120.00161 * 4.59631 * 15 13 12 32 32 H 1.07999 * 119.94941 * 359.97438 * 17 16 15 33 33 H 1.08001 * 120.01738 * 180.02562 * 18 17 16 34 34 H 0.96697 * 116.99931 * 180.02562 * 22 20 19 35 35 H 1.07997 * 120.05141 * 179.97438 * 23 19 18 36 36 H 1.09008 * 113.76320 * 221.15183 * 26 12 11 37 37 H 1.08993 * 113.77394 * 89.75697 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4917 -2.1137 -0.2392 9 6 3.4737 -1.2157 0.3354 10 8 3.7423 -0.8412 1.6881 11 6 4.3553 -0.4882 -0.6958 12 7 5.2897 -1.6236 -0.5454 13 6 6.6142 -1.7874 -0.7333 14 8 7.1292 -2.8682 -0.5217 15 7 7.3678 -0.7530 -1.1560 16 6 8.7196 -0.9460 -1.4424 17 6 9.4451 -1.9094 -0.7495 18 6 10.7790 -2.1033 -1.0295 19 6 11.4058 -1.3304 -2.0115 20 6 12.8345 -1.5356 -2.3129 21 8 13.4681 -2.3776 -1.7080 22 8 13.4370 -0.7901 -3.2601 23 6 10.6752 -0.3616 -2.7063 24 6 9.3386 -0.1764 -2.4249 25 9 8.6295 0.7550 -3.0994 26 6 4.1908 -2.5048 -0.1048 27 1 -0.4850 -0.8368 -0.0744 28 1 3.3641 0.0116 1.9426 29 1 3.9056 -0.4174 -1.6862 30 1 4.7551 0.4614 -0.3400 31 1 6.9704 0.1256 -1.2609 32 1 8.9612 -2.5064 0.0094 33 1 11.3408 -2.8521 -0.4909 34 1 14.3747 -0.9612 -3.4227 35 1 11.1564 0.2375 -3.4651 36 1 4.4596 -3.1623 0.7220 37 1 3.6928 -3.0277 -0.9212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:09 Heat of formation + Delta-G solvation = -131.671461 kcal Electronic energy + Delta-G solvation = -26780.345634 eV Core-core repulsion = 22439.396275 eV Total energy + Delta-G solvation = -4340.949358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.14024 -40.90374 -40.39556 -39.10495 -37.79021 -36.39614 -34.88003 -34.40315 -32.72932 -31.14371 -30.53394 -28.59464 -26.04729 -25.30508 -24.27714 -23.44346 -21.59598 -20.63132 -19.52316 -18.78813 -18.22193 -18.07956 -17.76923 -17.43717 -16.46137 -16.21222 -16.01557 -15.85145 -15.72045 -15.42536 -15.11058 -14.39978 -14.27699 -13.84834 -13.73188 -13.62157 -13.18576 -12.99468 -12.67093 -12.60949 -12.36000 -12.16961 -12.03907 -11.86631 -11.37574 -11.01932 -10.92422 -10.74746 -10.53535 -10.20624 -9.83481 -9.59255 -9.20553 -9.14341 -8.71336 -8.48231 -8.10844 -6.83165 -4.57241 0.25375 0.88548 2.13770 2.39170 2.67143 2.98985 3.07046 3.12521 3.25344 3.45047 3.75706 3.86491 4.08693 4.35148 4.65996 4.72003 4.75745 4.98845 5.05251 5.23461 5.32605 5.38500 5.65168 5.73739 5.74453 5.86492 5.98134 6.02662 6.10335 6.11980 6.15668 6.18108 6.55358 6.62349 7.06389 7.42975 7.55228 7.98868 8.09637 8.47206 8.52574 8.58686 9.18656 10.53584 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.002871 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.423310 B = 9751.395820 C =10424.076743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 1.040 2.960 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.618 4.618 8 H 0.072 0.928 9 C 0.203 3.797 10 O -0.565 6.565 11 C 0.053 3.947 12 N -0.644 5.644 13 C 0.724 3.276 14 O -0.580 6.580 15 N -0.681 5.681 16 C 0.193 3.807 17 C -0.119 4.119 18 C -0.036 4.036 19 C -0.138 4.138 20 C 0.534 3.466 21 O -0.514 6.514 22 O -0.513 6.513 23 C -0.071 4.071 24 C 0.045 3.955 25 F -0.133 7.133 26 C 0.152 3.848 27 H 0.275 0.725 28 H 0.368 0.632 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.413 0.587 32 H 0.170 0.830 33 H 0.148 0.852 34 H 0.415 0.585 35 H 0.153 0.847 36 H 0.077 0.923 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.862 2.700 -5.606 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.173 4.173 3 Si 0.867 3.133 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.656 4.656 8 H 0.090 0.910 9 C 0.161 3.839 10 O -0.373 6.373 11 C -0.070 4.070 12 N -0.380 5.380 13 C 0.428 3.572 14 O -0.459 6.459 15 N -0.326 5.326 16 C 0.093 3.907 17 C -0.140 4.140 18 C -0.055 4.055 19 C -0.140 4.140 20 C 0.379 3.621 21 O -0.403 6.403 22 O -0.325 6.325 23 C -0.091 4.091 24 C 0.023 3.977 25 F -0.111 7.111 26 C 0.030 3.970 27 H 0.086 0.914 28 H 0.217 0.783 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.249 0.751 32 H 0.188 0.812 33 H 0.165 0.835 34 H 0.273 0.727 35 H 0.171 0.829 36 H 0.096 0.904 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.096 2.818 -5.188 20.946 hybrid contribution 0.149 -0.492 -0.599 0.789 sum 20.246 2.326 -5.787 21.185 Atomic orbital electron populations 1.70801 1.06812 1.31587 1.42319 1.25837 0.96369 1.02387 0.92668 0.84143 0.75566 0.76357 0.77205 1.20245 1.20641 1.19976 1.22158 0.92550 0.96927 1.53996 0.91026 1.20362 0.93474 0.90305 0.79726 1.86377 1.79374 1.42183 1.29369 1.24824 0.88764 0.90205 1.03203 1.49406 1.03104 1.17265 1.68214 1.15407 0.80700 0.83009 0.78062 1.90844 1.71237 1.25252 1.58541 1.42544 1.07358 1.13298 1.69417 1.17914 0.83544 0.96409 0.92854 1.21502 0.92631 0.98843 1.00993 1.21257 0.93818 0.96471 0.93974 1.18726 0.90432 1.02110 1.02764 1.20651 0.87760 0.77557 0.76168 1.90910 1.66013 1.33517 1.49874 1.84566 1.31563 1.61281 1.55096 1.21147 0.91363 0.97273 0.99284 1.17215 0.90829 0.94428 0.95256 1.91518 1.78142 1.63025 1.78442 1.23219 0.80967 0.94851 0.97981 0.91414 0.78252 0.88408 0.91761 0.75092 0.81245 0.83475 0.72672 0.82920 0.90437 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.09 13.70 55.43 0.76 -23.33 16 2 C 0.04 0.90 5.44 -17.82 -0.10 0.80 16 3 Si 1.04 20.91 24.52 -169.99 -4.17 16.74 16 4 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.05 5.85 56.52 0.33 -4.72 16 6 H -0.27 -4.96 6.49 56.52 0.37 -4.59 16 7 C -0.62 -15.13 9.04 -34.44 -0.31 -15.44 16 8 H 0.07 1.89 8.06 -52.49 -0.42 1.47 16 9 C 0.20 4.30 1.07 -90.85 -0.10 4.20 16 10 O -0.56 -12.23 13.47 -35.23 -0.47 -12.70 16 11 C 0.05 0.97 5.22 -2.84 -0.01 0.96 16 12 N -0.64 -11.97 3.61 -183.86 -0.66 -12.63 16 13 C 0.72 13.05 8.62 -86.92 -0.75 12.30 16 14 O -0.58 -11.58 14.21 5.30 0.08 -11.51 16 15 N -0.68 -10.05 5.24 -14.17 -0.07 -10.12 16 16 C 0.19 2.60 6.38 -83.64 -0.53 2.07 16 17 C -0.12 -1.57 8.70 -39.47 -0.34 -1.91 16 18 C -0.04 -0.41 9.58 -39.20 -0.38 -0.79 16 19 C -0.14 -1.47 5.87 -104.97 -0.62 -2.08 16 20 C 0.53 5.41 8.26 34.48 0.28 5.69 16 21 O -0.51 -6.54 17.12 -19.27 -0.33 -6.87 16 22 O -0.51 -3.55 12.67 -40.64 -0.51 -4.06 16 23 C -0.07 -0.72 9.58 -39.14 -0.38 -1.09 16 24 C 0.05 0.54 7.29 -39.33 -0.29 0.25 16 25 F -0.13 -1.61 16.88 2.25 0.04 -1.57 16 26 C 0.15 2.97 8.23 -2.97 -0.02 2.94 16 27 H 0.28 7.52 8.73 -40.82 -0.36 7.16 16 28 H 0.37 7.37 6.14 45.56 0.28 7.65 16 29 H 0.10 1.77 7.93 -51.93 -0.41 1.35 16 30 H 0.06 1.07 6.88 -51.93 -0.36 0.72 16 31 H 0.41 5.40 8.18 -40.82 -0.33 5.07 16 32 H 0.17 2.51 5.86 -52.49 -0.31 2.21 16 33 H 0.15 1.52 7.64 -52.49 -0.40 1.12 16 34 H 0.41 0.99 9.11 45.56 0.42 1.40 16 35 H 0.15 1.23 7.60 -52.49 -0.40 0.83 16 36 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 37 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -30.54 326.51 -6.01 -36.56 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -2.04 Total: 16.68 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -3.54 Total: 7.89 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.02 Total: -46.08 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.24 Total: -35.13 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.17 Total: 16.74 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.54 -6.01 -36.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.114 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds