Wall clock time and date at job start Tue Mar 31 2020 14:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00260 * 2 1 4 4 H 1.48496 * 109.47042 * 239.99957 * 3 2 1 5 5 H 1.48502 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46962 * 119.99884 * 3 2 1 7 7 C 1.37882 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99897 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00019 * 0.02562 * 7 2 1 10 10 O 1.42901 * 113.41196 * 46.79767 * 9 7 2 11 11 C 1.53497 * 114.20376 * 179.97438 * 9 7 2 12 12 N 1.47067 * 87.98424 * 139.65506 * 11 9 7 13 13 C 1.34776 * 136.06121 * 152.84104 * 12 11 9 14 14 O 1.21582 * 119.99829 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00316 * 180.02562 * 13 12 11 16 16 C 1.39415 * 119.99832 * 185.32222 * 15 13 12 17 17 C 1.39238 * 119.89560 * 33.57656 * 16 15 13 18 18 C 1.36549 * 120.27871 * 179.97438 * 17 16 15 19 19 C 1.39880 * 120.06947 * 0.25568 * 18 17 16 20 20 C 1.47295 * 120.10263 * 179.71827 * 19 18 17 21 21 O 1.21530 * 119.99988 * 180.02562 * 20 19 18 22 22 O 1.34765 * 119.99819 * 0.02562 * 20 19 18 23 23 C 1.40084 * 119.79290 * 359.49287 * 19 18 17 24 24 F 1.35103 * 120.13736 * 180.22899 * 23 19 18 25 25 C 1.38040 * 119.72401 * 0.50382 * 23 19 18 26 26 C 1.47070 * 87.88622 * 333.10121 * 12 11 9 27 27 H 0.97007 * 119.99450 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00100 * 313.19367 * 10 9 7 29 29 H 1.08994 * 113.46722 * 24.87400 * 11 9 7 30 30 H 1.09003 * 113.46880 * 254.43315 * 11 9 7 31 31 H 0.96994 * 120.00429 * 5.32572 * 15 13 12 32 32 H 1.07999 * 119.86082 * 359.97438 * 17 16 15 33 33 H 1.08003 * 119.96257 * 179.97438 * 18 17 16 34 34 H 0.96697 * 117.00053 * 179.97438 * 22 20 19 35 35 H 1.08001 * 120.03493 * 179.77145 * 25 23 19 36 36 H 1.08997 * 113.46675 * 141.68025 * 26 12 11 37 37 H 1.09002 * 113.46727 * 272.11838 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1899 -2.5422 -0.9558 11 6 2.1486 -3.7443 0.0005 12 7 1.2097 -4.3574 0.9520 13 6 0.8343 -5.6113 1.2735 14 8 1.3296 -6.5607 0.6977 15 7 -0.0903 -5.8127 2.2333 16 6 -0.3979 -7.1091 2.6436 17 6 0.5939 -8.0863 2.6581 18 6 0.3013 -9.3583 3.0590 19 6 -1.0000 -9.6873 3.4527 20 6 -1.3178 -11.0608 3.8794 21 8 -2.4491 -11.3447 4.2206 22 8 -0.3540 -12.0026 3.8915 23 6 -1.9989 -8.7053 3.4443 24 9 -3.2571 -9.0142 3.8276 25 6 -1.6938 -7.4220 3.0375 26 6 0.8560 -3.0000 1.3939 27 1 -0.4850 0.8402 0.0004 28 1 -0.3737 -1.7564 -0.9535 29 1 3.1382 -3.5658 0.4211 30 1 2.1849 -4.2533 -0.9626 31 1 -0.5416 -5.0559 2.6385 32 1 1.5988 -7.8370 2.3509 33 1 1.0745 -10.1124 3.0679 34 1 -0.6103 -12.8894 4.1795 35 1 -2.4609 -6.6619 3.0255 36 1 -0.2047 -2.8775 1.6131 37 1 1.4978 -2.6214 2.1894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:30 Heat of formation + Delta-G solvation = -135.669964 kcal Electronic energy + Delta-G solvation = -26477.221285 eV Core-core repulsion = 22136.098539 eV Total energy + Delta-G solvation = -4341.122746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.08908 -40.79685 -40.21585 -39.06091 -37.60469 -36.24518 -34.72030 -34.18012 -32.30720 -31.12614 -30.49564 -28.52143 -25.70921 -25.30493 -24.25849 -23.24803 -21.86141 -20.64259 -19.27881 -18.43865 -18.27651 -17.85006 -17.38158 -17.12355 -16.30832 -16.12336 -15.85003 -15.36513 -15.33528 -15.19122 -14.99667 -14.63614 -14.21247 -13.83889 -13.60275 -13.21161 -13.05991 -12.84440 -12.76566 -12.44157 -12.15539 -11.81186 -11.71819 -11.66957 -11.16117 -11.13431 -10.80714 -10.60809 -10.53916 -10.39595 -10.09756 -9.46161 -9.14670 -8.90303 -8.62056 -8.44532 -7.99431 -6.51725 -4.62488 0.33885 0.99511 2.25554 2.53654 2.77175 3.09005 3.15848 3.17578 3.21774 3.58193 3.87716 4.04766 4.11505 4.44244 4.71962 4.81242 4.86093 4.94960 5.16319 5.39706 5.59884 5.72108 5.77339 5.90992 5.94987 6.04498 6.18158 6.23607 6.24666 6.25974 6.37252 6.49408 6.69987 6.93142 7.24226 7.51858 7.67107 7.67230 8.31906 8.41585 8.69455 9.09443 9.36156 10.55082 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.033240 B = 0.002406 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.150932 B =11636.677611 C =12113.400795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.242 3.758 10 O -0.571 6.571 11 C 0.129 3.871 12 N -0.648 5.648 13 C 0.728 3.272 14 O -0.583 6.583 15 N -0.683 5.683 16 C 0.259 3.741 17 C -0.152 4.152 18 C -0.009 4.009 19 C -0.203 4.203 20 C 0.531 3.469 21 O -0.511 6.511 22 O -0.512 6.512 23 C 0.193 3.807 24 F -0.114 7.114 25 C -0.211 4.211 26 C 0.069 3.931 27 H 0.275 0.725 28 H 0.395 0.605 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.413 0.587 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.414 0.586 35 H 0.150 0.850 36 H 0.063 0.937 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -12.616 8.462 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.200 3.800 10 O -0.384 6.384 11 C 0.006 3.994 12 N -0.383 5.383 13 C 0.432 3.568 14 O -0.462 6.462 15 N -0.329 5.329 16 C 0.159 3.841 17 C -0.173 4.173 18 C -0.028 4.028 19 C -0.207 4.207 20 C 0.376 3.624 21 O -0.400 6.400 22 O -0.324 6.324 23 C 0.172 3.828 24 F -0.092 7.092 25 C -0.233 4.233 26 C -0.054 4.054 27 H 0.086 0.914 28 H 0.251 0.749 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.249 0.751 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.272 0.728 35 H 0.167 0.833 36 H 0.081 0.919 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.147 -13.524 7.877 15.651 hybrid contribution -0.630 1.213 0.720 1.545 sum -0.777 -12.310 8.597 15.035 Atomic orbital electron populations 1.69247 1.06237 1.28484 1.49860 1.25087 0.95048 1.00032 0.92860 0.86337 0.79473 0.81378 0.79066 1.19749 1.20962 1.19837 1.21364 0.93943 0.89577 1.52447 0.90828 1.19472 0.85470 0.91055 0.84044 1.86059 1.44941 1.48360 1.59042 1.23309 0.93285 0.91283 0.91489 1.48862 1.44220 1.03017 1.42234 1.15192 0.79545 0.82549 0.79484 1.90899 1.59433 1.39984 1.55863 1.42692 1.43104 1.06568 1.40492 1.17488 0.91489 0.84820 0.90283 1.21063 1.00887 0.92555 1.02747 1.20919 0.94202 0.96426 0.91262 1.18935 0.95620 0.90770 1.15348 1.20486 0.82187 0.85487 0.74235 1.90952 1.22145 1.81819 1.45110 1.84554 1.42872 1.23842 1.81113 1.17199 0.78977 0.91926 0.94661 1.91600 1.36669 1.93371 1.87556 1.20729 0.96424 0.96136 1.10003 1.24263 1.00353 0.77552 1.03261 0.91409 0.74873 0.89398 0.91225 0.75080 0.82939 0.83295 0.72778 0.83274 0.91878 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.44 11.01 55.43 0.61 -20.83 16 2 C 0.07 1.70 5.40 -17.82 -0.10 1.60 16 3 Si 0.91 18.37 29.54 -169.99 -5.02 13.35 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.54 -12.44 8.69 -34.44 -0.30 -12.74 16 8 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.33 1.57 -91.39 -0.14 5.19 16 10 O -0.57 -13.83 13.53 -35.23 -0.48 -14.31 16 11 C 0.13 2.55 8.04 -8.50 -0.07 2.48 16 12 N -0.65 -12.25 3.69 -191.16 -0.71 -12.96 16 13 C 0.73 13.32 8.52 -86.92 -0.74 12.58 16 14 O -0.58 -12.05 14.79 5.29 0.08 -11.97 16 15 N -0.68 -9.80 5.32 -14.23 -0.08 -9.88 16 16 C 0.26 3.45 6.27 -83.76 -0.53 2.92 16 17 C -0.15 -1.97 8.57 -39.82 -0.34 -2.31 16 18 C -0.01 -0.10 9.55 -39.58 -0.38 -0.48 16 19 C -0.20 -2.49 5.88 -104.91 -0.62 -3.11 16 20 C 0.53 6.37 8.26 34.41 0.28 6.65 16 21 O -0.51 -7.60 16.12 -19.29 -0.31 -7.92 16 22 O -0.51 -4.26 12.67 -40.67 -0.52 -4.78 16 23 C 0.19 2.49 7.28 -38.96 -0.28 2.20 16 24 F -0.11 -1.61 15.55 2.25 0.04 -1.58 16 25 C -0.21 -2.52 9.93 -39.37 -0.39 -2.91 16 26 C 0.07 1.31 7.70 -8.63 -0.07 1.24 16 27 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 28 H 0.39 9.71 6.33 45.56 0.29 10.00 16 29 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.41 5.04 8.54 -40.82 -0.35 4.69 16 32 H 0.15 2.15 6.40 -52.49 -0.34 1.82 16 33 H 0.15 1.33 7.60 -52.48 -0.40 0.93 16 34 H 0.41 1.53 9.11 45.56 0.42 1.95 16 35 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -29.36 333.84 -7.05 -36.42 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -2.03 Total: 16.10 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: -3.67 Total: 13.31 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.17 Total: -43.66 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.22 Total: -38.97 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.36 -7.05 -36.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.254 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds