Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99659 * 2 1 4 4 H 1.48497 * 109.47298 * 269.99999 * 3 2 1 5 5 H 1.48491 * 109.47409 * 30.00633 * 3 2 1 6 6 H 1.48510 * 109.46584 * 150.00492 * 3 2 1 7 7 C 1.37876 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99577 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99943 * 359.97438 * 7 2 1 10 10 O 1.42897 * 113.28329 * 46.93405 * 9 7 2 11 11 C 1.53497 * 114.20613 * 180.02562 * 9 7 2 12 12 N 1.47065 * 87.98929 * 139.85077 * 11 9 7 13 13 C 1.34770 * 136.06177 * 152.83976 * 12 11 9 14 14 O 1.21591 * 119.99812 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00363 * 180.02562 * 13 12 11 16 16 C 1.40113 * 120.00166 * 184.47333 * 15 13 12 17 17 C 1.38437 * 120.00613 * 325.32451 * 16 15 13 18 18 C 1.39626 * 119.80290 * 179.97438 * 17 16 15 19 19 C 1.47609 * 120.10078 * 180.02562 * 18 17 16 20 20 O 1.21493 * 119.99577 * 359.97378 * 19 18 17 21 21 O 1.34728 * 120.00495 * 179.97438 * 19 18 17 22 22 C 1.39718 * 119.80699 * 359.97438 * 18 17 16 23 23 C 1.37874 * 120.00589 * 0.02562 * 22 18 17 24 24 C 1.38514 * 120.20147 * 0.25432 * 23 22 18 25 25 F 1.35103 * 119.90750 * 179.74771 * 24 23 22 26 26 C 1.47066 * 87.88104 * 333.10348 * 12 11 9 27 27 H 0.97001 * 119.99831 * 359.97438 * 1 2 3 28 28 H 0.96694 * 114.00066 * 313.06392 * 10 9 7 29 29 H 1.09001 * 113.46786 * 25.06810 * 11 9 7 30 30 H 1.09008 * 113.46489 * 254.62918 * 11 9 7 31 31 H 0.96999 * 119.99687 * 4.47782 * 15 13 12 32 32 H 1.08005 * 120.09635 * 0.02562 * 17 16 15 33 33 H 0.96702 * 117.00140 * 179.97438 * 21 19 18 34 34 H 1.08005 * 119.99611 * 180.02562 * 22 18 17 35 35 H 1.07999 * 119.89899 * 179.97438 * 23 22 18 36 36 H 1.09007 * 113.46851 * 141.68334 * 26 12 11 37 37 H 1.09002 * 113.46594 * 272.11764 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1920 -2.5399 -0.9591 11 6 2.1488 -3.7441 -0.0005 12 7 1.2074 -4.3593 0.9471 13 6 0.8311 -5.6138 1.2650 14 8 1.3281 -6.5621 0.6886 15 7 -0.0960 -5.8173 2.2218 16 6 -0.4191 -7.1218 2.6181 17 6 -0.4138 -8.1488 1.6898 18 6 -0.7359 -9.4472 2.0895 19 6 -0.7318 -10.5473 1.1053 20 8 -0.4482 -10.3234 -0.0547 21 8 -1.0424 -11.7996 1.4932 22 6 -1.0612 -9.7025 3.4241 23 6 -1.0640 -8.6738 4.3420 24 6 -0.7501 -7.3845 3.9447 25 9 -0.7597 -6.3800 4.8481 26 6 0.8523 -3.0029 1.3906 27 1 -0.4850 0.8401 0.0004 28 1 -0.3716 -1.7542 -0.9561 29 1 3.1373 -3.5665 0.4231 30 1 2.1877 -4.2512 -0.9647 31 1 -0.5396 -5.0607 2.6360 32 1 -0.1604 -7.9463 0.6596 33 1 -1.0265 -12.4866 0.8129 34 1 -1.3105 -10.7059 3.7367 35 1 -1.3161 -8.8730 5.3731 36 1 -0.2090 -2.8808 1.6072 37 1 1.4919 -2.6258 2.1886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = -158.579311 kcal Electronic energy + Delta-G solvation = -26836.800698 eV Core-core repulsion = 22494.684528 eV Total energy + Delta-G solvation = -4342.116170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.13813 -42.00533 -41.34706 -40.24266 -38.97223 -37.12906 -35.99032 -35.95795 -34.13885 -32.13412 -31.64830 -29.75780 -27.17548 -26.89724 -25.85751 -24.30329 -22.51295 -22.19895 -20.75620 -19.72454 -19.45416 -19.08140 -18.53248 -18.41063 -17.63607 -17.27728 -17.05980 -16.97791 -16.70546 -16.56445 -16.16489 -15.78007 -15.24946 -15.14361 -14.90212 -14.63823 -14.50019 -14.16953 -13.91435 -13.77864 -13.53983 -13.42485 -12.82225 -12.80264 -12.73735 -12.62626 -12.22686 -12.18675 -11.90540 -11.77068 -11.52145 -11.12832 -10.69180 -10.32457 -10.11716 -9.82719 -9.29597 -8.29126 -6.46122 -0.64667 0.01518 1.19430 1.30440 1.47328 1.51341 1.60007 1.86233 1.96172 2.39274 2.49759 2.65687 2.90363 2.94951 3.55792 3.67376 3.85615 3.95951 3.96420 4.08258 4.30064 4.40582 4.57156 4.61078 4.74827 4.77282 4.84566 4.86799 4.98101 5.09428 5.19202 5.19883 5.52630 5.65032 5.71555 5.86153 5.95628 6.60375 6.83897 6.92014 7.24316 7.29603 7.46979 8.77221 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.002882 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.635684 B = 9713.309292 C =10524.635757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.032 3.968 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.221 3.779 10 O -0.587 6.587 11 C 0.130 3.870 12 N -0.652 5.652 13 C 0.725 3.275 14 O -0.617 6.617 15 N -0.675 5.675 16 C 0.109 3.891 17 C -0.057 4.057 18 C -0.132 4.132 19 C 0.536 3.464 20 O -0.552 6.552 21 O -0.492 6.492 22 C -0.029 4.029 23 C -0.127 4.127 24 C 0.105 3.895 25 F -0.130 7.130 26 C 0.086 3.914 27 H 0.277 0.723 28 H 0.390 0.610 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.419 0.581 32 H 0.126 0.874 33 H 0.436 0.564 34 H 0.190 0.810 35 H 0.193 0.807 36 H 0.062 0.938 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 -16.505 12.282 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.168 4.168 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.179 3.821 10 O -0.400 6.400 11 C 0.007 3.993 12 N -0.388 5.388 13 C 0.429 3.571 14 O -0.498 6.498 15 N -0.323 5.323 16 C 0.013 3.987 17 C -0.078 4.078 18 C -0.134 4.134 19 C 0.381 3.619 20 O -0.444 6.444 21 O -0.306 6.306 22 C -0.048 4.048 23 C -0.145 4.145 24 C 0.083 3.917 25 F -0.108 7.108 26 C -0.037 4.037 27 H 0.087 0.913 28 H 0.246 0.754 29 H 0.125 0.875 30 H 0.073 0.927 31 H 0.256 0.744 32 H 0.144 0.856 33 H 0.298 0.702 34 H 0.207 0.793 35 H 0.210 0.790 36 H 0.081 0.919 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.344 -17.378 11.787 21.442 hybrid contribution -0.029 1.813 -0.561 1.898 sum -4.373 -15.564 11.226 19.682 Atomic orbital electron populations 1.69322 1.07193 1.29008 1.50283 1.25779 0.95774 1.02740 0.92555 0.85332 0.78717 0.78100 0.78148 1.20523 1.20649 1.18882 1.21634 0.94285 0.90269 1.52666 0.90487 1.19750 0.85541 0.91672 0.85098 1.86044 1.45689 1.48227 1.60013 1.23301 0.94085 0.90422 0.91508 1.48766 1.44379 1.03212 1.42437 1.15354 0.79775 0.81822 0.80117 1.90867 1.61319 1.40711 1.56947 1.42251 1.41728 1.07148 1.41200 1.17510 1.04170 0.85009 0.92025 1.21151 0.95277 0.91339 1.00029 1.18999 1.09009 0.90494 0.94921 1.20702 0.71951 0.83182 0.86048 1.90947 1.46706 1.84887 1.21873 1.84462 1.81244 1.17618 1.47248 1.21649 0.92646 1.01549 0.88917 1.21405 1.01455 0.88198 1.03463 1.17965 1.03458 0.86924 0.83341 1.91526 1.93941 1.59705 1.65649 1.24018 1.00520 0.77292 1.01885 0.91325 0.75449 0.87506 0.92673 0.74395 0.85625 0.70189 0.79304 0.79022 0.91927 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.44 11.01 21.45 0.24 -45.21 16 2 C 0.03 1.54 5.39 84.65 0.46 2.00 16 3 Si 0.97 38.55 29.54 68.60 2.03 40.57 16 4 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.55 -26.79 8.70 25.60 0.22 -26.57 16 8 H 0.08 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.22 10.47 1.57 -11.30 -0.02 10.45 16 10 O -0.59 -30.65 13.53 -148.98 -2.02 -32.67 16 11 C 0.13 5.66 8.04 83.17 0.67 6.33 16 12 N -0.65 -27.70 3.69 -877.57 -3.24 -30.94 16 13 C 0.73 30.73 8.64 179.06 1.55 32.28 16 14 O -0.62 -29.78 14.53 -4.00 -0.06 -29.84 16 15 N -0.68 -23.06 5.23 -317.10 -1.66 -24.72 16 16 C 0.11 3.28 6.31 38.10 0.24 3.52 16 17 C -0.06 -1.83 8.24 22.65 0.19 -1.65 16 18 C -0.13 -3.17 5.87 -20.11 -0.12 -3.29 16 19 C 0.54 12.87 8.27 70.30 0.58 13.45 16 20 O -0.55 -18.63 17.13 19.86 0.34 -18.29 16 21 O -0.49 -6.47 12.67 -56.38 -0.71 -7.18 16 22 C -0.03 -0.42 9.61 22.54 0.22 -0.20 16 23 C -0.13 -1.79 10.00 22.25 0.22 -1.57 16 24 C 0.11 2.36 7.31 22.57 0.17 2.53 16 25 F -0.13 -2.95 16.94 44.97 0.76 -2.19 16 26 C 0.09 3.55 7.70 83.08 0.64 4.19 16 27 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 28 H 0.39 20.56 6.32 -74.06 -0.47 20.09 16 29 H 0.11 4.16 8.10 -2.39 -0.02 4.14 16 30 H 0.05 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.42 12.70 8.37 -92.71 -0.78 11.92 16 32 H 0.13 5.19 5.78 -2.91 -0.02 5.17 16 33 H 0.44 2.01 9.11 -74.06 -0.67 1.33 16 34 H 0.19 1.27 7.60 -2.91 -0.02 1.25 16 35 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.10 3.71 8.10 -2.39 -0.02 3.69 16 Total: -1.00 -69.52 335.09 -0.04 -69.57 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.73 Total: 39.42 kcal Atomic # 6 Polarization: 36.46 SS G_CDS: 5.01 Total: 41.47 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -4.66 Total: -100.87 kcal Atomic # 8 Polarization: -85.52 SS G_CDS: -2.45 Total: -87.97 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.76 Total: -2.19 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Total: -69.52 -0.04 -69.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.013 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds