Wall clock time and date at job start Tue Mar 31 2020 14:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31262 * 1 3 3 Si 1.86792 * 120.00392 * 2 1 4 4 H 1.48496 * 109.47378 * 240.00228 * 3 2 1 5 5 H 1.48507 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47304 * 120.00087 * 3 2 1 7 7 C 1.39133 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00108 * 189.67973 * 7 2 1 9 9 N 1.36878 * 119.99689 * 9.68291 * 7 2 1 10 10 C 1.37695 * 126.50975 * 219.04672 * 9 7 2 11 11 C 1.46394 * 125.23216 * 359.97438 * 10 9 7 12 12 C 1.35033 * 120.00023 * 186.18321 * 11 10 9 13 13 C 1.46843 * 119.99901 * 7.62130 * 12 11 10 14 14 C 1.41860 * 126.98885 * 41.71628 * 13 12 11 15 15 C 1.34615 * 107.10009 * 180.02562 * 14 13 12 16 16 O 1.33947 * 109.54498 * 0.02562 * 15 14 13 17 17 C 1.34939 * 109.82663 * 359.97438 * 16 15 14 18 18 C 1.41781 * 126.24806 * 180.02562 * 17 16 15 19 19 O 1.21671 * 119.99700 * 179.97438 * 18 17 16 20 20 O 1.34980 * 119.99751 * 359.97438 * 18 17 16 21 21 N 1.31559 * 109.53067 * 179.71835 * 10 9 7 22 22 C 1.34827 * 109.79679 * 0.24242 * 21 10 9 23 23 C 1.39984 * 133.19187 * 180.02562 * 22 21 10 24 24 C 1.37604 * 119.78539 * 179.97438 * 23 22 21 25 25 C 1.38807 * 120.55794 * 359.97438 * 24 23 22 26 26 C 1.37943 * 120.47139 * 359.97438 * 25 24 23 27 27 C 1.38278 * 126.51735 * 39.16712 * 9 7 2 28 28 H 0.96997 * 120.00140 * 4.97615 * 1 2 3 29 29 H 1.08004 * 120.00264 * 6.17890 * 11 10 9 30 30 H 1.08002 * 119.99851 * 187.61876 * 12 11 10 31 31 H 1.08002 * 126.44876 * 0.02721 * 14 13 12 32 32 H 1.07995 * 125.22788 * 179.74007 * 15 14 13 33 33 H 0.96697 * 113.99951 * 179.97438 * 20 18 17 34 34 H 1.07995 * 120.10912 * 359.97283 * 23 22 21 35 35 H 1.07998 * 119.72394 * 180.02562 * 24 23 22 36 36 H 1.07997 * 119.76231 * 179.97438 * 25 24 23 37 37 H 1.07997 * 120.06945 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6176 0.0000 4 1 3.1004 1.6963 -1.2125 5 1 1.2817 2.7464 0.0006 6 1 3.1005 1.6962 1.2125 7 6 2.0083 -1.2049 0.0005 8 1 3.0767 -1.2116 0.1578 9 7 1.3384 -2.3819 -0.1983 10 6 1.5750 -3.5775 0.4424 11 6 2.6006 -3.8003 1.4630 12 6 2.8253 -5.0458 1.9338 13 6 2.1639 -6.1977 1.3079 14 6 1.9774 -6.4245 -0.0800 15 6 1.3266 -7.5962 -0.2056 16 8 1.0955 -8.1129 1.0084 17 6 1.5903 -7.2910 1.9573 18 6 1.5372 -7.5006 3.3586 19 8 2.0230 -6.6807 4.1151 20 8 0.9479 -8.6096 3.8532 21 7 0.7340 -4.4875 0.0002 22 6 -0.0734 -3.9471 -0.9347 23 6 -1.1208 -4.4604 -1.7086 24 6 -1.7746 -3.6434 -2.6021 25 6 -1.4048 -2.3129 -2.7429 26 6 -0.3757 -1.7893 -1.9881 27 6 0.2972 -2.5969 -1.0824 28 1 -0.4850 0.8368 -0.0729 29 1 3.1775 -2.9685 1.8394 30 1 3.4916 -5.1946 2.7707 31 1 2.2972 -5.7787 -0.8843 32 1 1.0319 -8.0478 -1.1413 33 1 0.9610 -8.6647 4.8185 34 1 -1.4149 -5.4944 -1.6047 35 1 -2.5829 -4.0403 -3.1984 36 1 -1.9264 -1.6832 -3.4484 37 1 -0.0931 -0.7533 -2.1031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601079157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:36 Heat of formation + Delta-G solvation = 14.335878 kcal Electronic energy + Delta-G solvation = -26823.226673 eV Core-core repulsion = 22919.377893 eV Total energy + Delta-G solvation = -3903.848780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.47190 -42.46503 -40.95631 -37.99632 -37.23894 -36.39827 -35.46133 -33.17493 -32.51096 -31.25921 -30.84976 -29.22637 -27.14841 -25.83129 -24.41359 -22.96969 -22.63557 -22.35668 -21.31958 -20.13753 -19.50514 -19.10601 -18.40684 -17.88742 -17.42922 -17.26646 -16.85534 -16.37028 -15.98830 -15.83658 -15.76690 -15.24398 -14.75429 -14.67680 -14.51998 -14.27882 -13.88719 -13.75967 -13.53102 -13.27401 -13.00050 -12.71571 -12.62674 -12.52745 -12.40892 -12.37718 -12.09041 -11.99508 -11.44912 -11.37484 -10.74294 -10.59098 -9.67729 -9.44998 -9.04872 -8.45417 -8.36658 -6.53116 -0.52184 0.17430 1.02683 1.03932 1.35348 1.41751 1.47932 1.65262 1.79946 2.07995 2.16006 2.43456 2.53821 2.78870 2.92317 3.33625 3.60164 3.75672 4.01742 4.16930 4.34495 4.40583 4.46857 4.59410 4.62639 4.85547 4.88100 4.96542 4.99835 5.07734 5.12974 5.28251 5.32218 5.40497 5.44808 5.50354 5.62008 5.81491 5.91321 6.05328 6.11345 6.25316 6.40430 6.70045 6.88522 7.33389 7.48723 8.35239 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.004633 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.502092 B = 6042.001236 C = 7480.268827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.015 3.985 3 Si 1.004 2.996 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.380 4.380 8 H 0.116 0.884 9 N -0.293 5.293 10 C 0.198 3.802 11 C -0.059 4.059 12 C -0.076 4.076 13 C -0.013 4.013 14 C -0.143 4.143 15 C 0.004 3.996 16 O -0.160 6.160 17 C -0.117 4.117 18 C 0.571 3.429 19 O -0.525 6.525 20 O -0.495 6.495 21 N -0.497 5.497 22 C 0.007 3.993 23 C -0.098 4.098 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.065 4.065 27 C 0.013 3.987 28 H 0.285 0.715 29 H 0.146 0.854 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.247 0.753 33 H 0.431 0.569 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 -9.697 -1.102 9.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.508 4.508 8 H 0.134 0.866 9 N 0.037 4.963 10 C -0.057 4.057 11 C -0.078 4.078 12 C -0.098 4.098 13 C -0.016 4.016 14 C -0.163 4.163 15 C -0.065 4.065 16 O -0.057 6.057 17 C -0.166 4.166 18 C 0.419 3.581 19 O -0.419 6.419 20 O -0.308 6.308 21 N -0.220 5.220 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.149 4.149 25 C -0.171 4.171 26 C -0.086 4.086 27 C -0.102 4.102 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.174 0.826 31 H 0.153 0.847 32 H 0.263 0.737 33 H 0.291 0.709 34 H 0.150 0.850 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.859 -10.240 -0.842 10.442 hybrid contribution 0.209 2.280 0.443 2.332 sum 2.068 -7.960 -0.399 8.234 Atomic orbital electron populations 1.70045 1.08043 1.30577 1.40154 1.26622 0.96184 1.03701 0.92962 0.84844 0.77951 0.74741 0.80084 1.18355 1.19930 1.18089 1.20079 0.93907 0.82449 1.54392 0.86648 1.41417 1.23269 1.08495 1.23080 1.22218 1.00677 0.83639 0.99135 1.21211 0.94670 0.97967 0.93993 1.21605 1.00009 0.89385 0.98791 1.19920 0.95565 0.92332 0.93785 1.21399 1.03412 0.96483 0.95036 1.24672 0.99696 0.94881 0.87268 1.84038 1.62790 1.43863 1.15011 1.19972 1.13293 0.95577 0.87803 1.17550 0.75007 0.79516 0.86032 1.90969 1.46615 1.45758 1.58551 1.85081 1.72634 1.41141 1.31923 1.70596 1.07798 1.28885 1.14683 1.19424 1.00483 0.91181 1.00827 1.20292 0.94804 1.00109 0.96537 1.20985 1.00981 0.93311 0.99612 1.21031 0.97946 0.96582 1.01519 1.20149 0.96110 0.97642 0.94692 1.19300 0.97355 0.96250 0.97333 0.90522 0.83608 0.82587 0.84686 0.73743 0.70872 0.85036 0.82936 0.84399 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.71 10.29 21.69 0.22 -44.49 16 2 C 0.01 0.72 4.86 84.99 0.41 1.13 16 3 Si 1.00 37.29 29.57 68.60 2.03 39.32 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.38 -19.25 9.48 84.12 0.80 -18.45 16 8 H 0.12 5.41 7.85 -2.91 -0.02 5.39 16 9 N -0.29 -15.29 2.85 -335.70 -0.96 -16.24 16 10 C 0.20 9.56 7.04 135.66 0.96 10.51 16 11 C -0.06 -2.40 9.79 23.66 0.23 -2.17 16 12 C -0.08 -2.76 9.03 23.78 0.21 -2.55 16 13 C -0.01 -0.49 4.98 -19.83 -0.10 -0.59 16 14 C -0.14 -4.85 7.40 22.34 0.17 -4.69 16 15 C 0.00 0.10 12.00 66.99 0.80 0.91 16 16 O -0.16 -4.99 10.63 -2.53 -0.03 -5.01 16 17 C -0.12 -4.00 7.07 23.45 0.17 -3.84 16 18 C 0.57 17.92 8.09 68.70 0.56 18.47 16 19 O -0.53 -18.33 16.03 19.27 0.31 -18.02 16 20 O -0.50 -11.63 13.54 -56.45 -0.76 -12.39 16 21 N -0.50 -23.27 5.99 -182.21 -1.09 -24.36 16 22 C 0.01 0.32 7.19 39.73 0.29 0.60 16 23 C -0.10 -3.82 10.11 22.54 0.23 -3.60 16 24 C -0.13 -4.46 10.01 22.26 0.22 -4.24 16 25 C -0.15 -5.77 10.03 22.34 0.22 -5.55 16 26 C -0.07 -3.10 8.51 22.32 0.19 -2.91 16 27 C 0.01 0.68 6.10 38.87 0.24 0.92 16 28 H 0.28 13.79 8.31 -92.71 -0.77 13.01 16 29 H 0.15 5.43 7.91 -2.91 -0.02 5.41 16 30 H 0.16 4.97 7.53 -2.91 -0.02 4.94 16 31 H 0.14 4.98 7.25 -2.91 -0.02 4.96 16 32 H 0.25 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.43 5.39 8.98 -74.06 -0.67 4.73 16 34 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.10 4.91 6.42 -2.91 -0.02 4.89 16 Total: -1.00 -69.16 328.40 5.80 -63.37 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.48 Total: 33.87 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 5.59 Total: -16.04 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.83 Total: -85.09 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.48 Total: -35.43 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -69.16 5.80 -63.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.704 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds