Wall clock time and date at job start Tue Mar 31 2020 13:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29312 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47106 * 240.00265 * 3 2 1 5 5 H 1.48496 * 109.47235 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47097 * 120.00664 * 3 2 1 7 7 C 1.46786 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99914 * 166.23042 * 7 2 1 9 9 N 1.33325 * 120.00095 * 346.22545 * 7 2 1 10 10 C 1.46500 * 120.00237 * 316.96639 * 9 7 2 11 11 C 1.52995 * 109.47112 * 269.23837 * 10 9 7 12 12 C 1.50695 * 109.47339 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99957 * 0.02562 * 12 11 10 14 14 O 1.34232 * 120.00230 * 180.02562 * 12 11 10 15 15 C 1.34775 * 119.99820 * 136.96477 * 9 7 2 16 16 O 1.21473 * 120.00186 * 184.42771 * 15 9 7 17 17 C 1.47707 * 120.00348 * 4.42842 * 15 9 7 18 18 C 1.39700 * 120.12462 * 325.15519 * 17 15 9 19 19 C 1.37933 * 119.95998 * 179.97438 * 18 17 15 20 20 C 1.38312 * 120.21512 * 0.25745 * 19 18 17 21 21 N 1.48016 * 119.87416 * 179.74589 * 20 19 18 22 22 O 1.31705 * 119.99891 * 359.97438 * 21 20 19 23 23 O 1.31695 * 119.99907 * 179.97438 * 21 20 19 24 24 C 1.38834 * 120.25160 * 359.48407 * 20 19 18 25 25 O 1.35913 * 119.97966 * 180.25889 * 24 20 19 26 26 C 1.38467 * 120.03892 * 0.51360 * 24 20 19 27 27 H 0.97004 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47098 * 29.23944 * 10 9 7 29 29 H 1.08995 * 109.47289 * 149.24167 * 10 9 7 30 30 H 1.09003 * 109.47226 * 300.00028 * 11 10 9 31 31 H 1.09007 * 109.47102 * 59.99807 * 11 10 9 32 32 H 0.96705 * 117.00009 * 179.97438 * 14 12 11 33 33 H 1.08003 * 120.01699 * 359.95272 * 18 17 15 34 34 H 1.07997 * 119.89276 * 179.97438 * 19 18 17 35 35 H 0.96699 * 113.99484 * 270.25352 * 25 24 20 36 36 H 1.08004 * 120.10389 * 179.76287 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2271 1.6177 0.0000 4 1 3.0808 1.6964 -1.2125 5 1 1.2622 2.7464 0.0006 6 1 3.0810 1.6963 1.2124 7 6 2.0270 -1.2712 -0.0006 8 1 3.0837 -1.2846 -0.2232 9 7 1.3891 -2.4094 0.2738 10 6 0.4256 -2.4617 1.3762 11 6 1.1444 -2.8726 2.6627 12 6 0.1535 -2.9258 3.7968 13 8 -1.0086 -2.6626 3.5965 14 8 0.5618 -3.2656 5.0295 15 6 1.6307 -3.5118 -0.4629 16 8 0.9920 -4.5261 -0.2658 17 6 2.6720 -3.4867 -1.5102 18 6 2.8950 -2.3224 -2.2494 19 6 3.8687 -2.3026 -3.2262 20 6 4.6225 -3.4340 -3.4807 21 7 5.6615 -3.4060 -4.5345 22 8 5.8665 -2.3053 -5.2281 23 8 6.3811 -4.4817 -4.7784 24 6 4.4120 -4.5942 -2.7477 25 8 5.1595 -5.7011 -2.9988 26 6 3.4373 -4.6257 -1.7647 27 1 -0.4850 0.8401 0.0004 28 1 -0.0265 -1.4790 1.5105 29 1 -0.3512 -3.1906 1.1454 30 1 1.5966 -3.8553 2.5284 31 1 1.9214 -2.1436 2.8935 32 1 -0.1102 -3.2856 5.7247 33 1 2.3051 -1.4386 -2.0564 34 1 4.0399 -1.4021 -3.7973 35 1 4.7817 -6.2870 -3.6689 36 1 3.2701 -5.5289 -1.1965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:56 Heat of formation + Delta-G solvation = -122.843077 kcal Electronic energy + Delta-G solvation = -27206.170691 eV Core-core repulsion = 22853.231371 eV Total energy + Delta-G solvation = -4352.939320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89887 -41.30016 -40.52577 -39.27378 -37.88572 -37.28742 -36.94839 -35.44729 -34.20565 -33.33770 -32.31396 -31.20864 -28.16483 -26.93550 -25.84201 -24.03290 -23.74315 -22.14423 -21.41981 -20.29559 -19.57480 -19.24429 -19.22405 -18.62324 -17.78737 -17.68107 -17.12807 -17.00844 -16.89769 -16.48142 -16.23552 -15.85372 -15.59219 -15.33585 -15.04479 -14.37902 -14.23775 -14.14779 -13.78582 -13.49259 -13.16583 -13.06735 -12.82694 -12.70356 -12.56640 -12.50635 -12.39991 -12.14229 -11.98499 -11.91271 -11.84298 -11.67449 -11.14432 -10.75038 -10.53549 -10.12121 -9.73479 -8.50231 -6.06681 -1.89134 -0.18994 -0.11197 0.04570 1.18317 1.41463 1.52270 1.58175 1.66011 1.96892 2.25831 2.42401 2.55053 2.87513 2.88927 3.31598 3.66797 3.82377 3.87454 3.95152 4.09844 4.12178 4.44304 4.50747 4.59638 4.63896 4.71006 4.87076 4.96512 5.13939 5.19526 5.31974 5.40344 5.58787 5.64062 5.77991 6.26881 6.45614 6.78972 6.99213 7.36410 7.89704 8.45216 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.004124 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.656859 B = 6788.625104 C = 8354.641190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.032 3.968 3 Si 0.973 3.027 4 H -0.250 1.250 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.410 4.410 8 H 0.112 0.888 9 N -0.395 5.395 10 C 0.121 3.879 11 C -0.118 4.118 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.508 6.508 15 C 0.472 3.528 16 O -0.624 6.624 17 C -0.019 4.019 18 C -0.080 4.080 19 C -0.044 4.044 20 C -0.047 4.047 21 N -0.006 5.006 22 O -0.219 6.219 23 O -0.168 6.168 24 C 0.188 3.812 25 O -0.477 6.477 26 C -0.114 4.114 27 H 0.289 0.711 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.427 0.573 33 H 0.179 0.821 34 H 0.174 0.826 35 H 0.422 0.578 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 -2.054 1.892 5.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.183 4.183 3 Si 0.795 3.205 4 H -0.173 1.173 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.538 4.538 8 H 0.129 0.871 9 N -0.107 5.107 10 C -0.002 4.002 11 C -0.156 4.156 12 C 0.338 3.662 13 O -0.440 6.440 14 O -0.322 6.322 15 C 0.264 3.736 16 O -0.513 6.513 17 C -0.023 4.023 18 C -0.099 4.099 19 C -0.063 4.063 20 C -0.135 4.135 21 N 0.467 4.533 22 O -0.401 6.401 23 O -0.365 6.365 24 C 0.140 3.860 25 O -0.292 6.292 26 C -0.134 4.134 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.289 0.711 33 H 0.196 0.804 34 H 0.191 0.809 35 H 0.285 0.715 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.974 -2.038 2.489 5.113 hybrid contribution -0.464 0.524 -0.099 0.707 sum 3.510 -1.513 2.390 4.508 Atomic orbital electron populations 1.68927 1.09483 1.31073 1.37386 1.27800 0.94949 1.02742 0.92847 0.85294 0.78576 0.76075 0.80600 1.17338 1.20918 1.18831 1.20564 0.94182 0.83311 1.55722 0.87086 1.42291 1.35713 1.08982 1.23714 1.21163 0.91209 1.03164 0.84691 1.21603 0.97942 1.05645 0.90427 1.23358 0.87964 0.71087 0.83781 1.90714 1.21574 1.47077 1.84673 1.84504 1.47289 1.80971 1.19399 1.18600 0.86471 0.85380 0.83171 1.90624 1.53912 1.34749 1.72057 1.20323 0.93514 0.93748 0.94687 1.22228 0.96101 0.99683 0.91859 1.21208 0.92268 0.97034 0.95822 1.21266 0.96916 0.99855 0.95509 1.50474 1.00465 1.01810 1.00600 1.96256 1.76518 1.17477 1.49863 1.96241 1.45824 1.20166 1.74225 1.17854 0.89598 0.86256 0.92246 1.84801 1.47823 1.32582 1.63964 1.21524 0.93398 1.00024 0.98500 0.89900 0.88599 0.93722 0.87738 0.86067 0.71105 0.80378 0.80912 0.71467 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -37.26 11.49 23.26 0.27 -36.99 16 2 C 0.03 1.30 5.21 87.30 0.45 1.75 16 3 Si 0.97 31.67 29.66 68.60 2.03 33.70 16 4 H -0.25 -7.65 7.11 99.48 0.71 -6.94 16 5 H -0.28 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 7 C -0.41 -16.43 6.29 86.70 0.55 -15.89 16 8 H 0.11 4.16 6.49 -2.91 -0.02 4.14 16 9 N -0.39 -16.65 2.43 -634.11 -1.54 -18.19 16 10 C 0.12 5.14 4.31 86.38 0.37 5.51 16 11 C -0.12 -3.97 6.13 29.85 0.18 -3.79 16 12 C 0.49 15.76 8.33 71.23 0.59 16.36 16 13 O -0.55 -21.38 16.74 21.97 0.37 -21.01 16 14 O -0.51 -11.70 13.42 -51.43 -0.69 -12.39 16 15 C 0.47 19.87 7.36 86.75 0.64 20.50 16 16 O -0.62 -29.52 16.38 -3.63 -0.06 -29.58 16 17 C -0.02 -0.65 5.45 -20.10 -0.11 -0.76 16 18 C -0.08 -2.50 7.80 22.55 0.18 -2.33 16 19 C -0.04 -1.24 9.56 22.21 0.21 -1.02 16 20 C -0.05 -1.38 6.90 36.54 0.25 -1.13 16 21 N -0.01 -0.19 4.98 -46.08 -0.23 -0.42 16 22 O -0.22 -7.51 19.14 3.51 0.07 -7.44 16 23 O -0.17 -5.53 17.86 10.87 0.19 -5.34 16 24 C 0.19 5.20 6.68 22.47 0.15 5.35 16 25 O -0.48 -11.43 11.39 -71.31 -0.81 -12.25 16 26 C -0.11 -3.39 9.55 22.65 0.22 -3.18 16 27 H 0.29 12.07 8.26 -92.71 -0.77 11.31 16 28 H 0.10 4.42 5.59 -2.39 -0.01 4.41 16 29 H 0.04 2.11 7.34 -2.39 -0.02 2.09 16 30 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.12 3.74 8.14 -2.38 -0.02 3.72 16 32 H 0.43 5.67 9.10 -74.05 -0.67 4.99 16 33 H 0.18 6.01 5.66 -2.91 -0.02 5.99 16 34 H 0.17 4.23 7.56 -2.91 -0.02 4.21 16 35 H 0.42 6.20 9.06 -74.06 -0.67 5.53 16 36 H 0.16 4.57 8.00 -2.91 -0.02 4.55 16 Total: -1.00 -60.84 331.75 3.14 -57.70 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.14 Total: 30.82 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 3.68 Total: 21.38 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -1.50 Total: -55.59 kcal Atomic # 8 Polarization: -87.07 SS G_CDS: -0.93 Total: -88.00 kcal Atomic # 14 Polarization: 31.67 SS G_CDS: 2.03 Total: 33.70 kcal Total: -60.84 3.14 -57.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.144 kcal (2) G-P(sol) polarization free energy of solvation -60.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds