Wall clock time and date at job start Tue Mar 31 2020 14:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31264 * 1 3 3 Si 1.86807 * 120.00112 * 2 1 4 4 H 1.48497 * 109.47154 * 89.99970 * 3 2 1 5 5 H 1.48497 * 109.47012 * 210.00501 * 3 2 1 6 6 H 1.48501 * 109.47036 * 330.00123 * 3 2 1 7 7 C 1.39120 * 120.00096 * 179.72628 * 2 1 3 8 8 H 1.08001 * 120.00574 * 155.27731 * 7 2 1 9 9 N 1.36879 * 119.99698 * 335.27650 * 7 2 1 10 10 C 1.37689 * 126.50974 * 147.74685 * 9 7 2 11 11 C 1.46400 * 125.23669 * 359.97438 * 10 9 7 12 12 C 1.35030 * 120.00193 * 174.86567 * 11 10 9 13 13 C 1.46838 * 119.99683 * 179.97438 * 12 11 10 14 14 C 1.41862 * 126.99411 * 0.02648 * 13 12 11 15 15 C 1.34608 * 107.10201 * 179.97438 * 14 13 12 16 16 O 1.33944 * 109.54759 * 0.02562 * 15 14 13 17 17 C 1.34937 * 109.82457 * 359.74031 * 16 15 14 18 18 C 1.41778 * 126.24538 * 180.25613 * 17 16 15 19 19 O 1.21685 * 119.99412 * 180.17586 * 18 17 16 20 20 O 1.34981 * 120.00368 * 0.18031 * 18 17 16 21 21 N 1.31567 * 109.53456 * 179.81687 * 10 9 7 22 22 C 1.34835 * 109.78525 * 0.45323 * 21 10 9 23 23 C 1.39986 * 133.18389 * 179.70890 * 22 21 10 24 24 C 1.37614 * 119.78283 * 180.02562 * 23 22 21 25 25 C 1.38801 * 120.55347 * 359.95158 * 24 23 22 26 26 C 1.37944 * 120.47738 * 0.02914 * 25 24 23 27 27 C 1.38275 * 126.51502 * 328.05569 * 9 7 2 28 28 H 0.96995 * 120.00222 * 174.13505 * 1 2 3 29 29 H 1.08005 * 119.99435 * 354.86480 * 11 10 9 30 30 H 1.08001 * 119.99907 * 359.97438 * 12 11 10 31 31 H 1.08008 * 126.44318 * 359.95248 * 14 13 12 32 32 H 1.08004 * 125.22478 * 179.97438 * 15 14 13 33 33 H 0.96702 * 113.99465 * 179.97438 * 20 18 17 34 34 H 1.08002 * 120.10882 * 0.02562 * 23 22 21 35 35 H 1.08004 * 119.71935 * 179.97438 * 24 23 22 36 36 H 1.08003 * 119.75938 * 180.02562 * 25 24 23 37 37 H 1.07994 * 120.06866 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6178 0.0000 4 1 2.4942 2.0465 1.4000 5 1 3.5442 1.4402 -0.7001 6 1 1.4441 2.6527 -0.7000 7 6 2.0083 -1.2048 0.0058 8 1 3.0140 -1.2496 -0.3852 9 7 1.4179 -2.3335 0.5070 10 6 1.6241 -3.6254 0.0777 11 6 2.5243 -4.0216 -1.0067 12 6 2.7253 -5.3300 -1.2733 13 6 3.6278 -5.7273 -2.3613 14 6 4.3601 -4.8676 -3.2198 15 6 5.0546 -5.6510 -4.0660 16 8 4.8040 -6.9382 -3.7929 17 6 3.9435 -7.0272 -2.7573 18 6 3.4484 -8.2233 -2.1793 19 8 2.6700 -8.1709 -1.2455 20 8 3.8405 -9.4203 -2.6648 21 7 0.8902 -4.4494 0.7942 22 6 0.1754 -3.7531 1.7009 23 6 -0.7468 -4.1269 2.6856 24 6 -1.3274 -3.1642 3.4792 25 6 -1.0057 -1.8243 3.3125 26 6 -0.0989 -1.4372 2.3478 27 6 0.4968 -2.3923 1.5366 28 1 -0.4850 -0.8356 -0.0858 29 1 3.0276 -3.2674 -1.5935 30 1 2.2223 -6.0842 -0.6862 31 1 4.3600 -3.7877 -3.1987 32 1 5.7121 -5.2961 -4.8458 33 1 3.4506 -10.1773 -2.2066 34 1 -1.0018 -5.1675 2.8220 35 1 -2.0390 -3.4537 4.2382 36 1 -1.4687 -1.0794 3.9428 37 1 0.1463 -0.3928 2.2236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601079156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:33 Heat of formation + Delta-G solvation = 7.894816 kcal Electronic energy + Delta-G solvation = -25779.161496 eV Core-core repulsion = 21875.033411 eV Total energy + Delta-G solvation = -3904.128086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.69435 -40.98108 -39.97402 -36.50521 -36.23274 -34.95202 -34.44142 -31.60878 -31.21704 -30.40869 -29.36265 -27.74055 -25.16512 -24.79780 -23.25646 -21.85189 -21.30098 -20.71968 -20.06333 -19.03876 -18.39864 -17.94417 -17.42156 -16.61863 -16.47888 -15.80271 -15.68062 -15.11064 -14.87478 -14.60327 -14.14419 -13.81186 -13.52364 -13.45151 -13.34996 -13.05540 -12.81590 -12.43793 -12.21360 -11.67768 -11.47568 -11.36056 -11.24990 -11.13669 -10.88606 -10.68281 -10.62263 -10.56906 -10.33395 -9.82795 -9.22647 -9.06067 -8.87144 -8.45527 -7.68905 -7.10741 -6.87790 -4.69048 0.37930 1.52914 2.14029 2.52074 2.57087 2.62169 3.01164 3.03538 3.20488 3.26496 3.29315 3.71913 4.05867 4.18222 4.59404 4.62934 4.74000 4.86599 5.06464 5.22914 5.36031 5.54968 5.68702 5.72877 5.79566 5.87425 6.04501 6.16137 6.28069 6.38708 6.43102 6.53346 6.67369 6.73646 6.87678 6.95801 7.07205 7.24585 7.39587 7.45956 7.65275 7.71166 7.77626 7.90897 8.39569 8.91839 9.07616 9.89846 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003827 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.885605 B = 7314.419711 C = 9370.008314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.025 3.975 3 Si 1.083 2.917 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.424 4.424 8 H 0.109 0.891 9 N -0.271 5.271 10 C 0.199 3.801 11 C -0.006 4.006 12 C -0.118 4.118 13 C -0.001 4.001 14 C -0.227 4.227 15 C 0.016 3.984 16 O -0.153 6.153 17 C -0.099 4.099 18 C 0.562 3.438 19 O -0.485 6.485 20 O -0.505 6.505 21 N -0.503 5.503 22 C 0.044 3.956 23 C -0.085 4.085 24 C -0.138 4.138 25 C -0.149 4.149 26 C -0.065 4.065 27 C 0.000 4.000 28 H 0.292 0.708 29 H 0.127 0.873 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.213 0.787 33 H 0.411 0.589 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -6.445 -5.321 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.192 4.192 3 Si 0.905 3.095 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.127 0.873 9 N 0.061 4.939 10 C -0.053 4.053 11 C -0.026 4.026 12 C -0.140 4.140 13 C -0.003 4.003 14 C -0.246 4.246 15 C -0.054 4.054 16 O -0.049 6.049 17 C -0.148 4.148 18 C 0.408 3.592 19 O -0.375 6.375 20 O -0.316 6.316 21 N -0.226 5.226 22 C -0.085 4.085 23 C -0.105 4.105 24 C -0.159 4.159 25 C -0.170 4.170 26 C -0.085 4.085 27 C -0.117 4.117 28 H 0.105 0.895 29 H 0.145 0.855 30 H 0.171 0.829 31 H 0.181 0.819 32 H 0.230 0.770 33 H 0.268 0.732 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.288 -5.450 -5.581 10.675 hybrid contribution -0.062 -0.961 0.164 0.977 sum 7.226 -6.411 -5.417 11.075 Atomic orbital electron populations 1.70552 1.07332 1.33371 1.32176 1.26953 0.95893 1.03245 0.93156 0.83306 0.74920 0.72943 0.78302 1.19906 1.20065 1.19878 1.20771 1.01753 0.86845 1.45952 0.87338 1.41438 1.26864 1.06187 1.19416 1.21320 1.02899 0.81116 0.99948 1.20949 0.93424 0.95585 0.92676 1.21565 0.98849 0.96929 0.96645 1.19939 0.95199 0.90088 0.95086 1.22038 1.02033 1.01658 0.98849 1.24281 1.00510 0.80055 1.00596 1.84096 1.50701 1.28321 1.41783 1.19887 1.04562 0.93172 0.97187 1.17595 0.78651 0.82338 0.80659 1.91073 1.32705 1.86962 1.26743 1.85101 1.68709 1.16844 1.60903 1.70289 1.11446 1.31541 1.09308 1.18764 1.00977 0.89533 0.99228 1.20024 0.96857 0.98633 0.94983 1.20587 1.01740 0.92948 1.00594 1.20625 1.00441 0.95658 1.00238 1.20261 0.96017 0.98322 0.93899 1.18920 1.01425 0.96326 0.95022 0.89512 0.85521 0.82920 0.81853 0.77030 0.73152 0.86904 0.86968 0.86920 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.70 11.46 55.50 0.64 -20.07 16 2 C 0.02 0.59 4.35 -17.47 -0.08 0.51 16 3 Si 1.08 20.27 29.99 -169.99 -5.10 15.17 16 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.28 -4.78 7.11 56.52 0.40 -4.37 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.42 -10.42 9.42 -14.97 -0.14 -10.57 16 8 H 0.11 2.49 7.79 -52.49 -0.41 2.09 16 9 N -0.27 -6.96 2.71 -57.46 -0.16 -7.12 16 10 C 0.20 4.90 7.59 -154.04 -1.17 3.73 16 11 C -0.01 -0.13 9.31 -37.44 -0.35 -0.48 16 12 C -0.12 -2.25 9.22 -37.25 -0.34 -2.59 16 13 C 0.00 -0.01 6.16 -104.56 -0.64 -0.66 16 14 C -0.23 -2.82 10.22 -39.48 -0.40 -3.22 16 15 C 0.02 0.16 12.00 29.45 0.35 0.51 16 16 O -0.15 -1.97 10.63 1.84 0.02 -1.95 16 17 C -0.10 -1.49 7.07 -37.76 -0.27 -1.76 16 18 C 0.56 8.29 8.09 32.08 0.26 8.55 16 19 O -0.48 -8.53 15.47 -19.41 -0.30 -8.83 16 20 O -0.50 -5.58 13.54 -43.91 -0.59 -6.18 16 21 N -0.50 -12.83 10.72 -8.94 -0.10 -12.93 16 22 C 0.04 1.10 7.19 -84.93 -0.61 0.49 16 23 C -0.09 -1.82 10.11 -39.15 -0.40 -2.22 16 24 C -0.14 -2.64 10.01 -39.60 -0.40 -3.04 16 25 C -0.15 -3.00 10.03 -39.48 -0.40 -3.40 16 26 C -0.06 -1.53 8.37 -39.50 -0.33 -1.86 16 27 C 0.00 -0.01 5.58 -83.81 -0.47 -0.48 16 28 H 0.29 8.01 6.90 -40.82 -0.28 7.73 16 29 H 0.13 2.29 6.71 -52.48 -0.35 1.94 16 30 H 0.15 3.26 5.98 -52.49 -0.31 2.95 16 31 H 0.16 1.75 7.40 -52.48 -0.39 1.37 16 32 H 0.21 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.41 2.51 8.98 45.56 0.41 2.92 16 34 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 35 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.11 1.93 8.06 -52.48 -0.42 1.50 16 37 H 0.12 2.99 6.21 -52.49 -0.33 2.67 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -32.14 332.77 -8.10 -40.24 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -2.15 Total: 13.13 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -5.38 Total: -16.47 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.38 Total: -40.11 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.88 Total: -16.97 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.10 Total: 15.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.14 -8.10 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.134 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds