Wall clock time and date at job start Tue Mar 31 2020 13:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48498 * 109.47062 * 239.99793 * 3 2 1 5 5 H 1.48505 * 109.47337 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47130 * 119.99819 * 3 2 1 7 7 C 1.39945 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00051 * 197.84871 * 7 2 1 9 9 C 1.41392 * 119.99829 * 17.84574 * 7 2 1 10 10 C 1.40715 * 120.24786 * 204.38409 * 9 7 2 11 11 C 1.37616 * 119.75074 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24523 * 0.02899 * 11 10 9 13 13 C 1.50701 * 119.74956 * 179.97438 * 12 11 10 14 14 O 1.45200 * 109.47044 * 89.99732 * 13 12 11 15 15 C 1.34226 * 116.99925 * 180.02562 * 14 13 12 16 16 O 1.20830 * 120.00091 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00011 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.47047 * 179.97438 * 17 15 14 19 19 S 1.81399 * 109.47147 * 179.97438 * 18 17 15 20 20 C 1.81396 * 103.00108 * 180.02562 * 19 18 17 21 21 C 1.50703 * 109.47101 * 180.02562 * 20 19 18 22 22 O 1.20826 * 120.00071 * 359.97438 * 21 20 19 23 23 O 1.34226 * 119.99715 * 179.97438 * 21 20 19 24 24 C 1.38633 * 120.50204 * 0.24424 * 12 11 10 25 25 C 1.37626 * 120.24985 * 359.45268 * 24 12 11 26 26 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.12445 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.88115 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.47041 * 329.99964 * 13 12 11 30 30 H 1.08998 * 109.47265 * 209.99502 * 13 12 11 31 31 H 1.09000 * 109.46971 * 299.99646 * 17 15 14 32 32 H 1.08993 * 109.47102 * 59.99734 * 17 15 14 33 33 H 1.08992 * 109.47143 * 300.00047 * 18 17 15 34 34 H 1.09001 * 109.47113 * 60.00180 * 18 17 15 35 35 H 1.09003 * 109.47086 * 300.00247 * 20 19 18 36 36 H 1.08999 * 109.47466 * 59.99725 * 20 19 18 37 37 H 0.96706 * 116.99784 * 180.02562 * 23 21 20 38 38 H 1.07996 * 119.87768 * 179.70605 * 24 12 11 39 39 H 1.07992 * 120.12680 * 180.27380 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2342 0.2872 9 6 1.3522 -2.4071 -0.3742 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8068 -0.2859 12 6 0.0669 -4.7512 -1.1104 13 6 -0.6316 -6.0252 -1.5108 14 8 -1.6654 -6.3361 -0.5397 15 6 -2.3857 -7.4487 -0.7517 16 8 -2.1602 -8.1397 -1.7169 17 6 -3.4757 -7.8360 0.2142 18 6 -4.1366 -9.1334 -0.2561 19 16 -5.4481 -9.6001 0.9069 20 6 -6.1005 -11.1343 0.1921 21 6 -7.2179 -11.6565 1.0580 22 8 -7.5407 -11.0556 2.0553 23 8 -7.8545 -12.7892 0.7213 24 6 -0.4053 -3.5330 -1.5740 25 6 0.2211 -2.3628 -1.2102 26 1 -0.4851 0.8400 -0.0004 27 1 2.6932 -3.6954 0.7276 28 1 1.5421 -5.7616 0.0654 29 1 0.0913 -6.8403 -1.5455 30 1 -1.0835 -5.8981 -2.4945 31 1 -3.0470 -7.9848 1.2052 32 1 -4.2223 -7.0431 0.2566 33 1 -4.5653 -8.9843 -1.2470 34 1 -3.3902 -9.9266 -0.2987 35 1 -6.4804 -10.9354 -0.8100 36 1 -5.3047 -11.8772 0.1380 37 1 -8.5648 -13.0845 1.3074 38 1 -1.2705 -3.5018 -2.2196 39 1 -0.1511 -1.4146 -1.5689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:34 Heat of formation + Delta-G solvation = -184.885272 kcal Electronic energy + Delta-G solvation = -22720.483994 eV Core-core repulsion = 18911.147537 eV Total energy + Delta-G solvation = -3809.336457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48954 -41.21774 -39.49474 -37.61251 -37.20111 -35.68268 -34.17342 -32.55060 -31.52618 -31.22755 -29.06708 -26.60281 -25.15954 -23.10386 -22.95079 -21.91424 -21.60701 -19.26989 -19.22075 -18.87117 -17.76040 -17.73941 -17.67063 -17.21621 -17.11775 -16.81636 -16.00840 -15.91878 -15.61908 -15.22191 -14.56998 -14.28579 -14.24456 -14.12650 -13.86420 -13.76700 -13.62375 -13.43840 -13.39925 -12.84329 -12.68728 -12.63111 -12.58443 -12.49814 -12.11188 -11.82418 -11.72763 -11.62328 -11.42133 -11.27909 -11.05653 -11.03117 -9.43782 -9.33176 -8.80559 -8.68670 -6.39811 0.12913 0.76410 1.07723 1.11294 1.17759 1.33171 1.38779 1.47170 1.51695 1.99978 2.11341 2.19850 2.73395 3.54575 3.67576 3.86544 3.93042 3.96840 4.09781 4.12872 4.15827 4.29704 4.42222 4.48275 4.55381 4.57395 4.60928 4.80773 5.00919 5.11786 5.30749 5.39546 5.51621 5.53378 5.65200 5.88818 6.05547 6.14464 6.32254 6.64382 6.73630 6.87541 6.88461 6.97300 8.27756 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029646 B = 0.001711 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.236109 B =16358.789646 C =16888.094186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.080 0.920 9 C 0.086 3.914 10 C -0.246 4.246 11 C -0.065 4.065 12 C -0.232 4.232 13 C 0.141 3.859 14 O -0.363 6.363 15 C 0.466 3.534 16 O -0.539 6.539 17 C -0.096 4.096 18 C -0.077 4.077 19 S -0.218 6.218 20 C -0.098 4.098 21 C 0.502 3.498 22 O -0.537 6.537 23 O -0.504 6.504 24 C -0.081 4.081 25 C -0.194 4.194 26 H 0.291 0.709 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.434 0.566 38 H 0.107 0.893 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.222 -19.503 -0.966 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.523 4.523 8 H 0.098 0.902 9 C 0.084 3.916 10 C -0.265 4.265 11 C -0.084 4.084 12 C -0.234 4.234 13 C 0.069 3.931 14 O -0.279 6.279 15 C 0.309 3.691 16 O -0.430 6.430 17 C -0.134 4.134 18 C -0.225 4.225 19 S 0.008 5.992 20 C -0.246 4.246 21 C 0.344 3.656 22 O -0.427 6.427 23 O -0.318 6.318 24 C -0.099 4.099 25 C -0.214 4.214 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.137 0.863 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.297 0.703 38 H 0.125 0.875 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.469 -18.753 -0.312 22.522 hybrid contribution 0.292 0.081 -0.717 0.779 sum -12.177 -18.672 -1.029 22.316 Atomic orbital electron populations 1.69868 1.09115 1.30951 1.34377 1.26823 0.95499 1.04708 0.91062 0.85214 0.78780 0.75362 0.80160 1.18402 1.19149 1.18244 1.19913 0.98562 0.92436 1.41353 0.90190 1.18055 0.91622 0.93231 0.88714 1.21178 1.04789 0.92878 1.07657 1.20723 0.94817 0.97302 0.95509 1.19030 1.01038 0.92945 1.10355 1.21578 0.87079 0.94738 0.89687 1.86685 1.46205 1.42200 1.52846 1.23995 0.81809 0.77970 0.85345 1.90624 1.68358 1.52764 1.31278 1.21041 0.95069 0.98496 0.98791 1.23157 0.98830 0.99726 1.00812 1.87703 1.44044 1.29763 1.37649 1.23074 0.99303 0.99275 1.02960 1.22471 0.81656 0.78217 0.83250 1.90798 1.65138 1.58622 1.28106 1.84445 1.50665 1.39524 1.57197 1.20792 0.97977 0.92373 0.98782 1.21272 1.00584 0.96962 1.02541 0.89851 0.87950 0.86307 0.90655 0.91183 0.85459 0.85663 0.88296 0.88168 0.83333 0.83268 0.70331 0.87494 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.19 10.95 21.83 0.24 -41.95 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 37.26 29.59 68.60 2.03 39.29 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.49 -26.25 9.05 23.46 0.21 -26.04 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.09 4.63 5.57 -21.29 -0.12 4.51 16 10 C -0.25 -11.92 9.80 22.73 0.22 -11.70 16 11 C -0.07 -2.82 9.67 22.22 0.21 -2.61 16 12 C -0.23 -9.88 5.54 -19.67 -0.11 -9.99 16 13 C 0.14 4.95 5.58 71.24 0.40 5.35 16 14 O -0.36 -12.16 10.20 -51.38 -0.52 -12.68 16 15 C 0.47 12.71 7.96 71.24 0.57 13.28 16 16 O -0.54 -16.55 15.73 21.95 0.35 -16.20 16 17 C -0.10 -1.81 5.82 29.85 0.17 -1.63 16 18 C -0.08 -1.20 5.23 71.98 0.38 -0.82 16 19 S -0.22 -3.69 20.88 -56.49 -1.18 -4.87 16 20 C -0.10 -0.98 6.54 71.24 0.47 -0.51 16 21 C 0.50 6.82 8.35 71.24 0.59 7.41 16 22 O -0.54 -11.94 16.62 21.97 0.37 -11.57 16 23 O -0.50 -3.81 13.42 -51.38 -0.69 -4.50 16 24 C -0.08 -3.73 9.67 22.22 0.21 -3.51 16 25 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 26 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 27 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 28 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.08 2.43 8.07 -2.38 -0.02 2.41 16 30 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 31 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.10 1.47 8.10 -2.39 -0.02 1.45 16 34 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.43 -0.06 9.10 -74.05 -0.67 -0.73 16 38 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -69.32 361.88 4.85 -64.48 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.41 Total: 22.06 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 3.85 Total: -34.05 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.24 Total: -41.95 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.50 Total: -44.95 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.18 Total: -4.87 kcal Total: -69.32 4.85 -64.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.409 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds