Wall clock time and date at job start Tue Mar 31 2020 13:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29309 * 1 3 3 Si 1.86797 * 119.99840 * 2 1 4 4 H 1.48503 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47360 * 299.99921 * 3 2 1 6 6 H 1.48502 * 109.47253 * 60.00406 * 3 2 1 7 7 C 1.46791 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99983 * 159.55562 * 7 2 1 9 9 N 1.33310 * 120.00113 * 339.55100 * 7 2 1 10 10 C 1.46502 * 119.99869 * 135.18027 * 9 7 2 11 11 C 1.52997 * 109.47445 * 282.35863 * 10 9 7 12 12 C 1.50696 * 109.46973 * 180.02562 * 11 10 9 13 13 O 1.20831 * 120.00330 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00121 * 180.02562 * 12 11 10 15 15 C 1.34776 * 119.99780 * 315.19153 * 9 7 2 16 16 O 1.21512 * 120.00345 * 7.11129 * 15 9 7 17 17 C 1.47365 * 119.99671 * 187.12348 * 15 9 7 18 18 C 1.39806 * 120.20118 * 324.35413 * 17 15 9 19 19 C 1.37744 * 119.89891 * 179.97438 * 18 17 15 20 20 C 1.38585 * 120.31728 * 359.97438 * 19 18 17 21 21 C 1.38063 * 120.40835 * 359.72354 * 20 19 18 22 22 N 1.48008 * 119.95472 * 180.27993 * 21 20 19 23 23 O 1.31698 * 120.00235 * 0.27692 * 22 21 20 24 24 O 1.31703 * 119.99915 * 180.27432 * 22 21 20 25 25 C 1.38703 * 120.09072 * 0.55208 * 21 20 19 26 26 O 1.35631 * 120.15800 * 179.71932 * 25 21 20 27 27 H 0.97000 * 120.00362 * 5.03703 * 1 2 3 28 28 H 1.09001 * 109.46618 * 42.36828 * 10 9 7 29 29 H 1.09002 * 109.46555 * 162.35922 * 10 9 7 30 30 H 1.08990 * 109.47527 * 300.00335 * 11 10 9 31 31 H 1.09004 * 109.46489 * 60.00663 * 11 10 9 32 32 H 0.96704 * 117.00209 * 180.02562 * 14 12 11 33 33 H 1.07998 * 120.05430 * 359.95501 * 18 17 15 34 34 H 1.08006 * 119.84100 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.79807 * 180.02562 * 20 19 18 36 36 H 0.96700 * 113.99796 * 269.73107 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2270 1.6177 0.0000 4 1 3.6871 1.3465 -0.0006 5 1 1.8683 2.3965 -1.2125 6 1 1.8684 2.3964 1.2126 7 6 2.0271 -1.2712 -0.0006 8 1 3.0561 -1.3005 -0.3273 9 7 1.4236 -2.3896 0.4023 10 6 1.5763 -3.6239 -0.3718 11 6 0.6740 -3.5669 -1.6061 12 6 0.8307 -4.8369 -2.4019 13 8 1.5869 -5.6991 -2.0213 14 8 0.1310 -5.0101 -3.5343 15 6 0.6729 -2.3845 1.5216 16 8 0.4395 -1.3372 2.0919 17 6 0.1353 -3.6491 2.0539 18 6 -0.2771 -4.6606 1.1813 19 6 -0.7781 -5.8404 1.6856 20 6 -0.8753 -6.0306 3.0549 21 6 -0.4660 -5.0428 3.9284 22 7 -0.5686 -5.2590 5.3890 23 8 -1.0448 -6.3951 5.8547 24 8 -0.1835 -4.3152 6.2230 25 6 0.0357 -3.8459 3.4390 26 8 0.4329 -2.8724 4.2958 27 1 -0.4851 0.8368 -0.0738 28 1 2.6149 -3.7299 -0.6854 29 1 1.2943 -4.4770 0.2454 30 1 -0.3644 -3.4609 -1.2925 31 1 0.9561 -2.7138 -2.2232 32 1 0.2646 -5.8412 -4.0102 33 1 -0.2032 -4.5171 0.1134 34 1 -1.0968 -6.6211 1.0106 35 1 -1.2690 -6.9591 3.4412 36 1 -0.2667 -2.2487 4.5339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072320.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:46 Heat of formation + Delta-G solvation = -72.661185 kcal Electronic energy + Delta-G solvation = -28044.356966 eV Core-core repulsion = 23693.593695 eV Total energy + Delta-G solvation = -4350.763270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.81054 -40.12883 -38.81273 -37.67543 -36.88687 -36.15430 -34.87819 -34.11514 -32.93045 -31.54476 -30.71014 -30.15961 -26.52513 -25.45108 -24.61056 -22.81559 -22.29725 -20.97448 -20.11367 -18.61437 -18.33068 -18.11562 -17.74956 -16.94706 -16.52249 -16.29340 -15.91150 -15.72493 -15.46896 -15.35791 -14.95357 -14.61575 -14.08565 -13.80459 -13.47892 -13.16318 -12.79898 -12.51705 -12.08111 -11.98982 -11.96830 -11.53406 -11.47738 -11.21208 -11.13905 -11.10853 -10.97494 -10.79097 -10.54146 -10.48376 -10.45990 -10.32097 -9.35220 -9.14160 -8.92522 -8.47119 -7.65714 -6.56405 -4.04260 -0.52486 0.79722 1.15887 1.28986 2.25700 2.98705 3.07861 3.15547 3.22957 3.23349 3.86263 4.04132 4.10464 4.40428 4.62533 4.75448 4.80600 4.84462 4.99558 5.06939 5.21732 5.27028 5.55238 5.61746 5.68163 5.75116 5.85207 6.00173 6.05787 6.13460 6.34727 6.39404 6.53683 6.95773 7.16411 7.69307 7.85537 7.93143 8.50755 8.86637 9.20556 9.96581 10.45316 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010134 B = 0.005641 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.193290 B = 4962.668945 C = 7349.267351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.408 5.408 10 C 0.087 3.913 11 C -0.130 4.130 12 C 0.480 3.520 13 O -0.520 6.520 14 O -0.518 6.518 15 C 0.489 3.511 16 O -0.517 6.517 17 C -0.124 4.124 18 C -0.057 4.057 19 C -0.132 4.132 20 C -0.051 4.051 21 C -0.043 4.043 22 N -0.009 5.009 23 O -0.201 6.201 24 O -0.151 6.151 25 C 0.221 3.779 26 O -0.456 6.456 27 H 0.276 0.724 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.404 0.596 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -9.080 -4.973 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.514 4.514 8 H 0.107 0.893 9 N -0.125 5.125 10 C -0.036 4.036 11 C -0.169 4.169 12 C 0.322 3.678 13 O -0.409 6.409 14 O -0.330 6.330 15 C 0.278 3.722 16 O -0.396 6.396 17 C -0.130 4.130 18 C -0.076 4.076 19 C -0.151 4.151 20 C -0.071 4.071 21 C -0.131 4.131 22 N 0.468 4.532 23 O -0.387 6.387 24 O -0.350 6.350 25 C 0.171 3.829 26 O -0.269 6.269 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.263 0.737 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.172 0.828 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.980 -8.459 -4.940 10.239 hybrid contribution -0.130 0.259 -0.014 0.291 sum -3.111 -8.200 -4.954 10.073 Atomic orbital electron populations 1.68809 1.08430 1.29319 1.34315 1.26890 0.94219 1.00005 0.92503 0.86088 0.80660 0.81187 0.77852 1.18795 1.20816 1.20179 1.19879 0.95821 0.84134 1.51573 0.89290 1.41956 1.45020 1.08040 1.17506 1.22025 0.99719 0.90582 0.91310 1.21919 1.03994 0.93399 0.97546 1.23881 0.76082 0.89109 0.78701 1.90712 1.36311 1.44662 1.69200 1.84608 1.65266 1.45541 1.37544 1.17429 0.86191 0.86299 0.82237 1.90623 1.58639 1.31122 1.59194 1.21160 1.01547 0.98777 0.91467 1.22376 0.91628 0.91762 1.01881 1.21089 1.01635 0.98685 0.93663 1.20988 0.95411 0.97998 0.92662 1.20846 1.14694 1.00006 0.77547 1.50275 0.96871 1.01709 1.04322 1.96232 1.48885 1.10424 1.83184 1.96301 1.50918 1.33903 1.53859 1.18121 0.89153 0.86993 0.88664 1.84676 1.39502 1.40609 1.62150 0.91187 0.90661 0.89779 0.87609 0.85662 0.73747 0.82513 0.83430 0.82835 0.72870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.78 11.81 56.00 0.66 -19.12 16 2 C 0.09 2.09 4.45 -15.16 -0.07 2.03 16 3 Si 0.92 19.48 29.69 -169.99 -5.05 14.43 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.39 -9.33 9.21 -13.45 -0.12 -9.45 16 8 H 0.09 2.10 8.01 -52.48 -0.42 1.68 16 9 N -0.41 -8.95 2.49 -114.50 -0.28 -9.23 16 10 C 0.09 1.51 4.12 -4.04 -0.02 1.49 16 11 C -0.13 -1.92 5.10 -27.89 -0.14 -2.06 16 12 C 0.48 6.21 8.28 36.00 0.30 6.50 16 13 O -0.52 -7.83 16.74 -18.75 -0.31 -8.14 16 14 O -0.52 -5.29 13.42 -39.25 -0.53 -5.82 16 15 C 0.49 11.18 6.71 -12.55 -0.08 11.09 16 16 O -0.52 -13.65 13.44 -12.22 -0.16 -13.82 16 17 C -0.12 -2.30 5.48 -104.84 -0.57 -2.87 16 18 C -0.06 -0.84 7.38 -39.18 -0.29 -1.13 16 19 C -0.13 -1.56 10.02 -39.63 -0.40 -1.95 16 20 C -0.05 -0.66 9.57 -39.52 -0.38 -1.04 16 21 C -0.04 -0.71 6.89 -79.84 -0.55 -1.26 16 22 N -0.01 -0.15 4.98 34.01 0.17 0.02 16 23 O -0.20 -3.56 19.14 -31.57 -0.60 -4.16 16 24 O -0.15 -2.88 17.89 -39.22 -0.70 -3.59 16 25 C 0.22 4.00 6.67 -38.65 -0.26 3.74 16 26 O -0.46 -8.69 10.07 -48.22 -0.49 -9.17 16 27 H 0.28 6.62 8.27 -40.82 -0.34 6.28 16 28 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 29 H 0.08 1.35 3.96 -51.93 -0.21 1.14 16 30 H 0.11 1.53 7.00 -51.93 -0.36 1.17 16 31 H 0.13 1.98 8.08 -51.93 -0.42 1.56 16 32 H 0.40 2.24 9.10 45.56 0.41 2.66 16 33 H 0.16 2.16 3.27 -52.49 -0.17 1.99 16 34 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.15 1.66 7.56 -52.49 -0.40 1.26 16 36 H 0.41 6.61 9.06 45.56 0.41 7.02 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -32.30 325.32 -6.10 -38.40 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -1.12 Total: 10.21 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -2.58 Total: 5.09 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 0.55 Total: -28.34 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -2.80 Total: -44.70 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.05 Total: 14.43 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.30 -6.10 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072320.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.256 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds