Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99659 * 2 1 4 4 H 1.48497 * 109.47298 * 269.99999 * 3 2 1 5 5 H 1.48491 * 109.47409 * 30.00633 * 3 2 1 6 6 H 1.48510 * 109.46584 * 150.00492 * 3 2 1 7 7 C 1.37876 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99577 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99943 * 359.97438 * 7 2 1 10 10 O 1.42897 * 113.28329 * 46.93405 * 9 7 2 11 11 C 1.53497 * 114.20613 * 180.02562 * 9 7 2 12 12 N 1.47065 * 87.98929 * 139.85077 * 11 9 7 13 13 C 1.34770 * 136.06177 * 152.83976 * 12 11 9 14 14 O 1.21591 * 119.99812 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00363 * 180.02562 * 13 12 11 16 16 C 1.40113 * 120.00166 * 184.47333 * 15 13 12 17 17 C 1.38437 * 120.00613 * 325.32451 * 16 15 13 18 18 C 1.39626 * 119.80290 * 179.97438 * 17 16 15 19 19 C 1.47609 * 120.10078 * 180.02562 * 18 17 16 20 20 O 1.21493 * 119.99577 * 359.97378 * 19 18 17 21 21 O 1.34728 * 120.00495 * 179.97438 * 19 18 17 22 22 C 1.39718 * 119.80699 * 359.97438 * 18 17 16 23 23 C 1.37874 * 120.00589 * 0.02562 * 22 18 17 24 24 C 1.38514 * 120.20147 * 0.25432 * 23 22 18 25 25 F 1.35103 * 119.90750 * 179.74771 * 24 23 22 26 26 C 1.47066 * 87.88104 * 333.10348 * 12 11 9 27 27 H 0.97001 * 119.99831 * 359.97438 * 1 2 3 28 28 H 0.96694 * 114.00066 * 313.06392 * 10 9 7 29 29 H 1.09001 * 113.46786 * 25.06810 * 11 9 7 30 30 H 1.09008 * 113.46489 * 254.62918 * 11 9 7 31 31 H 0.96999 * 119.99687 * 4.47782 * 15 13 12 32 32 H 1.08005 * 120.09635 * 0.02562 * 17 16 15 33 33 H 0.96702 * 117.00140 * 179.97438 * 21 19 18 34 34 H 1.08005 * 119.99611 * 180.02562 * 22 18 17 35 35 H 1.07999 * 119.89899 * 179.97438 * 23 22 18 36 36 H 1.09007 * 113.46851 * 141.68334 * 26 12 11 37 37 H 1.09002 * 113.46594 * 272.11764 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1920 -2.5399 -0.9591 11 6 2.1488 -3.7441 -0.0005 12 7 1.2074 -4.3593 0.9471 13 6 0.8311 -5.6138 1.2650 14 8 1.3281 -6.5621 0.6886 15 7 -0.0960 -5.8173 2.2218 16 6 -0.4191 -7.1218 2.6181 17 6 -0.4138 -8.1488 1.6898 18 6 -0.7359 -9.4472 2.0895 19 6 -0.7318 -10.5473 1.1053 20 8 -0.4482 -10.3234 -0.0547 21 8 -1.0424 -11.7996 1.4932 22 6 -1.0612 -9.7025 3.4241 23 6 -1.0640 -8.6738 4.3420 24 6 -0.7501 -7.3845 3.9447 25 9 -0.7597 -6.3800 4.8481 26 6 0.8523 -3.0029 1.3906 27 1 -0.4850 0.8401 0.0004 28 1 -0.3716 -1.7542 -0.9561 29 1 3.1373 -3.5665 0.4231 30 1 2.1877 -4.2512 -0.9647 31 1 -0.5396 -5.0607 2.6360 32 1 -0.1604 -7.9463 0.6596 33 1 -1.0265 -12.4866 0.8129 34 1 -1.3105 -10.7059 3.7367 35 1 -1.3161 -8.8730 5.3731 36 1 -0.2090 -2.8808 1.6072 37 1 1.4919 -2.6258 2.1886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = -135.308784 kcal Electronic energy + Delta-G solvation = -26835.791612 eV Core-core repulsion = 22494.684528 eV Total energy + Delta-G solvation = -4341.107084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.16106 -40.75550 -40.11153 -38.89608 -37.60491 -36.24470 -34.64200 -34.11326 -32.24880 -31.17980 -30.35770 -28.21340 -25.43806 -25.21281 -24.86817 -23.20431 -21.51262 -20.68737 -19.18692 -18.50661 -18.16889 -17.70050 -17.43253 -17.01976 -16.50505 -16.06081 -15.87048 -15.66879 -15.25181 -15.11822 -14.72693 -14.27202 -14.10012 -13.92966 -13.60819 -13.37071 -12.89949 -12.78679 -12.69292 -12.55294 -12.09445 -11.76746 -11.69219 -11.61452 -11.12111 -11.07341 -10.83300 -10.54763 -10.52215 -10.32625 -9.95979 -9.39373 -9.14954 -8.84159 -8.54895 -8.36850 -7.87621 -6.46408 -4.56941 0.31943 0.99214 2.24474 2.57733 2.83067 3.11621 3.19962 3.22268 3.30073 3.60986 3.87180 4.08820 4.18338 4.42404 4.75391 4.77665 4.80913 4.98301 5.30824 5.47316 5.55114 5.75037 5.80003 5.90743 6.01022 6.09986 6.21451 6.27047 6.27910 6.34325 6.45507 6.57357 6.74471 7.00419 7.34470 7.57321 7.70675 7.73719 8.43100 8.47869 8.81883 9.14856 9.42872 10.60411 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.002882 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.635684 B = 9713.309292 C =10524.635757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.242 3.758 10 O -0.571 6.571 11 C 0.129 3.871 12 N -0.648 5.648 13 C 0.729 3.271 14 O -0.586 6.586 15 N -0.684 5.684 16 C 0.141 3.859 17 C -0.033 4.033 18 C -0.122 4.122 19 C 0.528 3.472 20 O -0.502 6.502 21 O -0.514 6.514 22 C -0.058 4.058 23 C -0.148 4.148 24 C 0.101 3.899 25 F -0.130 7.130 26 C 0.070 3.930 27 H 0.274 0.726 28 H 0.394 0.606 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.412 0.588 32 H 0.170 0.830 33 H 0.414 0.586 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.062 0.938 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -15.159 9.365 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.200 3.800 10 O -0.384 6.384 11 C 0.007 3.993 12 N -0.384 5.384 13 C 0.433 3.567 14 O -0.465 6.465 15 N -0.331 5.331 16 C 0.043 3.957 17 C -0.054 4.054 18 C -0.124 4.124 19 C 0.372 3.628 20 O -0.390 6.390 21 O -0.326 6.326 22 C -0.078 4.078 23 C -0.167 4.167 24 C 0.078 3.922 25 F -0.108 7.108 26 C -0.053 4.053 27 H 0.085 0.915 28 H 0.251 0.749 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.248 0.752 32 H 0.187 0.813 33 H 0.273 0.727 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.081 0.919 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.848 -15.976 8.826 18.653 hybrid contribution -0.106 1.568 0.302 1.601 sum -3.953 -14.408 9.128 17.508 Atomic orbital electron populations 1.69257 1.06227 1.28304 1.50053 1.25087 0.95044 1.00011 0.92920 0.86285 0.79717 0.81730 0.78537 1.20183 1.20906 1.19508 1.21406 0.93975 0.89594 1.52197 0.90803 1.19475 0.85488 0.91030 0.84045 1.86056 1.45084 1.48400 1.58845 1.23295 0.93238 0.91235 0.91578 1.48814 1.44265 1.02935 1.42380 1.15193 0.79314 0.82499 0.79651 1.90885 1.60023 1.39937 1.55679 1.42471 1.42665 1.05843 1.42152 1.17307 1.01757 0.86065 0.90585 1.21475 0.92894 0.89320 1.01668 1.18887 1.08645 0.91688 0.93182 1.20686 0.73089 0.82082 0.86950 1.90957 1.44225 1.83968 1.19815 1.84529 1.82497 1.18820 1.46788 1.21207 0.95852 0.99708 0.90994 1.20902 1.04127 0.90141 1.01519 1.17811 1.04013 0.85751 0.84627 1.91521 1.93977 1.59314 1.65985 1.24229 1.00304 0.77690 1.03113 0.91514 0.74922 0.89526 0.91229 0.75164 0.81310 0.72691 0.83443 0.83456 0.91928 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.13 11.01 55.43 0.61 -21.52 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 3 Si 0.91 18.95 29.54 -169.99 -5.02 13.93 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.53 -12.94 8.70 -34.44 -0.30 -13.24 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.24 5.62 1.57 -91.40 -0.14 5.48 16 10 O -0.57 -14.42 13.53 -35.23 -0.48 -14.89 16 11 C 0.13 2.74 8.04 -8.52 -0.07 2.68 16 12 N -0.65 -13.41 3.69 -191.20 -0.71 -14.12 16 13 C 0.73 14.85 8.64 -86.92 -0.75 14.10 16 14 O -0.59 -13.37 14.53 5.29 0.08 -13.30 16 15 N -0.68 -11.37 5.23 -14.20 -0.07 -11.44 16 16 C 0.14 2.11 6.31 -83.63 -0.53 1.58 16 17 C -0.03 -0.51 8.24 -38.99 -0.32 -0.83 16 18 C -0.12 -1.53 5.87 -105.00 -0.62 -2.15 16 19 C 0.53 6.57 8.27 34.55 0.29 6.85 16 20 O -0.50 -8.15 17.13 -19.26 -0.33 -8.48 16 21 O -0.51 -4.16 12.67 -40.57 -0.51 -4.67 16 22 C -0.06 -0.55 9.61 -39.16 -0.38 -0.93 16 23 C -0.15 -1.39 10.00 -39.61 -0.40 -1.79 16 24 C 0.10 1.24 7.31 -39.11 -0.29 0.95 16 25 F -0.13 -1.62 16.94 2.25 0.04 -1.59 16 26 C 0.07 1.43 7.70 -8.66 -0.07 1.36 16 27 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 28 H 0.39 10.06 6.32 45.56 0.29 10.35 16 29 H 0.09 1.68 8.10 -51.93 -0.42 1.25 16 30 H 0.07 1.52 8.14 -51.92 -0.42 1.10 16 31 H 0.41 6.15 8.37 -40.82 -0.34 5.81 16 32 H 0.17 3.17 5.78 -52.48 -0.30 2.87 16 33 H 0.41 1.54 9.11 45.56 0.42 1.95 16 34 H 0.15 0.98 7.60 -52.48 -0.40 0.58 16 35 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 37 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -30.46 335.09 -7.01 -37.47 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -1.99 Total: 17.84 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: -3.66 Total: 15.71 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.17 Total: -47.08 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.24 Total: -41.34 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.46 -7.01 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.842 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds