Wall clock time and date at job start Tue Mar 31 2020 14:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99514 * 2 1 4 4 H 1.48512 * 109.46843 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47297 * 299.99204 * 3 2 1 6 6 H 1.48500 * 109.47422 * 59.99976 * 3 2 1 7 7 C 1.37872 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00275 * 173.56828 * 7 2 1 9 9 C 1.50705 * 119.99946 * 353.56355 * 7 2 1 10 10 C 1.52999 * 115.54834 * 85.77400 * 9 7 2 11 11 O 1.42891 * 109.47365 * 65.05872 * 10 9 7 12 12 C 1.35928 * 117.00513 * 180.02562 * 11 10 9 13 13 C 1.38863 * 120.05456 * 270.28103 * 12 11 10 14 14 Cl 1.73595 * 120.04537 * 359.97438 * 13 12 11 15 15 C 1.38212 * 119.91668 * 180.22773 * 13 12 11 16 16 C 1.38290 * 120.04426 * 359.48888 * 15 13 12 17 17 C 1.38232 * 120.12034 * 0.25581 * 16 15 13 18 18 C 1.38195 * 120.07536 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.01995 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47045 * 264.99728 * 19 18 17 21 21 C 1.50705 * 109.47045 * 179.97438 * 20 19 18 22 22 O 1.20822 * 119.99974 * 0.02562 * 21 20 19 23 23 O 1.34225 * 119.99850 * 180.02562 * 21 20 19 24 24 C 1.53000 * 117.49953 * 231.44299 * 9 7 2 25 25 C 1.52993 * 117.49816 * 300.10138 * 9 7 2 26 26 H 0.96995 * 119.99840 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46887 * 305.05957 * 10 9 7 28 28 H 1.09004 * 109.46692 * 185.06153 * 10 9 7 29 29 H 1.07998 * 119.97845 * 179.76319 * 15 13 12 30 30 H 1.08004 * 119.94121 * 180.27664 * 16 15 13 31 31 H 1.07999 * 119.96140 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.47234 * 25.00381 * 19 18 17 33 33 H 1.09001 * 109.47029 * 145.00087 * 19 18 17 34 34 H 1.08996 * 109.47637 * 300.00406 * 20 19 18 35 35 H 1.09001 * 109.46914 * 60.00288 * 20 19 18 36 36 H 0.96704 * 116.99802 * 180.02562 * 23 21 20 37 37 H 1.09000 * 117.50109 * 215.00225 * 24 9 7 38 38 H 1.08998 * 117.49881 * 0.02562 * 24 9 7 39 39 H 1.09007 * 117.50496 * 359.97438 * 25 9 7 40 40 H 1.09001 * 117.50248 * 144.97210 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1970 -0.1042 9 6 1.2583 -2.4950 0.1474 10 6 0.7100 -3.0913 -1.1505 11 8 1.7968 -3.4554 -2.0038 12 6 1.4803 -4.0038 -3.2066 13 6 1.3334 -5.3794 -3.3267 14 17 1.5545 -6.4014 -1.9410 15 6 1.0161 -5.9343 -4.5521 16 6 0.8347 -5.1199 -5.6549 17 6 0.9752 -3.7499 -5.5361 18 6 1.2971 -3.1901 -4.3143 19 6 1.4494 -1.6963 -4.1860 20 6 2.9247 -1.3194 -4.3355 21 6 3.0770 0.1745 -4.2079 22 8 2.1054 0.8666 -4.0165 23 8 4.2921 0.7361 -4.3069 24 6 1.7417 -3.4691 1.2236 25 6 0.4348 -2.6971 1.4209 26 1 -0.4850 0.8400 -0.0004 27 1 0.0845 -2.3538 -1.6535 28 1 0.1159 -3.9760 -0.9213 29 1 0.9054 -7.0044 -4.6475 30 1 0.5824 -5.5550 -6.6107 31 1 0.8334 -3.1163 -6.3991 32 1 0.8678 -1.2035 -4.9650 33 1 1.0903 -1.3771 -3.2076 34 1 3.5064 -1.8122 -3.5565 35 1 3.2839 -1.6386 -5.3139 36 1 4.3398 1.6978 -4.2179 37 1 1.6692 -4.5349 1.0070 38 1 2.5993 -3.1689 1.8257 39 1 0.4331 -1.8893 2.1528 40 1 -0.4978 -3.2546 1.3341 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:58 Heat of formation + Delta-G solvation = -95.022075 kcal Electronic energy + Delta-G solvation = -25958.034670 eV Core-core repulsion = 22150.551267 eV Total energy + Delta-G solvation = -3807.483403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14681 -39.59874 -37.33689 -36.29460 -35.86216 -35.68591 -33.76131 -31.89244 -30.04389 -29.55106 -26.51169 -25.26137 -24.88108 -22.28926 -21.66006 -21.05824 -20.33815 -19.21198 -17.83374 -17.31051 -16.48834 -16.38904 -16.11946 -15.59736 -15.56117 -14.66288 -14.51774 -14.27586 -13.72107 -13.41374 -13.32855 -13.15559 -12.85497 -12.60345 -12.27048 -12.03770 -11.87505 -11.46324 -11.27435 -11.21637 -11.10511 -10.93993 -10.83644 -10.74257 -10.61547 -10.43109 -10.22668 -10.20142 -9.52178 -9.30960 -8.70828 -8.61118 -8.44706 -8.39535 -8.03909 -6.02155 -4.05774 1.21239 1.26559 2.36383 2.58355 3.29912 3.32751 3.41061 3.43640 3.59185 4.29072 4.45625 4.81632 4.91947 5.16818 5.23401 5.28998 5.31227 5.34347 5.38913 5.57805 5.65679 5.82811 5.88200 6.07168 6.10898 6.21181 6.30304 6.34947 6.37561 6.50293 6.62061 6.64896 6.68005 6.79057 6.80714 6.92687 7.08265 7.42567 7.48929 7.91967 8.20455 8.21644 8.47358 8.95487 9.60398 11.07269 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.006498 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.622286 B = 4308.077179 C = 6378.822574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.285 1.285 7 C -0.486 4.486 8 H 0.060 0.940 9 C 0.046 3.954 10 C 0.119 3.881 11 O -0.313 6.313 12 C 0.130 3.870 13 C -0.062 4.062 14 Cl -0.061 7.061 15 C -0.105 4.105 16 C -0.126 4.126 17 C -0.101 4.101 18 C -0.093 4.093 19 C -0.069 4.069 20 C -0.099 4.099 21 C 0.477 3.523 22 O -0.504 6.504 23 O -0.523 6.523 24 C -0.203 4.203 25 C -0.148 4.148 26 H 0.259 0.741 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.405 0.595 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 -7.894 -11.734 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.523 4.523 8 H 0.078 0.922 9 C 0.045 3.955 10 C 0.045 3.955 11 O -0.230 6.230 12 C 0.084 3.916 13 C -0.089 4.089 14 Cl -0.032 7.032 15 C -0.124 4.124 16 C -0.144 4.144 17 C -0.119 4.119 18 C -0.094 4.094 19 C -0.106 4.106 20 C -0.137 4.137 21 C 0.319 3.681 22 O -0.390 6.390 23 O -0.335 6.335 24 C -0.241 4.241 25 C -0.186 4.186 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.263 0.737 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.410 -8.047 -11.496 14.238 hybrid contribution 0.195 1.390 0.176 1.414 sum 2.605 -6.657 -11.320 13.388 Atomic orbital electron populations 1.69978 1.05777 1.26401 1.49374 1.24887 0.94718 0.98601 0.94426 0.86753 0.80337 0.84610 0.77879 1.19808 1.20292 1.21087 1.20350 0.92937 0.88290 1.50744 0.92179 1.18676 0.98490 0.93951 0.84339 1.22527 0.86451 0.95581 0.90904 1.86124 1.33544 1.79477 1.23857 1.18548 0.96168 0.88693 0.88194 1.21488 1.06316 0.91352 0.89768 1.98362 1.95544 1.67058 1.42263 1.20920 1.00322 1.00366 0.90809 1.20981 1.01784 0.93387 0.98235 1.21052 0.99166 0.94999 0.96658 1.20161 1.00316 0.96004 0.92905 1.20349 0.94287 0.89842 1.06110 1.21239 0.99446 0.87776 1.05234 1.23518 0.80097 0.92301 0.72187 1.90766 1.39944 1.64522 1.43807 1.84518 1.34539 1.29406 1.85035 1.22968 0.98176 0.95839 1.07070 1.22527 0.92343 1.01231 1.02485 0.93079 0.92228 0.95931 0.85141 0.85307 0.85335 0.90500 0.87535 0.86621 0.88452 0.73686 0.91536 0.90368 0.89641 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.66 12.90 55.43 0.72 -23.95 16 2 C 0.08 2.11 5.38 -17.82 -0.10 2.01 16 3 Si 0.88 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.49 -13.11 8.77 -34.44 -0.30 -13.41 16 8 H 0.06 1.67 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.12 1.61 -155.66 -0.25 0.87 16 10 C 0.12 2.67 5.55 37.16 0.21 2.87 16 11 O -0.31 -6.51 8.72 -19.51 -0.17 -6.68 16 12 C 0.13 2.27 5.69 -39.19 -0.22 2.04 16 13 C -0.06 -0.96 6.33 -39.36 -0.25 -1.21 16 14 Cl -0.06 -0.96 28.51 -51.86 -1.48 -2.44 16 15 C -0.11 -1.31 9.83 -39.57 -0.39 -1.69 16 16 C -0.13 -1.37 10.04 -39.56 -0.40 -1.77 16 17 C -0.10 -1.22 9.68 -39.60 -0.38 -1.60 16 18 C -0.09 -1.43 5.15 -104.48 -0.54 -1.97 16 19 C -0.07 -1.13 4.36 -27.88 -0.12 -1.25 16 20 C -0.10 -1.49 5.79 -27.88 -0.16 -1.65 16 21 C 0.48 8.04 8.33 36.01 0.30 8.34 16 22 O -0.50 -10.40 16.74 -18.75 -0.31 -10.71 16 23 O -0.52 -7.32 13.42 -39.24 -0.53 -7.84 16 24 C -0.20 -4.50 9.96 -26.70 -0.27 -4.77 16 25 C -0.15 -3.46 9.39 -26.70 -0.25 -3.71 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 27 H 0.06 1.46 7.18 -51.92 -0.37 1.08 16 28 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 33 H 0.11 2.24 6.38 -51.93 -0.33 1.91 16 34 H 0.12 1.87 8.14 -51.93 -0.42 1.44 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.41 4.13 9.10 45.56 0.41 4.54 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 39 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -31.31 364.92 -8.89 -40.21 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.48 Total: 6.25 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.12 Total: -16.91 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.72 Total: -23.95 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.01 Total: -25.23 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.48 Total: -2.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.31 -8.89 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.816 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds