Wall clock time and date at job start Tue Mar 31 2020 13:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48506 * 109.46904 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47412 * 300.00177 * 3 2 1 6 6 H 1.48502 * 109.47207 * 60.00233 * 3 2 1 7 7 C 1.38801 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99430 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00539 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00276 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47387 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 O 1.45206 * 109.46777 * 180.02562 * 12 11 10 14 14 C 1.34224 * 117.00077 * 179.97438 * 13 12 11 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47225 * 180.02562 * 16 14 13 18 18 C 1.38391 * 119.92041 * 269.71988 * 17 16 14 19 19 C 1.38354 * 120.30045 * 179.72573 * 18 17 16 20 20 C 1.37964 * 120.14805 * 0.55148 * 19 18 17 21 21 C 1.39614 * 119.84963 * 359.72441 * 20 19 18 22 22 C 1.47721 * 120.15133 * 180.02562 * 21 20 19 23 23 O 1.21475 * 120.00102 * 179.97438 * 22 21 20 24 24 O 1.34708 * 119.99881 * 359.97438 * 22 21 20 25 25 C 1.37915 * 119.92645 * 89.99935 * 17 16 14 26 26 H 0.96995 * 119.99998 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47035 * 60.00135 * 10 9 7 28 28 H 1.08996 * 109.47323 * 300.00385 * 10 9 7 29 29 H 1.09000 * 109.46866 * 60.00101 * 11 10 9 30 30 H 1.09001 * 109.46611 * 300.00218 * 11 10 9 31 31 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 32 32 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 33 33 H 1.09009 * 109.46972 * 299.99362 * 16 14 13 34 34 H 1.08995 * 109.47473 * 59.99636 * 16 14 13 35 35 H 1.07996 * 119.85143 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.92153 * 180.25805 * 19 18 17 37 37 H 1.07997 * 120.07500 * 179.74758 * 20 19 18 38 38 H 0.96706 * 116.99861 * 179.97438 * 24 22 21 39 39 H 1.08001 * 120.07617 * 359.97190 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9792 -5.3244 -0.0036 12 6 3.1512 -6.3078 -0.0038 13 8 2.6420 -7.6676 -0.0050 14 6 3.5483 -8.6577 -0.0059 15 8 4.7281 -8.3968 -0.0062 16 6 3.0944 -10.0947 -0.0078 17 6 4.2980 -11.0017 -0.0078 18 6 4.8466 -11.4205 -1.2073 19 6 5.9549 -12.2486 -1.2166 20 6 6.5138 -12.6716 -0.0282 21 6 5.9619 -12.2574 1.1855 22 6 6.5552 -12.7058 2.4618 23 8 6.0731 -12.3435 3.5163 24 8 7.6310 -13.5166 2.4564 25 6 4.8466 -11.4170 1.1874 26 1 -0.4850 0.8400 0.0004 27 1 3.1243 -3.7322 0.8872 28 1 3.1244 -3.7306 -0.8927 29 1 1.3703 -5.4839 -0.8935 30 1 1.3708 -5.4848 0.8865 31 1 3.7598 -6.1481 0.8863 32 1 3.7599 -6.1474 -0.8937 33 1 2.4948 -10.2875 0.8819 34 1 2.4953 -10.2854 -0.8981 35 1 4.4106 -11.0956 -2.1404 36 1 6.3807 -12.5684 -2.1562 37 1 7.3765 -13.3212 -0.0368 38 1 7.9842 -13.7831 3.3163 39 1 4.4149 -11.0927 2.1228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:35 Heat of formation + Delta-G solvation = -192.633511 kcal Electronic energy + Delta-G solvation = -22828.461317 eV Core-core repulsion = 19018.788871 eV Total energy + Delta-G solvation = -3809.672446 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76843 -41.32505 -39.77935 -37.80796 -37.16415 -34.93572 -34.59741 -34.14678 -32.29231 -29.53023 -28.01801 -27.21706 -25.84910 -23.56254 -22.73100 -22.38806 -21.54551 -19.59655 -19.02757 -18.72355 -18.41424 -17.84948 -17.36510 -17.00865 -16.91004 -16.72552 -16.41565 -16.10309 -15.80964 -15.35740 -14.97484 -14.46385 -14.23610 -14.21548 -14.15409 -13.77849 -13.50599 -13.13497 -13.12188 -12.96382 -12.70164 -12.65936 -12.61592 -12.40108 -12.37643 -12.17663 -11.74931 -11.73344 -11.51315 -11.42955 -11.16913 -10.36933 -10.09218 -9.92311 -8.68816 -8.39297 -6.15621 -0.37451 0.21589 1.16264 1.27441 1.37862 1.39008 1.47869 1.57708 1.88769 2.00946 2.26053 2.74566 2.95296 3.28088 3.45165 3.77037 3.82289 3.84665 3.95480 3.98630 4.07503 4.15651 4.20959 4.26753 4.31952 4.53965 4.56767 4.61531 4.67642 4.80769 4.91963 5.01480 5.13443 5.20505 5.33700 5.39208 5.39818 5.46330 5.50983 5.81396 6.16952 6.69346 6.88882 7.03429 8.70287 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.001707 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.429232 B =16399.701937 C =16760.690287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.073 0.927 9 S -0.183 6.183 10 C -0.093 4.093 11 C -0.086 4.086 12 C 0.081 3.919 13 O -0.356 6.356 14 C 0.459 3.541 15 O -0.538 6.538 16 C -0.068 4.068 17 C -0.099 4.099 18 C -0.066 4.066 19 C -0.131 4.131 20 C -0.055 4.055 21 C -0.152 4.152 22 C 0.531 3.469 23 O -0.553 6.553 24 O -0.502 6.502 25 C -0.055 4.055 26 H 0.272 0.728 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.433 0.567 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -30.882 -2.417 33.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.689 4.689 8 H 0.091 0.909 9 S 0.045 5.955 10 C -0.242 4.242 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.273 6.273 14 C 0.304 3.696 15 O -0.427 6.427 16 C -0.104 4.104 17 C -0.099 4.099 18 C -0.083 4.083 19 C -0.148 4.148 20 C -0.073 4.073 21 C -0.153 4.153 22 C 0.377 3.623 23 O -0.446 6.446 24 O -0.316 6.316 25 C -0.073 4.073 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.296 0.704 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.861 -30.643 -2.507 32.607 hybrid contribution 1.983 1.446 0.971 2.639 sum 12.844 -29.197 -1.536 31.934 Atomic orbital electron populations 1.70147 1.07612 1.28571 1.47888 1.26057 0.96056 1.03078 0.93723 0.84963 0.78383 0.76674 0.78331 1.18785 1.19565 1.19695 1.23094 0.94835 0.92009 1.58957 0.90861 1.84604 1.13033 1.00765 1.97050 1.23079 1.00801 0.96728 1.03562 1.21105 0.97048 0.89704 1.04550 1.22991 0.96519 0.77200 1.02746 1.86470 1.40608 1.16538 1.83634 1.24328 0.84223 0.89585 0.71505 1.90694 1.20018 1.85518 1.46486 1.20469 0.97005 0.83117 1.09837 1.19358 0.98073 0.99184 0.93295 1.21738 0.94611 0.93909 0.98092 1.21542 0.96056 0.97989 0.99237 1.21752 0.98488 0.96394 0.90702 1.19123 0.99815 1.04979 0.91419 1.21045 0.77495 0.74642 0.89104 1.90891 1.62598 1.56319 1.34762 1.84498 1.43209 1.61251 1.42625 1.21187 0.93525 0.93801 0.98825 0.91879 0.91595 0.91317 0.89954 0.90306 0.91346 0.90791 0.84464 0.82889 0.82760 0.81814 0.82560 0.70449 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.32 13.22 21.65 0.29 -54.04 16 2 C 0.02 0.91 5.49 84.86 0.47 1.37 16 3 Si 0.99 43.90 29.55 68.60 2.03 45.92 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.16 9.50 67.95 0.65 -30.51 16 8 H 0.07 4.08 7.80 -2.90 -0.02 4.06 16 9 S -0.18 -9.62 21.44 -56.49 -1.21 -10.83 16 10 C -0.09 -3.66 5.67 71.98 0.41 -3.25 16 11 C -0.09 -2.68 5.60 30.60 0.17 -2.51 16 12 C 0.08 2.21 5.47 71.98 0.39 2.60 16 13 O -0.36 -8.70 10.22 -51.35 -0.52 -9.23 16 14 C 0.46 10.20 7.95 71.23 0.57 10.76 16 15 O -0.54 -15.70 15.78 21.94 0.35 -15.35 16 16 C -0.07 -0.85 5.94 29.10 0.17 -0.68 16 17 C -0.10 -1.49 4.37 -19.90 -0.09 -1.58 16 18 C -0.07 -0.76 9.69 22.33 0.22 -0.54 16 19 C -0.13 -1.29 10.03 22.23 0.22 -1.07 16 20 C -0.06 -0.68 9.62 22.54 0.22 -0.47 16 21 C -0.15 -2.68 5.87 -20.10 -0.12 -2.80 16 22 C 0.53 9.95 8.27 70.33 0.58 10.54 16 23 O -0.55 -14.25 17.13 19.92 0.34 -13.91 16 24 O -0.50 -5.58 12.68 -56.18 -0.71 -6.29 16 25 C -0.06 -1.02 9.24 22.54 0.21 -0.81 16 26 H 0.27 15.09 8.31 -92.71 -0.77 14.31 16 27 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 28 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 32 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 33 H 0.14 1.26 8.08 -2.38 -0.02 1.24 16 34 H 0.15 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.16 1.27 7.61 -2.91 -0.02 1.25 16 38 H 0.43 1.09 9.11 -74.05 -0.67 0.41 16 39 H 0.13 2.52 7.65 -2.91 -0.02 2.50 16 Total: -1.00 -79.57 365.67 5.02 -74.54 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.41 Total: 8.12 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.07 Total: -18.95 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.29 Total: -54.04 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.55 Total: -44.78 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.21 Total: -10.83 kcal Total: -79.57 5.02 -74.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.090 kcal (2) G-P(sol) polarization free energy of solvation -79.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds