Wall clock time and date at job start Tue Mar 31 2020 14:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31262 * 1 3 3 Si 1.86792 * 120.00392 * 2 1 4 4 H 1.48496 * 109.47378 * 240.00228 * 3 2 1 5 5 H 1.48507 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47304 * 120.00087 * 3 2 1 7 7 C 1.39133 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00108 * 189.67973 * 7 2 1 9 9 N 1.36878 * 119.99689 * 9.68291 * 7 2 1 10 10 C 1.37695 * 126.50975 * 219.04672 * 9 7 2 11 11 C 1.46394 * 125.23216 * 359.97438 * 10 9 7 12 12 C 1.35033 * 120.00023 * 186.18321 * 11 10 9 13 13 C 1.46843 * 119.99901 * 7.62130 * 12 11 10 14 14 C 1.41860 * 126.98885 * 41.71628 * 13 12 11 15 15 C 1.34615 * 107.10009 * 180.02562 * 14 13 12 16 16 O 1.33947 * 109.54498 * 0.02562 * 15 14 13 17 17 C 1.34939 * 109.82663 * 359.97438 * 16 15 14 18 18 C 1.41781 * 126.24806 * 180.02562 * 17 16 15 19 19 O 1.21671 * 119.99700 * 179.97438 * 18 17 16 20 20 O 1.34980 * 119.99751 * 359.97438 * 18 17 16 21 21 N 1.31559 * 109.53067 * 179.71835 * 10 9 7 22 22 C 1.34827 * 109.79679 * 0.24242 * 21 10 9 23 23 C 1.39984 * 133.19187 * 180.02562 * 22 21 10 24 24 C 1.37604 * 119.78539 * 179.97438 * 23 22 21 25 25 C 1.38807 * 120.55794 * 359.97438 * 24 23 22 26 26 C 1.37943 * 120.47139 * 359.97438 * 25 24 23 27 27 C 1.38278 * 126.51735 * 39.16712 * 9 7 2 28 28 H 0.96997 * 120.00140 * 4.97615 * 1 2 3 29 29 H 1.08004 * 120.00264 * 6.17890 * 11 10 9 30 30 H 1.08002 * 119.99851 * 187.61876 * 12 11 10 31 31 H 1.08002 * 126.44876 * 0.02721 * 14 13 12 32 32 H 1.07995 * 125.22788 * 179.74007 * 15 14 13 33 33 H 0.96697 * 113.99951 * 179.97438 * 20 18 17 34 34 H 1.07995 * 120.10912 * 359.97283 * 23 22 21 35 35 H 1.07998 * 119.72394 * 180.02562 * 24 23 22 36 36 H 1.07997 * 119.76231 * 179.97438 * 25 24 23 37 37 H 1.07997 * 120.06945 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6176 0.0000 4 1 3.1004 1.6963 -1.2125 5 1 1.2817 2.7464 0.0006 6 1 3.1005 1.6962 1.2125 7 6 2.0083 -1.2049 0.0005 8 1 3.0767 -1.2116 0.1578 9 7 1.3384 -2.3819 -0.1983 10 6 1.5750 -3.5775 0.4424 11 6 2.6006 -3.8003 1.4630 12 6 2.8253 -5.0458 1.9338 13 6 2.1639 -6.1977 1.3079 14 6 1.9774 -6.4245 -0.0800 15 6 1.3266 -7.5962 -0.2056 16 8 1.0955 -8.1129 1.0084 17 6 1.5903 -7.2910 1.9573 18 6 1.5372 -7.5006 3.3586 19 8 2.0230 -6.6807 4.1151 20 8 0.9479 -8.6096 3.8532 21 7 0.7340 -4.4875 0.0002 22 6 -0.0734 -3.9471 -0.9347 23 6 -1.1208 -4.4604 -1.7086 24 6 -1.7746 -3.6434 -2.6021 25 6 -1.4048 -2.3129 -2.7429 26 6 -0.3757 -1.7893 -1.9881 27 6 0.2972 -2.5969 -1.0824 28 1 -0.4850 0.8368 -0.0729 29 1 3.1775 -2.9685 1.8394 30 1 3.4916 -5.1946 2.7707 31 1 2.2972 -5.7787 -0.8843 32 1 1.0319 -8.0478 -1.1413 33 1 0.9610 -8.6647 4.8185 34 1 -1.4149 -5.4944 -1.6047 35 1 -2.5829 -4.0403 -3.1984 36 1 -1.9264 -1.6832 -3.4484 37 1 -0.0931 -0.7533 -2.1031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601079157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:36 Heat of formation + Delta-G solvation = 30.773235 kcal Electronic energy + Delta-G solvation = -26822.513896 eV Core-core repulsion = 22919.377893 eV Total energy + Delta-G solvation = -3903.136003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.14550 -40.79485 -39.72667 -36.42792 -36.00954 -34.82094 -33.88708 -31.49806 -31.05295 -29.91385 -29.21697 -27.62529 -25.38927 -24.47224 -22.97718 -21.40687 -21.09299 -20.85312 -19.85721 -18.62338 -18.10587 -17.69502 -16.98784 -16.39271 -16.07279 -15.61025 -15.47692 -14.81449 -14.68876 -14.33924 -14.13567 -13.74793 -13.46014 -13.12826 -12.90456 -12.77844 -12.48616 -12.24872 -12.05050 -11.61584 -11.47674 -11.44289 -11.16865 -11.00589 -10.89063 -10.84991 -10.64750 -10.51933 -9.94752 -9.70982 -9.07644 -8.93779 -8.17559 -8.05080 -7.34442 -6.74769 -6.73143 -4.71087 0.86924 1.67902 2.55679 2.65084 2.91171 2.92916 2.95127 2.96448 3.03428 3.52192 3.66594 3.70801 4.12763 4.44185 4.65947 5.00769 5.12589 5.17856 5.26516 5.61118 5.73894 5.88832 5.90429 5.93917 6.10778 6.22882 6.29903 6.45045 6.50874 6.59328 6.63909 6.77091 6.82033 6.87721 6.96518 7.03391 7.14216 7.33424 7.44121 7.55403 7.77037 7.96659 8.00776 8.05191 8.45187 9.05705 9.22679 10.07428 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.004633 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.502092 B = 6042.001236 C = 7480.268827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.054 3.946 3 Si 0.934 3.066 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.353 4.353 8 H 0.110 0.890 9 N -0.268 5.268 10 C 0.209 3.791 11 C -0.029 4.029 12 C -0.103 4.103 13 C 0.013 3.987 14 C -0.122 4.122 15 C -0.021 4.021 16 O -0.162 6.162 17 C -0.105 4.105 18 C 0.567 3.433 19 O -0.504 6.504 20 O -0.505 6.505 21 N -0.499 5.499 22 C 0.035 3.965 23 C -0.092 4.092 24 C -0.138 4.138 25 C -0.161 4.161 26 C -0.034 4.034 27 C 0.045 3.955 28 H 0.284 0.716 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.202 0.798 33 H 0.407 0.593 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -8.180 -0.535 8.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.160 4.160 3 Si 0.758 3.242 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.482 4.482 8 H 0.128 0.872 9 N 0.063 4.937 10 C -0.044 4.044 11 C -0.049 4.049 12 C -0.125 4.125 13 C 0.011 3.989 14 C -0.143 4.143 15 C -0.091 4.091 16 O -0.059 6.059 17 C -0.154 4.154 18 C 0.414 3.586 19 O -0.395 6.395 20 O -0.315 6.315 21 N -0.222 5.222 22 C -0.092 4.092 23 C -0.112 4.112 24 C -0.159 4.159 25 C -0.182 4.182 26 C -0.054 4.054 27 C -0.072 4.072 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.219 0.781 33 H 0.263 0.737 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.585 -8.682 -0.289 9.063 hybrid contribution 0.050 2.067 0.288 2.087 sum 2.635 -6.615 -0.001 7.120 Atomic orbital electron populations 1.69930 1.06487 1.29925 1.38535 1.25713 0.95562 1.00781 0.93955 0.85870 0.79314 0.79184 0.79859 1.18939 1.20075 1.18854 1.19711 0.93355 0.81814 1.53334 0.87216 1.41194 1.22474 1.07942 1.22103 1.21577 1.00125 0.83876 0.98869 1.21088 0.93783 0.96783 0.93240 1.21335 1.01468 0.89931 0.99766 1.19697 0.94482 0.91850 0.92893 1.21465 1.01753 0.95271 0.95774 1.23903 1.02460 0.96083 0.86620 1.84018 1.63244 1.44057 1.14608 1.19769 1.13085 0.95684 0.86895 1.17676 0.75253 0.79132 0.86510 1.90980 1.45553 1.44813 1.58169 1.85137 1.73781 1.43005 1.29570 1.70520 1.07821 1.29111 1.14728 1.18850 0.99235 0.91245 0.99825 1.19898 0.95740 0.98642 0.96946 1.20516 1.00796 0.94219 1.00360 1.20598 0.99558 0.95495 1.02546 1.20060 0.94109 0.98187 0.93055 1.18815 0.96778 0.95085 0.96508 0.90477 0.84596 0.84452 0.83276 0.78139 0.73674 0.87463 0.87452 0.87479 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.53 10.29 55.50 0.57 -19.95 16 2 C 0.05 1.26 4.86 -17.46 -0.08 1.17 16 3 Si 0.93 17.76 29.57 -169.99 -5.03 12.74 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 7 C -0.35 -8.55 9.48 -14.97 -0.14 -8.70 16 8 H 0.11 2.45 7.85 -52.49 -0.41 2.04 16 9 N -0.27 -6.71 2.85 -57.46 -0.16 -6.87 16 10 C 0.21 4.87 7.04 -154.05 -1.09 3.79 16 11 C -0.03 -0.58 9.79 -37.44 -0.37 -0.94 16 12 C -0.10 -1.86 9.03 -37.24 -0.34 -2.19 16 13 C 0.01 0.24 4.98 -104.56 -0.52 -0.28 16 14 C -0.12 -2.11 7.40 -39.48 -0.29 -2.40 16 15 C -0.02 -0.32 12.00 29.45 0.35 0.03 16 16 O -0.16 -2.71 10.63 1.82 0.02 -2.69 16 17 C -0.11 -1.87 7.07 -37.76 -0.27 -2.13 16 18 C 0.57 9.31 8.09 32.09 0.26 9.57 16 19 O -0.50 -9.04 16.03 -19.39 -0.31 -9.35 16 20 O -0.50 -6.53 13.54 -43.91 -0.59 -7.12 16 21 N -0.50 -11.50 5.99 -8.94 -0.05 -11.55 16 22 C 0.04 0.83 7.19 -84.93 -0.61 0.22 16 23 C -0.09 -1.89 10.11 -39.16 -0.40 -2.28 16 24 C -0.14 -2.60 10.01 -39.60 -0.40 -2.99 16 25 C -0.16 -3.20 10.03 -39.48 -0.40 -3.60 16 26 C -0.03 -0.79 8.51 -39.50 -0.34 -1.12 16 27 C 0.04 1.11 6.10 -83.80 -0.51 0.60 16 28 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.14 2.42 7.91 -52.48 -0.42 2.00 16 30 H 0.14 2.21 7.53 -52.49 -0.39 1.82 16 31 H 0.15 2.70 7.25 -52.49 -0.38 2.32 16 32 H 0.20 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.41 3.08 8.98 45.56 0.41 3.49 16 34 H 0.11 1.96 8.06 -52.49 -0.42 1.53 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.12 2.74 6.42 -52.49 -0.34 2.41 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -30.69 328.40 -8.09 -38.79 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -2.36 Total: 12.34 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -5.13 Total: -11.27 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.35 Total: -38.38 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.89 Total: -19.16 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.69 -8.09 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.561 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds