Wall clock time and date at job start Tue Mar 31 2020 13:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29309 * 1 3 3 Si 1.86797 * 119.99840 * 2 1 4 4 H 1.48503 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47360 * 299.99921 * 3 2 1 6 6 H 1.48502 * 109.47253 * 60.00406 * 3 2 1 7 7 C 1.46791 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99983 * 159.55562 * 7 2 1 9 9 N 1.33310 * 120.00113 * 339.55100 * 7 2 1 10 10 C 1.46502 * 119.99869 * 135.18027 * 9 7 2 11 11 C 1.52997 * 109.47445 * 282.35863 * 10 9 7 12 12 C 1.50696 * 109.46973 * 180.02562 * 11 10 9 13 13 O 1.20831 * 120.00330 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00121 * 180.02562 * 12 11 10 15 15 C 1.34776 * 119.99780 * 315.19153 * 9 7 2 16 16 O 1.21512 * 120.00345 * 7.11129 * 15 9 7 17 17 C 1.47365 * 119.99671 * 187.12348 * 15 9 7 18 18 C 1.39806 * 120.20118 * 324.35413 * 17 15 9 19 19 C 1.37744 * 119.89891 * 179.97438 * 18 17 15 20 20 C 1.38585 * 120.31728 * 359.97438 * 19 18 17 21 21 C 1.38063 * 120.40835 * 359.72354 * 20 19 18 22 22 N 1.48008 * 119.95472 * 180.27993 * 21 20 19 23 23 O 1.31698 * 120.00235 * 0.27692 * 22 21 20 24 24 O 1.31703 * 119.99915 * 180.27432 * 22 21 20 25 25 C 1.38703 * 120.09072 * 0.55208 * 21 20 19 26 26 O 1.35631 * 120.15800 * 179.71932 * 25 21 20 27 27 H 0.97000 * 120.00362 * 5.03703 * 1 2 3 28 28 H 1.09001 * 109.46618 * 42.36828 * 10 9 7 29 29 H 1.09002 * 109.46555 * 162.35922 * 10 9 7 30 30 H 1.08990 * 109.47527 * 300.00335 * 11 10 9 31 31 H 1.09004 * 109.46489 * 60.00663 * 11 10 9 32 32 H 0.96704 * 117.00209 * 180.02562 * 14 12 11 33 33 H 1.07998 * 120.05430 * 359.95501 * 18 17 15 34 34 H 1.08006 * 119.84100 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.79807 * 180.02562 * 20 19 18 36 36 H 0.96700 * 113.99796 * 269.73107 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2270 1.6177 0.0000 4 1 3.6871 1.3465 -0.0006 5 1 1.8683 2.3965 -1.2125 6 1 1.8684 2.3964 1.2126 7 6 2.0271 -1.2712 -0.0006 8 1 3.0561 -1.3005 -0.3273 9 7 1.4236 -2.3896 0.4023 10 6 1.5763 -3.6239 -0.3718 11 6 0.6740 -3.5669 -1.6061 12 6 0.8307 -4.8369 -2.4019 13 8 1.5869 -5.6991 -2.0213 14 8 0.1310 -5.0101 -3.5343 15 6 0.6729 -2.3845 1.5216 16 8 0.4395 -1.3372 2.0919 17 6 0.1353 -3.6491 2.0539 18 6 -0.2771 -4.6606 1.1813 19 6 -0.7781 -5.8404 1.6856 20 6 -0.8753 -6.0306 3.0549 21 6 -0.4660 -5.0428 3.9284 22 7 -0.5686 -5.2590 5.3890 23 8 -1.0448 -6.3951 5.8547 24 8 -0.1835 -4.3152 6.2230 25 6 0.0357 -3.8459 3.4390 26 8 0.4329 -2.8724 4.2958 27 1 -0.4851 0.8368 -0.0738 28 1 2.6149 -3.7299 -0.6854 29 1 1.2943 -4.4770 0.2454 30 1 -0.3644 -3.4609 -1.2925 31 1 0.9561 -2.7138 -2.2232 32 1 0.2646 -5.8412 -4.0102 33 1 -0.2032 -4.5171 0.1134 34 1 -1.0968 -6.6211 1.0106 35 1 -1.2690 -6.9591 3.4412 36 1 -0.2667 -2.2487 4.5339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072320.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:45 Heat of formation + Delta-G solvation = -95.251461 kcal Electronic energy + Delta-G solvation = -28045.336553 eV Core-core repulsion = 23693.593695 eV Total energy + Delta-G solvation = -4351.742858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14908 -41.20684 -40.28096 -39.12681 -38.23604 -37.15832 -36.46250 -35.50720 -34.59491 -32.95985 -32.11462 -31.45207 -27.89554 -27.01977 -25.96401 -24.24209 -23.56713 -22.18586 -21.56902 -20.06179 -19.70345 -19.18915 -19.06664 -18.44075 -17.77970 -17.54082 -17.20602 -17.10351 -16.97951 -16.56555 -16.47458 -16.02540 -15.58956 -15.28202 -14.71394 -14.59275 -14.02325 -13.78995 -13.60593 -13.39887 -13.20773 -13.04672 -12.78629 -12.68344 -12.57692 -12.52739 -12.45363 -12.24740 -12.01783 -11.90353 -11.83846 -11.57404 -10.92401 -10.67155 -10.26507 -10.11156 -9.41359 -8.36428 -5.89641 -1.88169 -0.45051 -0.11911 -0.02716 1.23109 1.36972 1.46540 1.52532 1.79443 2.08640 2.31197 2.50153 2.62192 2.88980 3.15039 3.41264 3.48699 3.64644 3.75791 3.84525 3.92657 3.99084 4.34680 4.41019 4.50876 4.57957 4.58948 4.77643 4.82727 4.88971 5.09416 5.24076 5.33893 5.55589 5.65918 6.08624 6.34930 6.73117 7.06754 7.15155 7.49716 8.24487 8.66159 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010134 B = 0.005641 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.193290 B = 4962.668945 C = 7349.267351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.049 3.951 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.295 1.295 7 C -0.415 4.415 8 H 0.083 0.917 9 N -0.420 5.420 10 C 0.090 3.910 11 C -0.124 4.124 12 C 0.499 3.501 13 O -0.539 6.539 14 O -0.510 6.510 15 C 0.482 3.518 16 O -0.567 6.567 17 C -0.150 4.150 18 C -0.043 4.043 19 C -0.106 4.106 20 C -0.021 4.021 21 C -0.055 4.055 22 N -0.006 5.006 23 O -0.168 6.168 24 O -0.212 6.212 25 C 0.204 3.796 26 O -0.478 6.478 27 H 0.274 0.726 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.429 0.571 33 H 0.168 0.832 34 H 0.205 0.795 35 H 0.192 0.808 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -12.801 -6.612 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.169 4.169 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.221 1.221 7 C -0.542 4.542 8 H 0.101 0.899 9 N -0.137 5.137 10 C -0.033 4.033 11 C -0.162 4.162 12 C 0.342 3.658 13 O -0.430 6.430 14 O -0.323 6.323 15 C 0.272 3.728 16 O -0.448 6.448 17 C -0.155 4.155 18 C -0.061 4.061 19 C -0.125 4.125 20 C -0.040 4.040 21 C -0.143 4.143 22 N 0.467 4.533 23 O -0.366 6.366 24 O -0.396 6.396 25 C 0.154 3.846 26 O -0.292 6.292 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.291 0.709 33 H 0.185 0.815 34 H 0.222 0.778 35 H 0.209 0.791 36 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.127 -12.094 -6.593 14.379 hybrid contribution 0.120 1.057 0.471 1.164 sum -4.007 -11.037 -6.121 13.242 Atomic orbital electron populations 1.68858 1.09333 1.29502 1.36371 1.27495 0.94822 1.02305 0.92308 0.85349 0.79767 0.78418 0.77459 1.18495 1.19025 1.22138 1.19923 0.95943 0.85461 1.52896 0.89926 1.42066 1.44645 1.08871 1.18147 1.22084 1.00219 0.88870 0.92107 1.21640 1.03467 0.94375 0.96731 1.23140 0.75801 0.87778 0.79080 1.90720 1.37191 1.45106 1.69977 1.84532 1.64162 1.47275 1.36371 1.18057 0.85545 0.87282 0.81926 1.90572 1.60378 1.33447 1.60451 1.20827 1.04340 0.98220 0.92161 1.22591 0.90028 0.91630 1.01893 1.21661 0.98829 0.98222 0.93739 1.21606 0.92050 0.97754 0.92606 1.21048 1.15771 1.00399 0.77102 1.50458 0.96399 1.01434 1.04975 1.96191 1.46798 1.10063 1.83510 1.96333 1.54243 1.34553 1.54424 1.18283 0.90184 0.87568 0.88517 1.84636 1.40485 1.41379 1.62651 0.91445 0.91135 0.88219 0.87151 0.87006 0.70866 0.81490 0.77799 0.79109 0.72412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.87 11.81 23.26 0.27 -42.59 16 2 C 0.05 2.48 4.45 87.30 0.39 2.87 16 3 Si 0.97 41.56 29.69 68.60 2.04 43.59 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 7 C -0.41 -20.82 9.21 86.71 0.80 -20.02 16 8 H 0.08 4.10 8.01 -2.91 -0.02 4.07 16 9 N -0.42 -18.93 2.49 -634.46 -1.58 -20.50 16 10 C 0.09 3.05 4.12 86.38 0.36 3.41 16 11 C -0.12 -3.49 5.10 29.85 0.15 -3.34 16 12 C 0.50 11.40 8.28 71.23 0.59 11.99 16 13 O -0.54 -14.47 16.74 21.95 0.37 -14.10 16 14 O -0.51 -8.48 13.42 -51.40 -0.69 -9.17 16 15 C 0.48 22.74 6.71 86.65 0.58 23.32 16 16 O -0.57 -31.60 13.44 13.05 0.18 -31.42 16 17 C -0.15 -5.50 5.48 -20.01 -0.11 -5.61 16 18 C -0.04 -1.11 7.38 22.53 0.17 -0.94 16 19 C -0.11 -1.85 10.02 22.24 0.22 -1.63 16 20 C -0.02 -0.43 9.57 22.31 0.21 -0.21 16 21 C -0.05 -1.68 6.89 36.45 0.25 -1.43 16 22 N -0.01 -0.22 4.98 -46.30 -0.23 -0.45 16 23 O -0.17 -5.40 19.14 3.52 0.07 -5.33 16 24 O -0.21 -8.34 17.89 10.83 0.19 -8.14 16 25 C 0.20 7.40 6.67 22.87 0.15 7.55 16 26 O -0.48 -19.31 10.07 -61.12 -0.62 -19.93 16 27 H 0.27 13.76 8.27 -92.71 -0.77 12.99 16 28 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 29 H 0.10 3.00 3.96 -2.39 -0.01 2.99 16 30 H 0.11 3.01 7.00 -2.39 -0.02 2.99 16 31 H 0.11 3.52 8.08 -2.38 -0.02 3.50 16 32 H 0.43 2.87 9.10 -74.05 -0.67 2.19 16 33 H 0.17 4.04 3.27 -2.91 -0.01 4.03 16 34 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.19 2.68 7.56 -2.91 -0.02 2.65 16 36 H 0.41 14.79 9.06 -74.06 -0.67 14.11 16 Total: -1.00 -75.07 325.32 3.63 -71.44 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.13 Total: 20.64 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 3.76 Total: 15.97 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -1.53 Total: -63.55 kcal Atomic # 8 Polarization: -87.59 SS G_CDS: -0.50 Total: -88.09 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.04 Total: 43.59 kcal Total: -75.07 3.63 -71.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072320.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.814 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds