Wall clock time and date at job start Tue Mar 31 2020 13:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00111 * 2 1 4 4 H 1.48502 * 109.47355 * 240.00201 * 3 2 1 5 5 H 1.48504 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47292 * 119.99876 * 3 2 1 7 7 C 1.37878 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99968 * 174.58015 * 7 2 1 9 9 C 1.50700 * 119.99682 * 354.57961 * 7 2 1 10 10 C 1.52998 * 112.99773 * 296.31551 * 9 7 2 11 11 O 1.45198 * 109.47183 * 289.51237 * 10 9 7 12 12 C 1.34707 * 117.00196 * 183.41282 * 11 10 9 13 13 O 1.21473 * 119.99981 * 3.59868 * 12 11 10 14 14 C 1.47747 * 120.00084 * 183.60496 * 12 11 10 15 15 C 1.39734 * 120.06529 * 354.23517 * 14 12 11 16 16 C 1.38274 * 120.12658 * 179.97438 * 15 14 12 17 17 F 1.35096 * 119.87280 * 180.02562 * 16 15 14 18 18 C 1.38319 * 120.25313 * 0.02562 * 16 15 14 19 19 C 1.39691 * 120.12214 * 359.97438 * 18 16 15 20 20 C 1.47751 * 120.06485 * 180.02562 * 19 18 16 21 21 O 1.21464 * 120.00530 * 179.97438 * 20 19 18 22 22 O 1.34711 * 119.99594 * 0.02562 * 20 19 18 23 23 C 1.39342 * 120.06411 * 174.49251 * 14 12 11 24 24 C 1.54039 * 113.92768 * 68.25064 * 9 7 2 25 25 O 1.44175 * 85.51591 * 91.65802 * 24 9 7 26 26 C 1.44170 * 93.34297 * 24.19412 * 25 24 9 27 27 H 0.97003 * 119.99756 * 5.03025 * 1 2 3 28 28 H 1.09006 * 109.47074 * 169.51740 * 10 9 7 29 29 H 1.08995 * 109.47360 * 49.51277 * 10 9 7 30 30 H 1.07996 * 119.93533 * 359.97438 * 15 14 12 31 31 H 1.07998 * 119.93370 * 179.97438 * 18 16 15 32 32 H 0.96697 * 116.99972 * 179.97438 * 22 20 19 33 33 H 1.08001 * 120.12330 * 0.02562 * 23 14 12 34 34 H 1.08998 * 113.86079 * 205.80602 * 24 9 7 35 35 H 1.08994 * 113.86100 * 337.50815 * 24 9 7 36 36 H 1.09009 * 113.86606 * 221.65908 * 26 25 24 37 37 H 1.09000 * 113.86597 * 89.95410 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0809 -1.1961 -0.0878 9 6 1.2561 -2.4961 0.1244 10 6 0.5230 -2.6395 1.4596 11 8 1.4910 -2.8263 2.5256 12 6 1.0041 -3.0403 3.7633 13 8 -0.1944 -3.1353 3.9364 14 6 1.9279 -3.1593 4.9102 15 6 3.3090 -3.1709 4.6983 16 6 4.1748 -3.2817 5.7708 17 9 5.5092 -3.2919 5.5602 18 6 3.6798 -3.3823 7.0585 19 6 2.3009 -3.3718 7.2823 20 6 1.7736 -3.4787 8.6584 21 8 0.5745 -3.4690 8.8518 22 8 2.6228 -3.5858 9.6986 23 6 1.4235 -3.2657 6.2047 24 6 0.3880 -2.8368 -1.1016 25 8 1.5489 -3.5413 -1.5862 26 6 2.0897 -3.7321 -0.2635 27 1 -0.4850 0.8369 -0.0737 28 1 -0.1424 -3.5019 1.4180 29 1 -0.0605 -1.7393 1.6523 30 1 3.7011 -3.0931 3.6950 31 1 4.3606 -3.4690 7.8923 32 1 2.2309 -3.6528 10.5801 33 1 0.3566 -3.2618 6.3727 34 1 -0.4588 -3.4849 -0.8759 35 1 0.1152 -1.9699 -1.7033 36 1 3.1666 -3.5752 -0.2004 37 1 1.7624 -4.6535 0.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:12 Heat of formation + Delta-G solvation = -220.503967 kcal Electronic energy + Delta-G solvation = -26855.307866 eV Core-core repulsion = 22478.213690 eV Total energy + Delta-G solvation = -4377.094176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.05301 -41.90071 -41.39167 -40.85376 -39.41462 -37.44994 -37.17463 -34.94643 -33.28013 -31.97694 -31.71736 -27.55110 -27.15787 -26.47184 -26.20948 -25.00772 -22.70697 -21.96640 -20.91164 -19.59723 -19.13163 -18.61176 -18.15096 -17.53637 -17.47506 -17.37165 -17.03920 -16.94622 -16.73498 -16.71608 -16.54737 -16.18441 -16.13897 -15.80213 -14.65973 -14.63079 -14.40436 -14.08264 -13.87030 -13.57441 -13.44910 -13.16710 -13.11504 -12.83370 -12.66861 -12.64292 -12.35567 -12.06576 -11.89817 -11.83073 -11.46282 -11.25573 -10.94866 -10.67911 -10.58118 -10.23425 -10.14284 -8.18626 -6.29430 -0.87518 -0.49954 0.95759 1.42778 1.44051 1.44982 1.51385 1.58361 1.93126 2.37426 2.40068 2.81437 2.99603 3.21797 3.29887 3.58308 3.72200 3.72885 3.88772 4.19623 4.23364 4.34720 4.38573 4.45920 4.48033 4.58377 4.62201 4.74087 4.80255 4.92983 5.14915 5.21740 5.37274 5.47492 5.47933 5.49409 5.54882 5.73230 6.21675 6.63884 6.70985 6.87411 7.37425 8.86762 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.003396 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.040635 B = 8242.181084 C = 8406.638721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.020 3.980 10 C 0.093 3.907 11 O -0.334 6.334 12 C 0.499 3.501 13 O -0.536 6.536 14 C -0.109 4.109 15 C -0.056 4.056 16 C 0.084 3.916 17 F -0.125 7.125 18 C -0.039 4.039 19 C -0.113 4.113 20 C 0.544 3.456 21 O -0.539 6.539 22 O -0.494 6.494 23 C -0.007 4.007 24 C 0.054 3.946 25 O -0.403 6.403 26 C 0.041 3.959 27 H 0.265 0.735 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.164 0.836 31 H 0.191 0.809 32 H 0.440 0.560 33 H 0.146 0.854 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.663 -7.397 17.566 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.019 3.981 10 C 0.019 3.981 11 O -0.250 6.250 12 C 0.345 3.655 13 O -0.428 6.428 14 C -0.110 4.110 15 C -0.075 4.075 16 C 0.065 3.935 17 F -0.104 7.104 18 C -0.058 4.058 19 C -0.115 4.115 20 C 0.389 3.611 21 O -0.430 6.430 22 O -0.308 6.308 23 C -0.026 4.026 24 C -0.024 4.024 25 O -0.323 6.323 26 C -0.035 4.035 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.182 0.818 31 H 0.208 0.792 32 H 0.303 0.697 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.157 -7.336 17.036 20.263 hybrid contribution -0.471 1.080 0.180 1.192 sum 7.686 -6.257 17.216 19.865 Atomic orbital electron populations 1.69944 1.06913 1.28122 1.49764 1.25613 0.95640 1.02035 0.94185 0.85708 0.78526 0.79165 0.78936 1.19659 1.21193 1.19535 1.20856 0.93407 0.89592 1.50575 0.91947 1.21152 0.93233 0.94994 0.88708 1.23303 0.89813 0.99683 0.85296 1.86507 1.41646 1.80371 1.16434 1.21419 0.87157 0.72806 0.84155 1.90809 1.17889 1.48011 1.86080 1.18644 0.92348 1.09181 0.90869 1.21871 0.91454 0.92665 1.01465 1.17243 0.77925 1.04993 0.93336 1.91585 1.29200 1.94002 1.95597 1.21885 0.94834 0.92173 0.96903 1.18600 0.93239 1.09392 0.90223 1.20308 0.83502 0.71591 0.85736 1.90950 1.18110 1.47607 1.86342 1.84467 1.42157 1.84248 1.19937 1.21329 1.01586 0.90284 0.89412 1.23848 0.88610 0.93998 0.95901 1.89470 1.37560 1.78040 1.27183 1.24101 0.99911 0.97302 0.82193 0.92558 0.93166 0.92141 0.81850 0.79159 0.69673 0.83671 0.91321 0.90775 0.89418 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.86 11.26 21.45 0.24 -48.62 16 2 C 0.03 1.34 5.20 84.65 0.44 1.78 16 3 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.51 -25.98 8.27 25.60 0.21 -25.76 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.02 0.92 0.56 -52.23 -0.03 0.89 16 10 C 0.09 4.19 4.79 71.98 0.35 4.54 16 11 O -0.33 -13.52 9.27 -56.17 -0.52 -14.04 16 12 C 0.50 18.53 7.88 70.34 0.55 19.09 16 13 O -0.54 -22.75 16.08 19.92 0.32 -22.43 16 14 C -0.11 -3.06 5.87 -20.14 -0.12 -3.18 16 15 C -0.06 -1.30 9.59 22.64 0.22 -1.08 16 16 C 0.08 1.56 7.28 22.30 0.16 1.73 16 17 F -0.13 -2.37 17.26 44.97 0.78 -1.59 16 18 C -0.04 -0.58 9.59 22.64 0.22 -0.37 16 19 C -0.11 -2.15 5.87 -20.14 -0.12 -2.27 16 20 C 0.54 9.65 8.27 70.34 0.58 10.23 16 21 O -0.54 -13.62 17.12 19.95 0.34 -13.28 16 22 O -0.49 -4.44 12.67 -56.20 -0.71 -5.15 16 23 C -0.01 -0.19 9.13 22.81 0.21 0.02 16 24 C 0.05 2.45 7.94 72.28 0.57 3.03 16 25 O -0.40 -18.36 12.40 -148.98 -1.85 -20.20 16 26 C 0.04 1.67 8.19 72.27 0.59 2.26 16 27 H 0.27 13.80 8.32 -92.71 -0.77 13.03 16 28 H 0.05 2.14 7.85 -2.38 -0.02 2.12 16 29 H 0.06 3.14 6.75 -2.39 -0.02 3.12 16 30 H 0.16 3.85 7.61 -2.91 -0.02 3.83 16 31 H 0.19 1.58 7.60 -2.91 -0.02 1.56 16 32 H 0.44 0.07 9.11 -74.06 -0.67 -0.61 16 33 H 0.15 4.08 7.24 -2.91 -0.02 4.06 16 34 H 0.07 2.83 7.98 -2.39 -0.02 2.81 16 35 H 0.07 3.72 7.58 -2.39 -0.02 3.71 16 36 H 0.09 3.35 8.08 -2.38 -0.02 3.33 16 37 H 0.08 2.81 8.10 -2.39 -0.02 2.79 16 Total: -1.00 -66.35 339.39 4.94 -61.41 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.48 Total: 9.31 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 3.84 Total: 10.90 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.24 Total: -48.62 kcal Atomic # 8 Polarization: -72.68 SS G_CDS: -2.42 Total: -75.10 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.78 Total: -1.59 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -66.35 4.94 -61.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.095 kcal (2) G-P(sol) polarization free energy of solvation -66.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds