Wall clock time and date at job start Tue Mar 31 2020 13:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47417 * 269.99943 * 3 2 1 5 5 H 1.48501 * 109.47406 * 30.00059 * 3 2 1 6 6 H 1.48499 * 109.47001 * 150.00141 * 3 2 1 7 7 C 1.37873 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99879 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99945 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00382 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00552 * 180.02562 * 11 10 9 14 14 O 1.42897 * 109.47449 * 180.02562 * 13 11 10 15 15 C 1.35915 * 117.00187 * 180.02562 * 14 13 11 16 16 C 1.38861 * 119.97725 * 359.97349 * 15 14 13 17 17 C 1.38256 * 120.24748 * 180.02562 * 16 15 14 18 18 C 1.37995 * 120.20766 * 359.71985 * 17 16 15 19 19 C 1.39609 * 119.96343 * 0.57838 * 18 17 16 20 20 C 1.47746 * 120.12751 * 179.69551 * 19 18 17 21 21 O 1.21462 * 120.00102 * 179.72539 * 20 19 18 22 22 O 1.34713 * 119.99379 * 359.72376 * 20 19 18 23 23 C 1.38438 * 119.98186 * 179.97438 * 15 14 13 24 24 N 1.48018 * 120.10787 * 359.97220 * 23 15 14 25 25 O 1.21794 * 120.00079 * 270.02446 * 24 23 15 26 26 O 1.21801 * 119.99541 * 90.02548 * 24 23 15 27 27 H 0.97001 * 119.99412 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47383 * 59.99837 * 9 7 2 29 29 H 1.09005 * 109.46999 * 299.99336 * 9 7 2 30 30 H 0.97006 * 119.99756 * 0.02562 * 10 9 7 31 31 H 1.09001 * 109.47414 * 59.99645 * 13 11 10 32 32 H 1.09005 * 109.46566 * 299.99837 * 13 11 10 33 33 H 1.07997 * 119.88251 * 0.02562 * 16 15 14 34 34 H 1.07991 * 119.89519 * 179.97438 * 17 16 15 35 35 H 1.08007 * 120.02003 * 180.27643 * 18 17 16 36 36 H 0.96702 * 116.99618 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 5.3249 -2.8216 -0.0001 12 8 6.1131 -1.8998 -0.0006 13 6 5.8273 -4.2424 -0.0008 14 8 7.2562 -4.2424 -0.0002 15 6 7.8733 -5.4534 -0.0012 16 6 7.1166 -6.6177 -0.0023 17 6 7.7384 -7.8525 -0.0029 18 6 9.1158 -7.9362 -0.0082 19 6 9.8852 -6.7713 -0.0008 20 6 11.3602 -6.8567 0.0004 21 8 12.0273 -5.8417 0.0018 22 8 11.9650 -8.0604 -0.0001 23 6 9.2558 -5.5254 -0.0012 24 7 10.0639 -4.2853 -0.0006 25 8 10.3960 -3.7743 -1.0552 26 8 10.3967 -3.7758 1.0545 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6808 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.3695 -3.3126 -0.0009 31 1 5.4640 -4.7558 -0.8911 32 1 5.4639 -4.7566 0.8889 33 1 6.0382 -6.5586 -0.0027 34 1 7.1444 -8.7543 -0.0033 35 1 9.5985 -8.9024 -0.0131 36 1 12.9320 -8.0658 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068148.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:05 Heat of formation + Delta-G solvation = -154.300002 kcal Electronic energy + Delta-G solvation = -26525.262336 eV Core-core repulsion = 22170.958941 eV Total energy + Delta-G solvation = -4354.303395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.41748 -41.86578 -41.44408 -40.42000 -38.73188 -37.63450 -37.47282 -36.28813 -34.50664 -33.43348 -32.36320 -30.94992 -28.83934 -27.94185 -25.93029 -24.31411 -23.70090 -22.83807 -21.77076 -20.71614 -19.92682 -19.83566 -19.38066 -18.99507 -18.57315 -17.98292 -17.82926 -17.77079 -17.08687 -16.91097 -16.63023 -16.32448 -16.05003 -15.86394 -15.24637 -14.88436 -14.51969 -14.42059 -14.19029 -13.89689 -13.39153 -13.30349 -13.11008 -12.93854 -12.87310 -12.77011 -12.46110 -12.39110 -12.31494 -12.09779 -11.98262 -11.68726 -11.05966 -10.94829 -10.84304 -10.10991 -9.96952 -8.42828 -6.49236 -1.11529 -0.69439 -0.35525 0.22568 1.04646 1.06291 1.29798 1.34203 1.44474 1.46940 1.63342 2.10833 2.25169 2.48774 2.92989 3.20994 3.24928 3.39881 3.62208 3.67183 3.80578 3.92730 3.96703 4.17982 4.53246 4.72403 4.76887 4.89185 4.95833 5.05315 5.15027 5.20547 5.21578 5.35476 5.67277 6.04443 6.27158 6.50477 6.56078 6.67577 7.10494 7.26794 8.71212 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.002557 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.669856 B =10948.325791 C =11872.306409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.031 3.969 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.230 3.770 10 N -0.690 5.690 11 C 0.495 3.505 12 O -0.591 6.591 13 C 0.046 3.954 14 O -0.327 6.327 15 C 0.154 3.846 16 C -0.146 4.146 17 C -0.026 4.026 18 C -0.058 4.058 19 C -0.075 4.075 20 C 0.524 3.476 21 O -0.546 6.546 22 O -0.477 6.477 23 C -0.052 4.052 24 N 0.039 4.961 25 O -0.164 6.164 26 O -0.165 6.165 27 H 0.273 0.727 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.418 0.582 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.202 0.798 34 H 0.216 0.784 35 H 0.200 0.800 36 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.537 -28.928 -0.037 32.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.170 4.170 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.088 0.912 9 C 0.107 3.893 10 N -0.342 5.342 11 C 0.281 3.719 12 O -0.471 6.471 13 C -0.031 4.031 14 O -0.239 6.239 15 C 0.106 3.894 16 C -0.165 4.165 17 C -0.043 4.043 18 C -0.076 4.076 19 C -0.077 4.077 20 C 0.368 3.632 21 O -0.438 6.438 22 O -0.292 6.292 23 C -0.133 4.133 24 N 0.566 4.434 25 O -0.386 6.386 26 O -0.387 6.387 27 H 0.082 0.918 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.255 0.745 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.219 0.781 34 H 0.232 0.768 35 H 0.218 0.782 36 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 15.331 -28.336 -0.034 32.218 hybrid contribution 0.905 1.843 -0.007 2.053 sum 16.236 -26.494 -0.041 31.073 Atomic orbital electron populations 1.69952 1.07421 1.28576 1.50522 1.25482 0.95461 1.02264 0.93748 0.85995 0.79239 0.80112 0.79376 1.19175 1.19766 1.18996 1.21224 0.89409 0.94855 1.52582 0.91181 1.19155 0.93756 0.80624 0.95795 1.45751 1.05624 1.10252 1.72540 1.20830 0.82790 0.91529 0.76732 1.90752 1.56634 1.48223 1.51504 1.22970 0.76800 0.94447 1.08839 1.86214 1.23282 1.26647 1.87771 1.18682 0.87897 0.87474 0.95308 1.22272 1.03304 0.89425 1.01476 1.22062 0.93723 0.99065 0.89467 1.22049 0.94418 0.96880 0.94292 1.18684 0.90711 0.91343 1.06943 1.20705 0.88753 0.81810 0.71921 1.91065 1.67274 1.38430 1.47040 1.84415 1.31024 1.29294 1.84425 1.20490 0.89305 0.83631 1.19873 1.43504 0.98311 1.01832 0.99708 1.94497 1.57951 1.65159 1.21014 1.94500 1.57948 1.65272 1.20942 0.91793 0.97049 0.97137 0.74477 0.83343 0.83374 0.78075 0.76756 0.78249 0.69380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.62 13.96 21.45 0.30 -53.32 16 2 C 0.03 1.73 5.47 84.65 0.46 2.19 16 3 Si 0.93 43.80 27.47 68.60 1.88 45.68 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -12.66 6.54 99.48 0.65 -12.01 16 7 C -0.54 -28.46 9.83 25.60 0.25 -28.20 16 8 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 9 C 0.23 10.89 4.50 85.63 0.38 11.28 16 10 N -0.69 -24.58 5.55 -466.79 -2.59 -27.17 16 11 C 0.50 17.37 7.91 87.66 0.69 18.06 16 12 O -0.59 -28.53 16.50 15.99 0.26 -28.26 16 13 C 0.05 0.91 5.22 71.23 0.37 1.28 16 14 O -0.33 -9.38 9.42 -73.55 -0.69 -10.07 16 15 C 0.15 3.22 6.68 22.47 0.15 3.37 16 16 C -0.15 -0.96 9.03 22.42 0.20 -0.76 16 17 C -0.03 -0.01 10.03 22.22 0.22 0.21 16 18 C -0.06 -0.30 9.61 22.54 0.22 -0.08 16 19 C -0.07 -1.33 5.87 -20.11 -0.12 -1.45 16 20 C 0.52 10.43 8.27 70.34 0.58 11.01 16 21 O -0.55 -16.89 15.24 26.27 0.40 -16.49 16 22 O -0.48 -4.03 12.68 -56.23 -0.71 -4.74 16 23 C -0.05 -1.37 6.18 36.75 0.23 -1.15 16 24 N 0.04 1.50 2.28 -45.58 -0.10 1.40 16 25 O -0.16 -6.86 18.93 22.47 0.43 -6.43 16 26 O -0.16 -6.88 18.92 22.51 0.43 -6.46 16 27 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 29 H 0.01 0.54 7.57 -2.38 -0.02 0.52 16 30 H 0.42 11.45 8.32 -92.70 -0.77 10.67 16 31 H 0.15 1.51 7.66 -2.39 -0.02 1.50 16 32 H 0.15 1.52 7.66 -2.38 -0.02 1.50 16 33 H 0.20 -0.33 6.28 -2.91 -0.02 -0.35 16 34 H 0.22 -2.16 8.06 -2.91 -0.02 -2.18 16 35 H 0.20 -0.43 7.61 -2.91 -0.02 -0.45 16 36 H 0.44 0.24 9.11 -74.06 -0.67 -0.43 16 Total: -1.00 -99.18 335.89 2.94 -96.25 By element: Atomic # 1 Polarization: -5.84 SS G_CDS: -0.31 Total: -6.15 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 3.65 Total: 15.76 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.39 Total: -79.09 kcal Atomic # 8 Polarization: -72.56 SS G_CDS: 0.11 Total: -72.45 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -99.18 2.94 -96.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068148.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.052 kcal (2) G-P(sol) polarization free energy of solvation -99.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds