Wall clock time and date at job start Tue Mar 31 2020 14:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00260 * 2 1 4 4 H 1.48496 * 109.47042 * 239.99957 * 3 2 1 5 5 H 1.48502 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46962 * 119.99884 * 3 2 1 7 7 C 1.37882 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99897 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00019 * 0.02562 * 7 2 1 10 10 O 1.42901 * 113.41196 * 46.79767 * 9 7 2 11 11 C 1.53497 * 114.20376 * 179.97438 * 9 7 2 12 12 N 1.47067 * 87.98424 * 139.65506 * 11 9 7 13 13 C 1.34776 * 136.06121 * 152.84104 * 12 11 9 14 14 O 1.21582 * 119.99829 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00316 * 180.02562 * 13 12 11 16 16 C 1.39415 * 119.99832 * 185.32222 * 15 13 12 17 17 C 1.39238 * 119.89560 * 33.57656 * 16 15 13 18 18 C 1.36549 * 120.27871 * 179.97438 * 17 16 15 19 19 C 1.39880 * 120.06947 * 0.25568 * 18 17 16 20 20 C 1.47295 * 120.10263 * 179.71827 * 19 18 17 21 21 O 1.21530 * 119.99988 * 180.02562 * 20 19 18 22 22 O 1.34765 * 119.99819 * 0.02562 * 20 19 18 23 23 C 1.40084 * 119.79290 * 359.49287 * 19 18 17 24 24 F 1.35103 * 120.13736 * 180.22899 * 23 19 18 25 25 C 1.38040 * 119.72401 * 0.50382 * 23 19 18 26 26 C 1.47070 * 87.88622 * 333.10121 * 12 11 9 27 27 H 0.97007 * 119.99450 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00100 * 313.19367 * 10 9 7 29 29 H 1.08994 * 113.46722 * 24.87400 * 11 9 7 30 30 H 1.09003 * 113.46880 * 254.43315 * 11 9 7 31 31 H 0.96994 * 120.00429 * 5.32572 * 15 13 12 32 32 H 1.07999 * 119.86082 * 359.97438 * 17 16 15 33 33 H 1.08003 * 119.96257 * 179.97438 * 18 17 16 34 34 H 0.96697 * 117.00053 * 179.97438 * 22 20 19 35 35 H 1.08001 * 120.03493 * 179.77145 * 25 23 19 36 36 H 1.08997 * 113.46675 * 141.68025 * 26 12 11 37 37 H 1.09002 * 113.46727 * 272.11838 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1899 -2.5422 -0.9558 11 6 2.1486 -3.7443 0.0005 12 7 1.2097 -4.3574 0.9520 13 6 0.8343 -5.6113 1.2735 14 8 1.3296 -6.5607 0.6977 15 7 -0.0903 -5.8127 2.2333 16 6 -0.3979 -7.1091 2.6436 17 6 0.5939 -8.0863 2.6581 18 6 0.3013 -9.3583 3.0590 19 6 -1.0000 -9.6873 3.4527 20 6 -1.3178 -11.0608 3.8794 21 8 -2.4491 -11.3447 4.2206 22 8 -0.3540 -12.0026 3.8915 23 6 -1.9989 -8.7053 3.4443 24 9 -3.2571 -9.0142 3.8276 25 6 -1.6938 -7.4220 3.0375 26 6 0.8560 -3.0000 1.3939 27 1 -0.4850 0.8402 0.0004 28 1 -0.3737 -1.7564 -0.9535 29 1 3.1382 -3.5658 0.4211 30 1 2.1849 -4.2533 -0.9626 31 1 -0.5416 -5.0559 2.6385 32 1 1.5988 -7.8370 2.3509 33 1 1.0745 -10.1124 3.0679 34 1 -0.6103 -12.8894 4.1795 35 1 -2.4609 -6.6619 3.0255 36 1 -0.2047 -2.8775 1.6131 37 1 1.4978 -2.6214 2.1894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:30 Heat of formation + Delta-G solvation = -157.036696 kcal Electronic energy + Delta-G solvation = -26478.147816 eV Core-core repulsion = 22136.098539 eV Total energy + Delta-G solvation = -4342.049277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.12738 -42.02791 -41.26224 -40.36285 -38.92950 -37.09717 -35.95444 -35.89854 -34.10494 -32.15053 -31.62723 -29.98497 -27.29665 -26.85272 -25.38035 -24.22594 -22.95295 -21.99477 -20.71913 -19.66343 -19.35357 -19.19996 -18.60606 -18.34202 -17.41342 -17.20524 -17.12010 -16.87245 -16.62779 -16.41215 -16.29426 -15.82500 -15.54642 -15.14737 -14.77022 -14.54951 -14.44770 -14.27336 -13.79698 -13.74206 -13.54737 -13.38332 -12.79540 -12.76301 -12.70668 -12.61609 -12.22228 -12.15898 -11.86044 -11.71140 -11.52695 -11.10487 -10.66325 -10.27451 -10.11344 -9.77875 -9.34130 -8.26646 -6.42830 -0.66003 0.03245 1.17994 1.34687 1.50292 1.53772 1.59819 1.92876 1.95751 2.40999 2.50442 2.64104 2.96661 3.01395 3.50785 3.71312 3.83769 3.92637 3.99908 4.11900 4.21200 4.42378 4.62378 4.65827 4.74686 4.84833 4.86011 4.91463 4.96933 5.04612 5.18765 5.25132 5.51332 5.64870 5.74632 5.90349 6.01347 6.63431 6.87785 6.92016 7.27355 7.32863 7.50347 8.79079 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.033240 B = 0.002406 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.150932 B =11636.677611 C =12113.400795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.217 3.783 10 O -0.586 6.586 11 C 0.131 3.869 12 N -0.650 5.650 13 C 0.728 3.272 14 O -0.610 6.610 15 N -0.671 5.671 16 C 0.241 3.759 17 C -0.158 4.158 18 C 0.006 3.994 19 C -0.206 4.206 20 C 0.538 3.462 21 O -0.544 6.544 22 O -0.498 6.498 23 C 0.179 3.821 24 F -0.123 7.123 25 C -0.197 4.197 26 C 0.085 3.915 27 H 0.276 0.724 28 H 0.389 0.611 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.423 0.577 32 H 0.142 0.858 33 H 0.175 0.825 34 H 0.435 0.565 35 H 0.168 0.832 36 H 0.065 0.935 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.271 -13.123 9.478 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.176 3.824 10 O -0.399 6.399 11 C 0.008 3.992 12 N -0.385 5.385 13 C 0.432 3.568 14 O -0.491 6.491 15 N -0.318 5.318 16 C 0.142 3.858 17 C -0.178 4.178 18 C -0.013 4.013 19 C -0.209 4.209 20 C 0.384 3.616 21 O -0.437 6.437 22 O -0.312 6.312 23 C 0.158 3.842 24 F -0.101 7.101 25 C -0.218 4.218 26 C -0.038 4.038 27 H 0.086 0.914 28 H 0.245 0.755 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.262 0.738 32 H 0.160 0.840 33 H 0.192 0.808 34 H 0.298 0.702 35 H 0.185 0.815 36 H 0.083 0.917 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.482 -14.072 8.928 16.673 hybrid contribution -0.803 1.240 0.402 1.531 sum -0.321 -12.833 9.330 15.869 Atomic orbital electron populations 1.69314 1.07115 1.28970 1.50384 1.25732 0.95721 1.02586 0.92712 0.85446 0.78239 0.78066 0.78928 1.20083 1.21152 1.19123 1.21624 0.94294 0.90357 1.52489 0.90494 1.19774 0.85613 0.91710 0.85345 1.86044 1.45527 1.48105 1.60271 1.23285 0.94078 0.90280 0.91516 1.48761 1.44277 1.03293 1.42198 1.15279 0.79890 0.81820 0.79851 1.90878 1.60586 1.40553 1.57047 1.42432 1.42155 1.07543 1.39629 1.17613 0.92198 0.84442 0.91509 1.21066 1.00395 0.93290 1.03093 1.21080 0.94282 0.96168 0.89747 1.19131 0.95810 0.91124 1.14809 1.20400 0.82010 0.85810 0.73424 1.90947 1.23591 1.82396 1.46730 1.84502 1.41446 1.24822 1.80435 1.17380 0.78869 0.92510 0.95397 1.91578 1.37299 1.93470 1.87795 1.20793 0.96231 0.96263 1.08556 1.24023 1.00719 0.77270 1.01764 0.91416 0.75491 0.87353 0.92527 0.73848 0.84046 0.80767 0.70209 0.81488 0.91677 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -43.60 11.01 21.45 0.24 -43.37 16 2 C 0.03 1.52 5.40 84.66 0.46 1.98 16 3 Si 0.97 37.07 29.54 68.60 2.03 39.09 16 4 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.29 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 7 C -0.55 -25.24 8.69 25.60 0.22 -25.01 16 8 H 0.08 3.39 7.81 -2.91 -0.02 3.36 16 9 C 0.22 9.51 1.57 -11.29 -0.02 9.49 16 10 O -0.59 -28.70 13.53 -148.98 -2.02 -30.72 16 11 C 0.13 5.14 8.04 83.18 0.67 5.81 16 12 N -0.65 -24.05 3.69 -877.45 -3.24 -27.29 16 13 C 0.73 26.04 8.52 179.05 1.53 27.57 16 14 O -0.61 -24.94 14.79 -3.97 -0.06 -25.00 16 15 N -0.67 -18.48 5.32 -317.21 -1.69 -20.17 16 16 C 0.24 6.10 6.27 38.36 0.24 6.34 16 17 C -0.16 -3.89 8.57 22.12 0.19 -3.70 16 18 C 0.01 0.12 9.55 22.27 0.21 0.33 16 19 C -0.21 -4.69 5.88 -20.05 -0.12 -4.81 16 20 C 0.54 11.91 8.26 70.20 0.58 12.49 16 21 O -0.54 -15.62 16.12 19.74 0.32 -15.30 16 22 O -0.50 -6.89 12.67 -56.76 -0.72 -7.61 16 23 C 0.18 4.39 7.28 22.67 0.17 4.55 16 24 F -0.12 -3.39 15.55 44.97 0.70 -2.69 16 25 C -0.20 -4.42 9.93 22.41 0.22 -4.20 16 26 C 0.08 3.15 7.70 83.10 0.64 3.79 16 27 H 0.28 12.56 8.31 -92.70 -0.77 11.78 16 28 H 0.39 19.47 6.33 -74.06 -0.47 19.00 16 29 H 0.11 3.74 8.10 -2.39 -0.02 3.72 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.42 9.71 8.54 -92.71 -0.79 8.92 16 32 H 0.14 3.88 6.40 -2.91 -0.02 3.86 16 33 H 0.17 2.58 7.60 -2.91 -0.02 2.56 16 34 H 0.44 1.96 9.11 -74.06 -0.67 1.28 16 35 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.10 3.34 8.10 -2.39 -0.02 3.33 16 Total: -1.00 -61.97 333.84 -0.20 -62.18 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -0.75 Total: 36.25 kcal Atomic # 6 Polarization: 29.64 SS G_CDS: 4.99 Total: 34.63 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -4.69 Total: -90.82 kcal Atomic # 8 Polarization: -76.15 SS G_CDS: -2.48 Total: -78.63 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.70 Total: -2.69 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.09 kcal Total: -61.97 -0.20 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.862 kcal (2) G-P(sol) polarization free energy of solvation -61.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds