Wall clock time and date at job start Tue Mar 31 2020 14:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86802 * 120.00242 * 2 1 4 4 H 1.48496 * 109.47332 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47109 * 299.99765 * 3 2 1 6 6 H 1.48506 * 109.47047 * 59.99474 * 3 2 1 7 7 C 1.38637 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00012 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.35781 * 116.99653 * 185.05853 * 9 7 2 11 11 C 1.38736 * 120.08488 * 354.43831 * 10 9 7 12 12 C 1.38348 * 119.97306 * 179.97438 * 11 10 9 13 13 F 1.35096 * 119.92499 * 180.02562 * 12 11 10 14 14 C 1.38548 * 120.15204 * 359.97438 * 12 11 10 15 15 C 1.38196 * 120.17431 * 359.97438 * 14 12 11 16 16 C 1.38690 * 120.02100 * 0.25468 * 15 14 12 17 17 N 1.40136 * 120.07895 * 179.72178 * 16 15 14 18 18 C 1.34782 * 119.99582 * 33.74223 * 17 16 15 19 19 O 1.21589 * 120.00131 * 5.82760 * 18 17 16 20 20 N 1.34773 * 119.99774 * 185.82089 * 18 17 16 21 21 C 1.46505 * 119.99774 * 175.01266 * 20 18 17 22 22 C 1.50694 * 115.54917 * 279.43407 * 21 20 18 23 23 O 1.20821 * 120.00424 * 175.54279 * 22 21 20 24 24 O 1.34231 * 120.00229 * 355.54510 * 22 21 20 25 25 C 1.52998 * 117.49938 * 133.72627 * 21 20 18 26 26 C 1.52995 * 60.00042 * 252.50821 * 25 21 20 27 27 H 0.97007 * 119.99793 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.01646 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.91193 * 179.97438 * 14 12 11 30 30 H 1.07998 * 119.99204 * 179.97438 * 15 14 12 31 31 H 0.96996 * 120.00523 * 213.74558 * 17 16 15 32 32 H 0.97004 * 120.00208 * 355.01182 * 20 18 17 33 33 H 0.96698 * 117.00416 * 179.97438 * 24 22 21 34 34 H 1.09001 * 117.49806 * 359.97438 * 25 21 20 35 35 H 1.09008 * 117.49968 * 145.01639 * 25 21 20 36 36 H 1.08997 * 117.50088 * 252.51067 * 26 25 21 37 37 H 1.09000 * 117.49672 * 107.48945 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3347 -2.3681 0.0005 10 6 2.0701 -3.5045 0.1078 11 6 3.4559 -3.4399 0.0948 12 6 4.2029 -4.5991 0.2048 13 9 5.5523 -4.5351 0.1926 14 6 3.5704 -5.8256 0.3284 15 6 2.1903 -5.8970 0.3430 16 6 1.4344 -4.7399 0.2285 17 7 0.0349 -4.8115 0.2373 18 6 -0.5873 -5.7462 0.9829 19 8 0.0579 -6.4575 1.7287 20 7 -1.9247 -5.8922 0.9019 21 6 -2.5882 -6.9781 1.6278 22 6 -2.5333 -8.3309 0.9661 23 8 -2.9837 -9.2989 1.5317 24 8 -1.9840 -8.4606 -0.2518 25 6 -3.8490 -6.6301 2.4216 26 6 -2.5427 -6.9372 3.1565 27 1 -0.4850 0.8401 -0.0004 28 1 3.9514 -2.4851 -0.0010 29 1 4.1573 -6.7282 0.4135 30 1 1.7003 -6.8546 0.4391 31 1 -0.4861 -4.1885 -0.2931 32 1 -2.4479 -5.2784 0.3629 33 1 -1.9713 -9.3481 -0.6355 34 1 -4.1845 -5.5932 2.4042 35 1 -4.6392 -7.3797 2.4652 36 1 -2.4734 -7.8887 3.6836 37 1 -2.0191 -6.1023 3.6222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:29 Heat of formation + Delta-G solvation = -148.159424 kcal Electronic energy + Delta-G solvation = -27073.911262 eV Core-core repulsion = 22732.246932 eV Total energy + Delta-G solvation = -4341.664330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.81918 -42.05171 -41.35122 -40.32177 -38.50713 -37.83094 -37.03312 -35.55164 -34.29680 -33.78617 -31.07405 -29.75414 -27.39145 -26.48335 -24.33929 -23.77750 -23.39414 -22.20862 -21.18183 -20.13895 -19.76861 -19.50051 -19.17919 -18.50057 -17.85155 -17.19756 -16.95430 -16.60712 -16.53853 -16.34694 -16.01519 -15.88236 -15.60961 -15.38670 -15.22410 -15.11084 -14.87954 -14.06813 -13.99473 -13.76081 -13.41989 -13.04852 -12.75382 -12.63357 -12.47611 -12.40637 -12.31512 -12.11334 -12.03889 -11.67969 -11.63970 -11.34916 -11.04339 -10.81793 -10.36219 -9.54781 -8.73245 -8.50166 -6.15373 0.20778 0.47095 0.93196 1.37565 1.39565 1.44065 1.54432 1.80648 2.10401 2.14944 2.65462 2.69790 3.00529 3.03792 3.21576 3.46661 3.53584 3.68829 3.94257 4.07433 4.16842 4.36165 4.42174 4.60249 4.61220 4.84682 4.93053 5.02252 5.05520 5.22525 5.25031 5.29788 5.35972 5.49533 5.56587 5.85061 5.94817 6.06800 6.88308 6.91890 6.95164 7.43112 7.64067 8.70666 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.003830 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.906584 B = 7309.694451 C = 9079.853541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.010 2.990 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.415 4.415 8 H 0.099 0.901 9 O -0.201 6.201 10 C 0.132 3.868 11 C -0.263 4.263 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.202 4.202 15 C -0.049 4.049 16 C 0.084 3.916 17 N -0.663 5.663 18 C 0.711 3.289 19 O -0.603 6.603 20 N -0.690 5.690 21 C 0.076 3.924 22 C 0.518 3.482 23 O -0.538 6.538 24 O -0.506 6.506 25 C -0.102 4.102 26 C -0.132 4.132 27 H 0.274 0.726 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.415 0.585 32 H 0.418 0.582 33 H 0.428 0.572 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -10.941 0.179 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.491 4.491 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.078 3.922 11 C -0.284 4.284 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.222 4.222 15 C -0.070 4.070 16 C -0.011 4.011 17 N -0.310 5.310 18 C 0.412 3.588 19 O -0.482 6.482 20 N -0.346 5.346 21 C -0.015 4.015 22 C 0.361 3.639 23 O -0.429 6.429 24 O -0.318 6.318 25 C -0.139 4.139 26 C -0.170 4.170 27 H 0.084 0.916 28 H 0.154 0.846 29 H 0.174 0.826 30 H 0.164 0.836 31 H 0.251 0.749 32 H 0.256 0.744 33 H 0.289 0.711 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.131 0.869 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.437 -11.284 1.094 13.037 hybrid contribution 0.397 0.883 -0.879 1.308 sum -6.040 -10.401 0.216 12.029 Atomic orbital electron populations 1.70117 1.07456 1.28849 1.47645 1.26334 0.96827 1.01987 0.95575 0.84634 0.78257 0.75507 0.78571 1.18107 1.19192 1.19554 1.21771 0.92502 0.81133 1.53658 0.88406 1.83894 1.34610 1.11739 1.80413 1.19101 0.90075 0.87084 0.95911 1.20926 0.93359 0.99061 1.15033 1.17436 0.76229 0.94233 1.01904 1.91427 1.29516 1.97348 1.94068 1.20836 0.94461 0.96555 1.10377 1.20661 0.92527 0.96755 0.97053 1.16818 0.82496 0.90733 1.11085 1.42156 1.04508 1.35846 1.48462 1.15895 0.82376 0.80657 0.79895 1.90886 1.65492 1.49274 1.42549 1.43952 1.04471 1.32677 1.53533 1.19852 1.05854 0.83426 0.92360 1.22517 0.72455 0.89831 0.79109 1.90708 1.46660 1.40368 1.65125 1.84525 1.73843 1.41293 1.32184 1.23701 0.89548 1.06099 0.94534 1.23374 1.00237 1.05011 0.88414 0.91647 0.84620 0.82570 0.83626 0.74863 0.74365 0.71075 0.84314 0.84927 0.86880 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.77 13.67 21.61 0.30 -49.48 16 2 C -0.01 -0.39 5.49 84.83 0.47 0.08 16 3 Si 1.01 40.16 29.55 68.60 2.03 42.19 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.41 -22.18 9.49 67.92 0.64 -21.53 16 8 H 0.10 4.94 5.21 -2.91 -0.02 4.93 16 9 O -0.20 -10.66 9.30 -22.93 -0.21 -10.87 16 10 C 0.13 6.09 6.66 22.68 0.15 6.24 16 11 C -0.26 -11.40 9.14 22.42 0.20 -11.19 16 12 C 0.12 4.66 7.29 22.37 0.16 4.83 16 13 F -0.14 -5.24 17.26 44.97 0.78 -4.47 16 14 C -0.20 -6.97 10.02 22.33 0.22 -6.75 16 15 C -0.05 -1.81 8.65 22.37 0.19 -1.61 16 16 C 0.08 3.42 6.29 38.22 0.24 3.66 16 17 N -0.66 -23.73 5.21 -316.70 -1.65 -25.38 16 18 C 0.71 23.57 8.22 179.05 1.47 25.05 16 19 O -0.60 -23.30 13.65 -4.00 -0.05 -23.35 16 20 N -0.69 -16.79 5.18 -441.45 -2.29 -19.08 16 21 C 0.08 1.68 2.23 2.85 0.01 1.69 16 22 C 0.52 12.41 8.07 71.23 0.58 12.99 16 23 O -0.54 -14.60 17.23 21.98 0.38 -14.22 16 24 O -0.51 -10.46 13.13 -51.43 -0.68 -11.14 16 25 C -0.10 -1.49 10.02 30.59 0.31 -1.18 16 26 C -0.13 -2.80 9.35 30.59 0.29 -2.51 16 27 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 28 H 0.14 5.98 5.64 -2.91 -0.02 5.96 16 29 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.15 5.14 6.46 -2.91 -0.02 5.12 16 31 H 0.41 14.17 8.57 -92.71 -0.79 13.38 16 32 H 0.42 8.04 8.85 -92.71 -0.82 7.22 16 33 H 0.43 4.85 9.10 -74.06 -0.67 4.18 16 34 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.13 1.58 8.13 -2.38 -0.02 1.56 16 36 H 0.11 2.39 7.97 -2.39 -0.02 2.37 16 37 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -70.62 339.02 2.44 -68.18 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -1.09 Total: 37.87 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 4.93 Total: 9.75 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -3.64 Total: -93.94 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -0.56 Total: -59.58 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.47 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -70.62 2.44 -68.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.978 kcal (2) G-P(sol) polarization free energy of solvation -70.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds