Wall clock time and date at job start Tue Mar 31 2020 14:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99514 * 2 1 4 4 H 1.48512 * 109.46843 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47297 * 299.99204 * 3 2 1 6 6 H 1.48500 * 109.47422 * 59.99976 * 3 2 1 7 7 C 1.37872 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00275 * 173.56828 * 7 2 1 9 9 C 1.50705 * 119.99946 * 353.56355 * 7 2 1 10 10 C 1.52999 * 115.54834 * 85.77400 * 9 7 2 11 11 O 1.42891 * 109.47365 * 65.05872 * 10 9 7 12 12 C 1.35928 * 117.00513 * 180.02562 * 11 10 9 13 13 C 1.38863 * 120.05456 * 270.28103 * 12 11 10 14 14 Cl 1.73595 * 120.04537 * 359.97438 * 13 12 11 15 15 C 1.38212 * 119.91668 * 180.22773 * 13 12 11 16 16 C 1.38290 * 120.04426 * 359.48888 * 15 13 12 17 17 C 1.38232 * 120.12034 * 0.25581 * 16 15 13 18 18 C 1.38195 * 120.07536 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.01995 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47045 * 264.99728 * 19 18 17 21 21 C 1.50705 * 109.47045 * 179.97438 * 20 19 18 22 22 O 1.20822 * 119.99974 * 0.02562 * 21 20 19 23 23 O 1.34225 * 119.99850 * 180.02562 * 21 20 19 24 24 C 1.53000 * 117.49953 * 231.44299 * 9 7 2 25 25 C 1.52993 * 117.49816 * 300.10138 * 9 7 2 26 26 H 0.96995 * 119.99840 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46887 * 305.05957 * 10 9 7 28 28 H 1.09004 * 109.46692 * 185.06153 * 10 9 7 29 29 H 1.07998 * 119.97845 * 179.76319 * 15 13 12 30 30 H 1.08004 * 119.94121 * 180.27664 * 16 15 13 31 31 H 1.07999 * 119.96140 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.47234 * 25.00381 * 19 18 17 33 33 H 1.09001 * 109.47029 * 145.00087 * 19 18 17 34 34 H 1.08996 * 109.47637 * 300.00406 * 20 19 18 35 35 H 1.09001 * 109.46914 * 60.00288 * 20 19 18 36 36 H 0.96704 * 116.99802 * 180.02562 * 23 21 20 37 37 H 1.09000 * 117.50109 * 215.00225 * 24 9 7 38 38 H 1.08998 * 117.49881 * 0.02562 * 24 9 7 39 39 H 1.09007 * 117.50496 * 359.97438 * 25 9 7 40 40 H 1.09001 * 117.50248 * 144.97210 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1970 -0.1042 9 6 1.2583 -2.4950 0.1474 10 6 0.7100 -3.0913 -1.1505 11 8 1.7968 -3.4554 -2.0038 12 6 1.4803 -4.0038 -3.2066 13 6 1.3334 -5.3794 -3.3267 14 17 1.5545 -6.4014 -1.9410 15 6 1.0161 -5.9343 -4.5521 16 6 0.8347 -5.1199 -5.6549 17 6 0.9752 -3.7499 -5.5361 18 6 1.2971 -3.1901 -4.3143 19 6 1.4494 -1.6963 -4.1860 20 6 2.9247 -1.3194 -4.3355 21 6 3.0770 0.1745 -4.2079 22 8 2.1054 0.8666 -4.0165 23 8 4.2921 0.7361 -4.3069 24 6 1.7417 -3.4691 1.2236 25 6 0.4348 -2.6971 1.4209 26 1 -0.4850 0.8400 -0.0004 27 1 0.0845 -2.3538 -1.6535 28 1 0.1159 -3.9760 -0.9213 29 1 0.9054 -7.0044 -4.6475 30 1 0.5824 -5.5550 -6.6107 31 1 0.8334 -3.1163 -6.3991 32 1 0.8678 -1.2035 -4.9650 33 1 1.0903 -1.3771 -3.2076 34 1 3.5064 -1.8122 -3.5565 35 1 3.2839 -1.6386 -5.3139 36 1 4.3398 1.6978 -4.2179 37 1 1.6692 -4.5349 1.0070 38 1 2.5993 -3.1689 1.8257 39 1 0.4331 -1.8893 2.1528 40 1 -0.4978 -3.2546 1.3341 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:57 Heat of formation + Delta-G solvation = -112.454271 kcal Electronic energy + Delta-G solvation = -25958.790587 eV Core-core repulsion = 22150.551267 eV Total energy + Delta-G solvation = -3808.239320 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42214 -40.87568 -38.89634 -37.46618 -37.31200 -37.13638 -34.98163 -33.99083 -31.14075 -30.74524 -28.25003 -27.16511 -26.21596 -23.42661 -22.95142 -22.76672 -21.56313 -21.14369 -19.13539 -18.64388 -18.14511 -17.64749 -17.61290 -16.91504 -16.73530 -16.62750 -16.15832 -15.48357 -15.38081 -14.79763 -14.54797 -14.36950 -14.27193 -14.16081 -13.74561 -13.46581 -13.22668 -12.99370 -12.89764 -12.84320 -12.53042 -12.45935 -12.36194 -12.19808 -12.08770 -12.02434 -11.86475 -11.60930 -11.38888 -11.00142 -10.53091 -10.45739 -10.09810 -9.66812 -9.44406 -8.13763 -6.20692 0.13158 0.19257 1.22534 1.24138 1.31991 1.36170 1.43657 2.15342 2.38804 2.46513 2.97150 3.18473 3.55723 3.71175 3.90520 3.94876 4.18051 4.25259 4.29980 4.37658 4.39952 4.47603 4.50796 4.55492 4.64566 4.75301 4.80232 4.91346 4.98095 4.98464 5.18932 5.21858 5.27175 5.38496 5.52994 5.58715 5.59976 5.62186 5.75725 5.80920 6.39634 6.75853 6.82406 6.99200 7.46755 8.94968 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.006498 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.622286 B = 4308.077179 C = 6378.822574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.040 3.960 3 Si 0.924 3.076 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.491 4.491 8 H 0.045 0.955 9 C 0.018 3.982 10 C 0.141 3.859 11 O -0.328 6.328 12 C 0.086 3.914 13 C -0.075 4.075 14 Cl -0.072 7.072 15 C -0.101 4.101 16 C -0.104 4.104 17 C -0.092 4.092 18 C -0.103 4.103 19 C -0.061 4.061 20 C -0.095 4.095 21 C 0.479 3.521 22 O -0.550 6.550 23 O -0.514 6.514 24 C -0.181 4.181 25 C -0.149 4.149 26 H 0.257 0.743 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.158 0.842 30 H 0.175 0.825 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.422 0.578 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -9.553 -14.328 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.161 4.161 3 Si 0.751 3.249 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.017 3.983 10 C 0.067 3.933 11 O -0.245 6.245 12 C 0.042 3.958 13 C -0.102 4.102 14 Cl -0.043 7.043 15 C -0.119 4.119 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.103 4.103 19 C -0.098 4.098 20 C -0.132 4.132 21 C 0.323 3.677 22 O -0.440 6.440 23 O -0.327 6.327 24 C -0.218 4.218 25 C -0.187 4.187 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.176 0.824 30 H 0.192 0.808 31 H 0.179 0.821 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.158 0.842 36 H 0.283 0.717 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.002 -9.710 -14.088 17.371 hybrid contribution 0.064 1.849 0.843 2.033 sum 3.066 -7.860 -13.245 15.704 Atomic orbital electron populations 1.70060 1.06647 1.26639 1.50502 1.25392 0.95319 1.00873 0.94491 0.86007 0.79712 0.81755 0.77440 1.19146 1.21282 1.20390 1.20475 0.92375 0.89813 1.50200 0.93663 1.18798 0.99575 0.94083 0.85823 1.21978 0.86533 0.94586 0.90195 1.86083 1.33009 1.80002 1.25393 1.18862 0.99751 0.89885 0.87343 1.21659 1.07226 0.90544 0.90748 1.98351 1.95676 1.67007 1.43232 1.21329 0.98779 1.02071 0.89758 1.21511 0.98673 0.92576 0.99413 1.21421 0.97344 0.96196 0.96062 1.20161 1.01339 0.94930 0.93906 1.20165 0.95213 0.91173 1.03288 1.21276 0.98474 0.86441 1.06982 1.23894 0.80030 0.92937 0.70865 1.90752 1.41495 1.65652 1.46113 1.84482 1.32923 1.31043 1.84253 1.22931 0.97350 0.96371 1.05179 1.22447 0.93501 1.01158 1.01580 0.93347 0.95493 0.95396 0.82411 0.80778 0.82077 0.89329 0.93081 0.88092 0.84150 0.71737 0.89651 0.90344 0.91516 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.49 12.90 21.45 0.28 -52.21 16 2 C 0.04 2.26 5.38 84.65 0.46 2.72 16 3 Si 0.92 45.62 29.54 68.60 2.03 47.64 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.49 -27.47 8.77 25.60 0.22 -27.24 16 8 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.02 0.89 1.61 -52.93 -0.09 0.80 16 10 C 0.14 6.59 5.55 71.98 0.40 6.99 16 11 O -0.33 -14.06 8.72 -92.73 -0.81 -14.86 16 12 C 0.09 3.01 5.69 22.52 0.13 3.14 16 13 C -0.07 -2.21 6.33 22.41 0.14 -2.07 16 14 Cl -0.07 -2.18 28.51 -2.72 -0.08 -2.25 16 15 C -0.10 -2.12 9.83 22.28 0.22 -1.90 16 16 C -0.10 -1.74 10.04 22.28 0.22 -1.52 16 17 C -0.09 -1.87 9.68 22.26 0.22 -1.66 16 18 C -0.10 -3.04 5.15 -19.77 -0.10 -3.14 16 19 C -0.06 -2.03 4.36 29.85 0.13 -1.90 16 20 C -0.09 -2.79 5.79 29.85 0.17 -2.62 16 21 C 0.48 16.12 8.33 71.24 0.59 16.72 16 22 O -0.55 -23.29 16.74 21.98 0.37 -22.92 16 23 O -0.51 -13.85 13.42 -51.37 -0.69 -14.54 16 24 C -0.18 -8.06 9.96 30.62 0.30 -7.75 16 25 C -0.15 -7.10 9.39 30.61 0.29 -6.82 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.03 1.41 7.18 -2.38 -0.02 1.39 16 28 H 0.03 1.23 8.09 -2.39 -0.02 1.21 16 29 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 31 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.09 2.63 8.01 -2.39 -0.02 2.62 16 33 H 0.05 2.29 6.38 -2.39 -0.02 2.28 16 34 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.42 8.15 9.10 -74.05 -0.67 7.48 16 37 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.07 3.39 8.14 -2.38 -0.02 3.37 16 40 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -71.61 364.92 4.80 -66.81 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.40 Total: 18.60 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 3.31 Total: -26.26 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.28 Total: -52.21 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -1.13 Total: -52.32 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.08 Total: -2.25 kcal Total: -71.61 4.80 -66.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.645 kcal (2) G-P(sol) polarization free energy of solvation -71.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds