Wall clock time and date at job start Tue Mar 31 2020 14:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99923 * 2 1 4 4 H 1.48500 * 109.46856 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47336 * 119.99719 * 3 2 1 6 6 H 1.48500 * 109.47109 * 239.99958 * 3 2 1 7 7 C 1.37876 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99576 * 14.87579 * 7 2 1 9 9 C 1.50696 * 120.00411 * 194.87022 * 7 2 1 10 10 O 1.42903 * 112.94321 * 65.74904 * 9 7 2 11 11 C 1.53946 * 113.74356 * 294.16088 * 9 7 2 12 12 N 1.47811 * 86.03718 * 222.07926 * 11 9 7 13 13 C 1.34777 * 134.45809 * 204.64018 * 12 11 9 14 14 O 1.21579 * 120.00103 * 179.87422 * 13 12 11 15 15 N 1.34779 * 119.99606 * 359.86687 * 13 12 11 16 16 C 1.39526 * 119.99440 * 184.58810 * 15 13 12 17 17 C 1.39085 * 119.92809 * 329.33502 * 16 15 13 18 18 C 1.37670 * 120.10524 * 179.97438 * 17 16 15 19 19 C 1.39803 * 119.95950 * 0.02562 * 18 17 16 20 20 C 1.47452 * 120.06801 * 179.97438 * 19 18 17 21 21 O 1.21507 * 119.99861 * 0.02562 * 20 19 18 22 22 O 1.34755 * 119.99583 * 179.97438 * 20 19 18 23 23 C 1.39819 * 119.85953 * 0.02562 * 19 18 17 24 24 C 1.37838 * 119.88610 * 359.70244 * 23 19 18 25 25 F 1.35106 * 119.97884 * 180.29730 * 24 23 19 26 26 C 1.47583 * 91.04785 * 24.55153 * 12 11 9 27 27 H 0.97000 * 119.99723 * 174.92226 * 1 2 3 28 28 H 0.96693 * 114.00131 * 305.96661 * 10 9 7 29 29 H 1.09006 * 113.76776 * 336.34917 * 11 9 7 30 30 H 1.09004 * 113.77057 * 107.74044 * 11 9 7 31 31 H 0.96998 * 120.00161 * 4.59631 * 15 13 12 32 32 H 1.07999 * 119.94941 * 359.97438 * 17 16 15 33 33 H 1.08001 * 120.01738 * 180.02562 * 18 17 16 34 34 H 0.96697 * 116.99931 * 180.02562 * 22 20 19 35 35 H 1.07997 * 120.05141 * 179.97438 * 23 19 18 36 36 H 1.09008 * 113.76320 * 221.15183 * 26 12 11 37 37 H 1.08993 * 113.77394 * 89.75697 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4917 -2.1137 -0.2392 9 6 3.4737 -1.2157 0.3354 10 8 3.7423 -0.8412 1.6881 11 6 4.3553 -0.4882 -0.6958 12 7 5.2897 -1.6236 -0.5454 13 6 6.6142 -1.7874 -0.7333 14 8 7.1292 -2.8682 -0.5217 15 7 7.3678 -0.7530 -1.1560 16 6 8.7196 -0.9460 -1.4424 17 6 9.4451 -1.9094 -0.7495 18 6 10.7790 -2.1033 -1.0295 19 6 11.4058 -1.3304 -2.0115 20 6 12.8345 -1.5356 -2.3129 21 8 13.4681 -2.3776 -1.7080 22 8 13.4370 -0.7901 -3.2601 23 6 10.6752 -0.3616 -2.7063 24 6 9.3386 -0.1764 -2.4249 25 9 8.6295 0.7550 -3.0994 26 6 4.1908 -2.5048 -0.1048 27 1 -0.4850 -0.8368 -0.0744 28 1 3.3641 0.0116 1.9426 29 1 3.9056 -0.4174 -1.6862 30 1 4.7551 0.4614 -0.3400 31 1 6.9704 0.1256 -1.2609 32 1 8.9612 -2.5064 0.0094 33 1 11.3408 -2.8521 -0.4909 34 1 14.3747 -0.9612 -3.4227 35 1 11.1564 0.2375 -3.4651 36 1 4.4596 -3.1623 0.7220 37 1 3.6928 -3.0277 -0.9212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:08 Heat of formation + Delta-G solvation = -156.108976 kcal Electronic energy + Delta-G solvation = -26781.405324 eV Core-core repulsion = 22439.396275 eV Total energy + Delta-G solvation = -4342.009048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.05586 -42.07813 -41.36900 -40.36830 -38.99459 -37.10644 -36.07332 -36.04909 -34.64718 -32.12542 -31.59500 -30.03543 -27.54582 -26.87003 -25.42619 -24.37299 -22.54686 -22.00146 -20.97681 -20.00675 -19.75711 -19.07024 -18.84961 -18.58166 -17.51395 -17.36214 -17.18230 -16.90254 -16.79150 -16.53193 -16.46692 -15.97839 -15.31387 -15.19564 -14.93105 -14.65006 -14.58532 -14.36977 -14.06631 -13.88169 -13.61600 -13.46894 -12.95267 -12.93445 -12.60021 -12.47802 -12.16322 -11.91257 -11.89119 -11.72428 -11.39362 -11.19494 -10.92088 -10.40220 -10.09689 -9.89590 -9.34649 -8.82497 -6.58831 -0.65289 -0.00188 1.07988 1.28745 1.42364 1.50560 1.67986 1.86826 1.98432 2.43360 2.47767 2.50135 2.90636 2.91952 3.36165 3.48431 3.71306 3.77061 3.91988 4.09767 4.25183 4.29659 4.35989 4.44130 4.53251 4.57069 4.64194 4.85630 4.91866 4.96830 5.07620 5.19233 5.54391 5.60779 5.62529 5.83971 5.92545 6.41169 6.70356 6.94457 6.94573 7.16699 7.27846 8.52901 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.002871 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.423310 B = 9751.395820 C =10424.076743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 1.070 2.930 4 H -0.291 1.291 5 H -0.244 1.244 6 H -0.235 1.235 7 C -0.621 4.621 8 H 0.034 0.966 9 C 0.193 3.807 10 O -0.571 6.571 11 C 0.065 3.935 12 N -0.645 5.645 13 C 0.724 3.276 14 O -0.605 6.605 15 N -0.671 5.671 16 C 0.171 3.829 17 C -0.128 4.128 18 C -0.034 4.034 19 C -0.135 4.135 20 C 0.543 3.457 21 O -0.543 6.543 22 O -0.501 6.501 23 C -0.055 4.055 24 C 0.049 3.951 25 F -0.132 7.132 26 C 0.149 3.851 27 H 0.258 0.742 28 H 0.375 0.625 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.422 0.578 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.436 0.564 35 H 0.181 0.819 36 H 0.071 0.929 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.127 4.731 -6.823 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.210 4.210 3 Si 0.889 3.111 4 H -0.218 1.218 5 H -0.169 1.169 6 H -0.158 1.158 7 C -0.659 4.659 8 H 0.052 0.948 9 C 0.152 3.848 10 O -0.381 6.381 11 C -0.057 4.057 12 N -0.381 5.381 13 C 0.428 3.572 14 O -0.485 6.485 15 N -0.318 5.318 16 C 0.073 3.927 17 C -0.148 4.148 18 C -0.053 4.053 19 C -0.137 4.137 20 C 0.389 3.611 21 O -0.435 6.435 22 O -0.315 6.315 23 C -0.074 4.074 24 C 0.027 3.973 25 F -0.111 7.111 26 C 0.026 3.974 27 H 0.067 0.933 28 H 0.225 0.775 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.260 0.740 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.299 0.701 35 H 0.198 0.802 36 H 0.090 0.910 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 23.425 4.855 -6.435 24.773 hybrid contribution -0.781 -1.214 -0.252 1.466 sum 22.644 3.641 -6.687 23.890 Atomic orbital electron populations 1.70953 1.08309 1.30583 1.45573 1.27342 0.96103 1.06310 0.91262 0.83869 0.75376 0.71387 0.80447 1.21761 1.16872 1.15816 1.22258 0.94660 0.95573 1.53392 0.94804 1.20312 0.91908 0.92351 0.80219 1.86363 1.79205 1.42881 1.29604 1.24652 0.87774 0.90993 1.02319 1.49226 1.03314 1.16895 1.68711 1.15455 0.80399 0.83400 0.77921 1.90838 1.71564 1.26572 1.59539 1.42304 1.07668 1.12807 1.68978 1.18061 0.82992 0.97551 0.94127 1.21305 0.93387 0.99047 1.01084 1.21294 0.93131 0.96656 0.94195 1.18843 0.91076 1.01659 1.02138 1.20440 0.87349 0.77167 0.76167 1.90914 1.66570 1.34894 1.51134 1.84508 1.33426 1.60057 1.53486 1.21369 0.90446 0.96605 0.98948 1.17209 0.91273 0.94076 0.94761 1.91523 1.78271 1.62932 1.78335 1.23150 0.81608 0.94510 0.98094 0.93274 0.77479 0.87767 0.88983 0.74022 0.83298 0.82884 0.70095 0.80210 0.91028 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.81 13.70 21.45 0.29 -51.51 16 2 C -0.01 -0.46 5.44 84.66 0.46 0.00 16 3 Si 1.07 39.88 24.52 68.60 1.68 41.56 16 4 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.24 -7.68 5.85 99.48 0.58 -7.10 16 6 H -0.23 -7.28 6.49 99.48 0.65 -6.63 16 7 C -0.62 -30.91 9.04 25.60 0.23 -30.67 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 9 C 0.19 8.03 1.07 -10.88 -0.01 8.02 16 10 O -0.57 -23.91 13.47 -148.98 -2.01 -25.92 16 11 C 0.06 2.21 5.22 86.44 0.45 2.67 16 12 N -0.64 -23.04 3.61 -857.71 -3.10 -26.13 16 13 C 0.72 25.21 8.62 179.05 1.54 26.76 16 14 O -0.60 -24.02 14.21 -3.97 -0.06 -24.08 16 15 N -0.67 -18.47 5.24 -317.00 -1.66 -20.14 16 16 C 0.17 4.31 6.38 38.38 0.24 4.56 16 17 C -0.13 -3.25 8.70 22.34 0.19 -3.06 16 18 C -0.03 -0.72 9.58 22.51 0.22 -0.50 16 19 C -0.13 -2.50 5.87 -20.09 -0.12 -2.62 16 20 C 0.54 9.38 8.26 70.25 0.58 9.96 16 21 O -0.54 -12.68 17.12 19.81 0.34 -12.34 16 22 O -0.50 -4.93 12.67 -56.65 -0.72 -5.64 16 23 C -0.05 -0.90 9.58 22.56 0.22 -0.69 16 24 C 0.05 1.02 7.29 22.43 0.16 1.18 16 25 F -0.13 -2.76 16.88 44.97 0.76 -2.00 16 26 C 0.15 5.82 8.23 86.48 0.71 6.53 16 27 H 0.26 14.88 8.73 -92.71 -0.81 14.07 16 28 H 0.37 14.16 6.14 -74.06 -0.45 13.71 16 29 H 0.10 3.45 7.93 -2.38 -0.02 3.44 16 30 H 0.09 2.66 6.88 -2.38 -0.02 2.64 16 31 H 0.42 9.81 8.18 -92.71 -0.76 9.05 16 32 H 0.15 4.46 5.86 -2.91 -0.02 4.45 16 33 H 0.15 3.02 7.64 -2.91 -0.02 2.99 16 34 H 0.44 0.36 9.11 -74.06 -0.67 -0.32 16 35 H 0.18 2.02 7.60 -2.91 -0.02 2.00 16 36 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.10 3.69 8.09 -2.39 -0.02 3.67 16 Total: -1.00 -67.80 326.51 -0.51 -68.31 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.92 Total: 35.76 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 4.88 Total: 22.13 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -4.47 Total: -97.78 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: -2.44 Total: -67.98 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.76 Total: -2.00 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.68 Total: 41.56 kcal Total: -67.80 -0.51 -68.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.802 kcal (2) G-P(sol) polarization free energy of solvation -67.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds