Wall clock time and date at job start Tue Mar 31 2020 13:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48498 * 109.47062 * 239.99793 * 3 2 1 5 5 H 1.48505 * 109.47337 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47130 * 119.99819 * 3 2 1 7 7 C 1.39945 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00051 * 197.84871 * 7 2 1 9 9 C 1.41392 * 119.99829 * 17.84574 * 7 2 1 10 10 C 1.40715 * 120.24786 * 204.38409 * 9 7 2 11 11 C 1.37616 * 119.75074 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24523 * 0.02899 * 11 10 9 13 13 C 1.50701 * 119.74956 * 179.97438 * 12 11 10 14 14 O 1.45200 * 109.47044 * 89.99732 * 13 12 11 15 15 C 1.34226 * 116.99925 * 180.02562 * 14 13 12 16 16 O 1.20830 * 120.00091 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00011 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.47047 * 179.97438 * 17 15 14 19 19 S 1.81399 * 109.47147 * 179.97438 * 18 17 15 20 20 C 1.81396 * 103.00108 * 180.02562 * 19 18 17 21 21 C 1.50703 * 109.47101 * 180.02562 * 20 19 18 22 22 O 1.20826 * 120.00071 * 359.97438 * 21 20 19 23 23 O 1.34226 * 119.99715 * 179.97438 * 21 20 19 24 24 C 1.38633 * 120.50204 * 0.24424 * 12 11 10 25 25 C 1.37626 * 120.24985 * 359.45268 * 24 12 11 26 26 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.12445 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.88115 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.47041 * 329.99964 * 13 12 11 30 30 H 1.08998 * 109.47265 * 209.99502 * 13 12 11 31 31 H 1.09000 * 109.46971 * 299.99646 * 17 15 14 32 32 H 1.08993 * 109.47102 * 59.99734 * 17 15 14 33 33 H 1.08992 * 109.47143 * 300.00047 * 18 17 15 34 34 H 1.09001 * 109.47113 * 60.00180 * 18 17 15 35 35 H 1.09003 * 109.47086 * 300.00247 * 20 19 18 36 36 H 1.08999 * 109.47466 * 59.99725 * 20 19 18 37 37 H 0.96706 * 116.99784 * 180.02562 * 23 21 20 38 38 H 1.07996 * 119.87768 * 179.70605 * 24 12 11 39 39 H 1.07992 * 120.12680 * 180.27380 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2342 0.2872 9 6 1.3522 -2.4071 -0.3742 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8068 -0.2859 12 6 0.0669 -4.7512 -1.1104 13 6 -0.6316 -6.0252 -1.5108 14 8 -1.6654 -6.3361 -0.5397 15 6 -2.3857 -7.4487 -0.7517 16 8 -2.1602 -8.1397 -1.7169 17 6 -3.4757 -7.8360 0.2142 18 6 -4.1366 -9.1334 -0.2561 19 16 -5.4481 -9.6001 0.9069 20 6 -6.1005 -11.1343 0.1921 21 6 -7.2179 -11.6565 1.0580 22 8 -7.5407 -11.0556 2.0553 23 8 -7.8545 -12.7892 0.7213 24 6 -0.4053 -3.5330 -1.5740 25 6 0.2211 -2.3628 -1.2102 26 1 -0.4851 0.8400 -0.0004 27 1 2.6932 -3.6954 0.7276 28 1 1.5421 -5.7616 0.0654 29 1 0.0913 -6.8403 -1.5455 30 1 -1.0835 -5.8981 -2.4945 31 1 -3.0470 -7.9848 1.2052 32 1 -4.2223 -7.0431 0.2566 33 1 -4.5653 -8.9843 -1.2470 34 1 -3.3902 -9.9266 -0.2987 35 1 -6.4804 -10.9354 -0.8100 36 1 -5.3047 -11.8772 0.1380 37 1 -8.5648 -13.0845 1.3074 38 1 -1.2705 -3.5018 -2.2196 39 1 -0.1511 -1.4146 -1.5689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:34 Heat of formation + Delta-G solvation = -167.783519 kcal Electronic energy + Delta-G solvation = -22719.742407 eV Core-core repulsion = 18911.147537 eV Total energy + Delta-G solvation = -3808.594870 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64869 -40.22131 -37.74019 -36.66710 -36.23623 -33.89617 -33.28399 -31.02171 -30.79957 -29.39240 -27.43362 -25.44530 -23.63863 -22.52716 -21.11472 -20.56529 -20.07536 -18.67250 -17.77266 -17.41121 -17.10934 -16.73763 -16.46674 -16.40143 -16.13991 -15.40211 -14.90439 -14.44168 -13.92254 -13.86811 -13.74275 -13.52757 -13.32161 -12.77051 -12.65235 -12.42027 -12.23647 -12.05917 -12.04124 -11.75203 -11.69652 -11.18755 -11.18200 -11.02752 -10.87781 -10.49685 -10.41990 -10.34514 -10.19521 -9.73036 -9.48880 -9.23818 -8.11821 -7.58714 -7.47582 -6.88342 -4.48467 0.76251 1.63576 1.96151 2.34191 2.43501 2.54516 2.96078 2.99116 3.01408 3.04490 3.39333 3.84313 4.35320 4.35590 4.49557 4.57075 4.58017 4.70748 5.01088 5.26081 5.35864 5.53974 5.58782 5.62842 5.67327 5.92480 6.03837 6.22514 6.28883 6.78906 6.85510 6.95635 7.16108 7.24422 7.30704 7.49425 7.71483 7.93560 7.96609 7.98940 8.17236 8.51754 8.76491 8.84696 10.05326 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029646 B = 0.001711 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.236109 B =16358.789646 C =16888.094186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.239 4.239 13 C 0.137 3.863 14 O -0.347 6.347 15 C 0.463 3.537 16 O -0.523 6.523 17 C -0.102 4.102 18 C -0.091 4.091 19 S -0.173 6.173 20 C -0.107 4.107 21 C 0.497 3.503 22 O -0.491 6.491 23 O -0.513 6.513 24 C -0.075 4.075 25 C -0.171 4.171 26 H 0.284 0.716 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.417 0.583 38 H 0.089 0.911 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.706 -17.914 -0.573 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.082 4.082 12 C -0.240 4.240 13 C 0.065 3.935 14 O -0.263 6.263 15 C 0.305 3.695 16 O -0.414 6.414 17 C -0.141 4.141 18 C -0.240 4.240 19 S 0.053 5.947 20 C -0.255 4.255 21 C 0.337 3.663 22 O -0.377 6.377 23 O -0.326 6.326 24 C -0.094 4.094 25 C -0.190 4.190 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.276 0.724 38 H 0.107 0.893 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.932 -17.117 0.088 20.866 hybrid contribution 0.269 -0.147 -0.808 0.864 sum -11.664 -17.264 -0.719 20.847 Atomic orbital electron populations 1.69817 1.07685 1.29690 1.33660 1.25976 0.94768 1.01556 0.92113 0.86318 0.80159 0.79907 0.80113 1.18694 1.20215 1.18864 1.19656 0.98237 0.91248 1.39321 0.90168 1.17689 0.90801 0.92083 0.87859 1.20962 1.04157 0.92674 1.07187 1.20389 0.95102 0.96653 0.96008 1.18674 1.01346 0.91956 1.12033 1.21760 0.86408 0.96010 0.89330 1.86732 1.45966 1.40527 1.53057 1.23316 0.81880 0.79289 0.85019 1.90630 1.67847 1.52563 1.30322 1.20962 0.96265 0.97348 0.99479 1.23298 0.99076 1.00558 1.01041 1.87522 1.43482 1.27113 1.36595 1.23003 0.99052 1.00746 1.02726 1.22247 0.81808 0.78278 0.83994 1.90805 1.63646 1.57183 1.26102 1.84477 1.50280 1.40838 1.56960 1.20538 0.97654 0.92467 0.98720 1.21295 0.99700 0.96652 1.01333 0.90525 0.88697 0.89296 0.92038 0.91975 0.86663 0.86637 0.88668 0.88685 0.85640 0.85641 0.72356 0.89320 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.68 10.95 55.55 0.61 -19.07 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.12 3.08 5.57 -106.82 -0.60 2.49 16 10 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 11 C -0.06 -1.39 9.67 -39.66 -0.38 -1.78 16 12 C -0.24 -5.19 5.54 -104.33 -0.58 -5.77 16 13 C 0.14 2.53 5.58 36.01 0.20 2.73 16 14 O -0.35 -6.14 10.20 -39.25 -0.40 -6.54 16 15 C 0.46 6.81 7.96 36.01 0.29 7.10 16 16 O -0.52 -8.62 15.73 -18.75 -0.30 -8.91 16 17 C -0.10 -1.07 5.82 -27.88 -0.16 -1.23 16 18 C -0.09 -0.82 5.23 37.16 0.19 -0.62 16 19 S -0.17 -1.61 20.88 -107.50 -2.24 -3.86 16 20 C -0.11 -0.67 6.54 36.01 0.24 -0.43 16 21 C 0.50 3.81 8.35 36.01 0.30 4.11 16 22 O -0.49 -5.62 16.62 -18.75 -0.31 -5.93 16 23 O -0.51 -2.54 13.42 -39.25 -0.53 -3.07 16 24 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 25 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 26 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 27 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 30 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.09 0.82 8.10 -51.92 -0.42 0.40 16 35 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 36 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.42 0.40 9.10 45.56 0.41 0.81 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -31.46 361.88 -8.88 -40.34 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.10 Total: 5.04 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.04 Total: -16.43 kcal Atomic # 7 Polarization: -19.68 SS G_CDS: 0.61 Total: -19.07 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -1.53 Total: -24.45 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.24 Total: -3.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.46 -8.88 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.443 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds