Wall clock time and date at job start Tue Mar 31 2020 14:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31264 * 1 3 3 Si 1.86807 * 120.00112 * 2 1 4 4 H 1.48497 * 109.47154 * 89.99970 * 3 2 1 5 5 H 1.48497 * 109.47012 * 210.00501 * 3 2 1 6 6 H 1.48501 * 109.47036 * 330.00123 * 3 2 1 7 7 C 1.39120 * 120.00096 * 179.72628 * 2 1 3 8 8 H 1.08001 * 120.00574 * 155.27731 * 7 2 1 9 9 N 1.36879 * 119.99698 * 335.27650 * 7 2 1 10 10 C 1.37689 * 126.50974 * 147.74685 * 9 7 2 11 11 C 1.46400 * 125.23669 * 359.97438 * 10 9 7 12 12 C 1.35030 * 120.00193 * 174.86567 * 11 10 9 13 13 C 1.46838 * 119.99683 * 179.97438 * 12 11 10 14 14 C 1.41862 * 126.99411 * 0.02648 * 13 12 11 15 15 C 1.34608 * 107.10201 * 179.97438 * 14 13 12 16 16 O 1.33944 * 109.54759 * 0.02562 * 15 14 13 17 17 C 1.34937 * 109.82457 * 359.74031 * 16 15 14 18 18 C 1.41778 * 126.24538 * 180.25613 * 17 16 15 19 19 O 1.21685 * 119.99412 * 180.17586 * 18 17 16 20 20 O 1.34981 * 120.00368 * 0.18031 * 18 17 16 21 21 N 1.31567 * 109.53456 * 179.81687 * 10 9 7 22 22 C 1.34835 * 109.78525 * 0.45323 * 21 10 9 23 23 C 1.39986 * 133.18389 * 179.70890 * 22 21 10 24 24 C 1.37614 * 119.78283 * 180.02562 * 23 22 21 25 25 C 1.38801 * 120.55347 * 359.95158 * 24 23 22 26 26 C 1.37944 * 120.47738 * 0.02914 * 25 24 23 27 27 C 1.38275 * 126.51502 * 328.05569 * 9 7 2 28 28 H 0.96995 * 120.00222 * 174.13505 * 1 2 3 29 29 H 1.08005 * 119.99435 * 354.86480 * 11 10 9 30 30 H 1.08001 * 119.99907 * 359.97438 * 12 11 10 31 31 H 1.08008 * 126.44318 * 359.95248 * 14 13 12 32 32 H 1.08004 * 125.22478 * 179.97438 * 15 14 13 33 33 H 0.96702 * 113.99465 * 179.97438 * 20 18 17 34 34 H 1.08002 * 120.10882 * 0.02562 * 23 22 21 35 35 H 1.08004 * 119.71935 * 179.97438 * 24 23 22 36 36 H 1.08003 * 119.75938 * 180.02562 * 25 24 23 37 37 H 1.07994 * 120.06866 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6178 0.0000 4 1 2.4942 2.0465 1.4000 5 1 3.5442 1.4402 -0.7001 6 1 1.4441 2.6527 -0.7000 7 6 2.0083 -1.2048 0.0058 8 1 3.0140 -1.2496 -0.3852 9 7 1.4179 -2.3335 0.5070 10 6 1.6241 -3.6254 0.0777 11 6 2.5243 -4.0216 -1.0067 12 6 2.7253 -5.3300 -1.2733 13 6 3.6278 -5.7273 -2.3613 14 6 4.3601 -4.8676 -3.2198 15 6 5.0546 -5.6510 -4.0660 16 8 4.8040 -6.9382 -3.7929 17 6 3.9435 -7.0272 -2.7573 18 6 3.4484 -8.2233 -2.1793 19 8 2.6700 -8.1709 -1.2455 20 8 3.8405 -9.4203 -2.6648 21 7 0.8902 -4.4494 0.7942 22 6 0.1754 -3.7531 1.7009 23 6 -0.7468 -4.1269 2.6856 24 6 -1.3274 -3.1642 3.4792 25 6 -1.0057 -1.8243 3.3125 26 6 -0.0989 -1.4372 2.3478 27 6 0.4968 -2.3923 1.5366 28 1 -0.4850 -0.8356 -0.0858 29 1 3.0276 -3.2674 -1.5935 30 1 2.2223 -6.0842 -0.6862 31 1 4.3600 -3.7877 -3.1987 32 1 5.7121 -5.2961 -4.8458 33 1 3.4506 -10.1773 -2.2066 34 1 -1.0018 -5.1675 2.8220 35 1 -2.0390 -3.4537 4.2382 36 1 -1.4687 -1.0794 3.9428 37 1 0.1463 -0.3928 2.2236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601079156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:33 Heat of formation + Delta-G solvation = -11.534304 kcal Electronic energy + Delta-G solvation = -25780.004006 eV Core-core repulsion = 21875.033411 eV Total energy + Delta-G solvation = -3904.970595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.75180 -42.76574 -41.09902 -38.13687 -37.38173 -36.58839 -35.91758 -33.03371 -32.88454 -31.55196 -31.07124 -29.38858 -26.94690 -26.12329 -24.54310 -23.16937 -22.98110 -22.34412 -21.37623 -20.52913 -19.62908 -19.47318 -18.63959 -17.98557 -17.70352 -17.52293 -16.85813 -16.46038 -16.41116 -16.19406 -15.67326 -15.10197 -15.04365 -14.94080 -14.76084 -14.51766 -14.12255 -13.96553 -13.53988 -13.06927 -12.87584 -12.81395 -12.73071 -12.69781 -12.56316 -12.11356 -12.06616 -11.93091 -11.87660 -11.58318 -10.83869 -10.72759 -10.37293 -9.78468 -9.50906 -8.90088 -8.58760 -6.57972 -0.89449 0.05181 0.78957 0.87714 1.38417 1.48771 1.53884 1.54792 1.76972 1.92223 2.13084 2.33361 2.38056 2.52026 2.83967 3.10690 3.35767 3.53633 3.70248 3.99848 4.15073 4.18674 4.26774 4.29239 4.44642 4.59757 4.65078 4.74126 4.75463 4.88138 5.04573 5.15696 5.16968 5.30617 5.33663 5.52286 5.53340 5.59039 5.70183 5.77937 5.87767 5.90326 6.21358 6.60194 6.77191 7.11290 7.24786 8.00282 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003827 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.885605 B = 7314.419711 C = 9370.008314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C -0.006 4.006 3 Si 1.133 2.867 4 H -0.268 1.268 5 H -0.250 1.250 6 H -0.274 1.274 7 C -0.449 4.449 8 H 0.116 0.884 9 N -0.293 5.293 10 C 0.189 3.811 11 C -0.037 4.037 12 C -0.088 4.088 13 C -0.032 4.032 14 C -0.240 4.240 15 C 0.054 3.946 16 O -0.149 6.149 17 C -0.108 4.108 18 C 0.566 3.434 19 O -0.525 6.525 20 O -0.491 6.491 21 N -0.531 5.531 22 C 0.009 3.991 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.134 4.134 26 C -0.094 4.094 27 C -0.025 4.025 28 H 0.268 0.732 29 H 0.146 0.854 30 H 0.125 0.875 31 H 0.179 0.821 32 H 0.272 0.728 33 H 0.433 0.567 34 H 0.132 0.868 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 -6.492 -6.208 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.217 4.217 3 Si 0.948 3.052 4 H -0.194 1.194 5 H -0.174 1.174 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.134 0.866 9 N 0.038 4.962 10 C -0.064 4.064 11 C -0.056 4.056 12 C -0.110 4.110 13 C -0.035 4.035 14 C -0.258 4.258 15 C -0.016 4.016 16 O -0.044 6.044 17 C -0.158 4.158 18 C 0.413 3.587 19 O -0.418 6.418 20 O -0.304 6.304 21 N -0.255 5.255 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.142 4.142 25 C -0.154 4.154 26 C -0.115 4.115 27 C -0.141 4.141 28 H 0.079 0.921 29 H 0.164 0.836 30 H 0.143 0.857 31 H 0.197 0.803 32 H 0.288 0.712 33 H 0.294 0.706 34 H 0.150 0.850 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.779 -5.548 -6.466 12.233 hybrid contribution -0.466 -1.244 0.367 1.378 sum 8.312 -6.792 -6.099 12.346 Atomic orbital electron populations 1.70678 1.08288 1.31587 1.35180 1.28447 0.95762 1.06138 0.91374 0.82747 0.74749 0.68921 0.78751 1.19356 1.17366 1.19846 1.21094 1.02243 0.87218 1.47134 0.86624 1.41642 1.27787 1.06606 1.20166 1.22083 1.02911 0.81123 1.00321 1.21004 0.94929 0.96501 0.93182 1.21477 0.97569 0.95669 0.96276 1.19951 0.96200 0.91770 0.95540 1.22292 1.02192 1.02542 0.98807 1.25365 0.98444 0.78172 0.99616 1.84134 1.49676 1.29999 1.40602 1.19908 1.05058 0.92939 0.97849 1.17649 0.77856 0.83279 0.79941 1.91067 1.34539 1.87630 1.28530 1.85053 1.68207 1.16605 1.60554 1.70267 1.12579 1.32314 1.10318 1.19391 1.02278 0.89692 1.00428 1.20442 0.96383 1.00409 0.94569 1.21097 1.01057 0.91802 1.00249 1.21135 0.98359 0.97228 0.98694 1.20370 0.98092 0.97420 0.95579 1.19382 1.01842 0.97153 0.95692 0.92107 0.83615 0.85706 0.80329 0.71223 0.70627 0.85005 0.82001 0.83203 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.46 11.46 21.69 0.25 -44.21 16 2 C -0.01 -0.32 4.35 84.99 0.37 0.05 16 3 Si 1.13 41.00 29.99 68.60 2.06 43.06 16 4 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.25 -7.94 7.11 99.48 0.71 -7.24 16 6 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 7 C -0.45 -23.03 9.42 84.12 0.79 -22.24 16 8 H 0.12 5.50 7.79 -2.91 -0.02 5.48 16 9 N -0.29 -15.90 2.71 -335.71 -0.91 -16.82 16 10 C 0.19 9.88 7.59 135.66 1.03 10.91 16 11 C -0.04 -1.57 9.31 23.66 0.22 -1.35 16 12 C -0.09 -3.50 9.22 23.78 0.22 -3.28 16 13 C -0.03 -1.02 6.16 -19.83 -0.12 -1.14 16 14 C -0.24 -5.38 10.22 22.33 0.23 -5.15 16 15 C 0.05 0.83 12.00 66.99 0.80 1.64 16 16 O -0.15 -3.36 10.63 -2.48 -0.03 -3.39 16 17 C -0.11 -3.13 7.07 23.45 0.17 -2.97 16 18 C 0.57 16.52 8.09 68.70 0.56 17.08 16 19 O -0.52 -19.11 15.47 19.23 0.30 -18.81 16 20 O -0.49 -10.09 13.54 -56.46 -0.76 -10.85 16 21 N -0.53 -28.78 10.72 -182.20 -1.95 -30.74 16 22 C 0.01 0.50 7.19 39.73 0.29 0.78 16 23 C -0.10 -4.21 10.11 22.55 0.23 -3.99 16 24 C -0.12 -4.41 10.01 22.26 0.22 -4.19 16 25 C -0.13 -5.24 10.03 22.33 0.22 -5.02 16 26 C -0.09 -4.57 8.37 22.32 0.19 -4.38 16 27 C -0.02 -1.34 5.58 38.87 0.22 -1.12 16 28 H 0.27 15.64 6.90 -92.71 -0.64 15.00 16 29 H 0.15 5.48 6.71 -2.91 -0.02 5.46 16 30 H 0.13 5.71 5.98 -2.91 -0.02 5.69 16 31 H 0.18 3.41 7.40 -2.91 -0.02 3.39 16 32 H 0.27 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.43 4.63 8.98 -74.06 -0.67 3.96 16 34 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 35 H 0.16 4.27 8.06 -2.91 -0.02 4.24 16 36 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.11 5.53 6.21 -2.91 -0.02 5.51 16 Total: -1.00 -77.17 332.77 5.20 -71.97 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.62 Total: 34.14 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 5.63 Total: -24.35 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -2.61 Total: -91.77 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.49 Total: -33.05 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.06 Total: 43.06 kcal Total: -77.17 5.20 -71.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.435 kcal (2) G-P(sol) polarization free energy of solvation -77.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds