Wall clock time and date at job start Tue Mar 31 2020 14:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31260 * 1 3 3 Si 1.86797 * 120.00027 * 2 1 4 4 H 1.48507 * 109.46686 * 275.34835 * 3 2 1 5 5 H 1.48496 * 109.47262 * 35.34841 * 3 2 1 6 6 H 1.48502 * 109.47148 * 155.35627 * 3 2 1 7 7 C 1.39129 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00198 * 336.20477 * 7 2 1 9 9 N 1.36848 * 119.99878 * 156.19793 * 7 2 1 10 10 C 1.37732 * 126.51050 * 138.44992 * 9 7 2 11 11 C 1.46234 * 125.24647 * 359.74083 * 10 9 7 12 12 C 1.35390 * 120.00133 * 185.77020 * 11 10 9 13 13 C 1.46114 * 120.00097 * 180.02562 * 12 11 10 14 14 C 1.38325 * 125.81782 * 179.72255 * 13 12 11 15 15 C 1.39523 * 106.91094 * 179.84145 * 14 13 12 16 16 C 1.38026 * 106.92385 * 0.41409 * 15 14 13 17 17 C 1.46374 * 125.79694 * 179.77623 * 16 15 14 18 18 O 1.21645 * 119.99968 * 359.97438 * 17 16 15 19 19 O 1.34932 * 119.99868 * 179.97438 * 17 16 15 20 20 O 1.34576 * 125.81273 * 0.02562 * 13 12 11 21 21 N 1.31642 * 109.51324 * 179.74148 * 10 9 7 22 22 C 1.34809 * 109.78413 * 359.97438 * 21 10 9 23 23 C 1.39999 * 133.17634 * 180.02562 * 22 21 10 24 24 C 1.37604 * 119.78468 * 179.97438 * 23 22 21 25 25 C 1.38811 * 120.55519 * 359.97438 * 24 23 22 26 26 C 1.37948 * 120.47644 * 0.04177 * 25 24 23 27 27 C 1.38255 * 126.51484 * 318.14375 * 9 7 2 28 28 H 0.97009 * 120.00154 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99681 * 5.77420 * 11 10 9 30 30 H 1.07995 * 120.00299 * 0.02562 * 12 11 10 31 31 H 1.08006 * 126.54152 * 359.97438 * 14 13 12 32 32 H 1.08003 * 126.54046 * 180.14783 * 15 14 13 33 33 H 0.96701 * 114.00181 * 180.02562 * 19 17 16 34 34 H 1.08001 * 120.10847 * 359.97438 * 23 22 21 35 35 H 1.07999 * 119.72187 * 180.02562 * 24 23 22 36 36 H 1.07994 * 119.75765 * 180.02562 * 25 24 23 37 37 H 1.07996 * 120.06179 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3810 2.1116 -1.3941 5 1 1.5052 2.6174 0.8100 6 1 3.5962 1.4101 0.5838 7 6 2.0082 -1.2049 0.0005 8 1 1.5370 -2.1003 0.3783 9 7 3.2894 -1.2555 -0.4777 10 6 4.3437 -1.9482 0.0751 11 6 4.2767 -2.7578 1.2910 12 6 5.4051 -3.3001 1.8064 13 6 5.3380 -4.1095 3.0210 14 6 6.4094 -4.7224 3.6455 15 6 5.9025 -5.3843 4.7643 16 6 4.5404 -5.1618 4.7799 17 6 3.6005 -5.6746 5.7780 18 8 4.0038 -6.3636 6.6958 19 8 2.2867 -5.3830 5.6800 20 8 4.2225 -4.3906 3.7194 21 7 5.4212 -1.7690 -0.6597 22 6 5.1322 -0.9694 -1.7058 23 6 5.8935 -0.4717 -2.7701 24 6 5.3048 0.3439 -3.7090 25 6 3.9609 0.6776 -3.6107 26 6 3.1951 0.1970 -2.5688 27 6 3.7699 -0.6259 -1.6109 28 1 -0.4851 0.8401 -0.0004 29 1 3.3269 -2.9233 1.7779 30 1 6.3549 -3.1343 1.3198 31 1 7.4415 -4.6922 3.3289 32 1 6.4675 -5.9642 5.4791 33 1 1.7454 -5.7653 6.3843 34 1 6.9396 -0.7271 -2.8539 35 1 5.8929 0.7269 -4.5299 36 1 3.5119 1.3184 -4.3550 37 1 2.1504 0.4612 -2.4986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601079496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:21 Heat of formation + Delta-G solvation = 13.241882 kcal Electronic energy + Delta-G solvation = -25450.614162 eV Core-core repulsion = 21546.717943 eV Total energy + Delta-G solvation = -3903.896219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.54855 -41.21259 -40.05367 -36.67236 -36.32752 -34.54754 -33.83323 -33.11189 -32.11789 -29.99325 -29.55641 -27.83505 -25.51544 -25.00526 -22.79202 -21.77015 -21.41960 -21.08600 -20.32452 -19.02467 -18.46694 -18.16905 -17.74095 -16.74233 -16.57121 -15.99412 -15.25045 -15.21364 -15.03398 -14.71399 -14.37147 -13.90505 -13.56110 -13.34927 -13.24075 -13.17187 -13.13614 -12.90519 -12.25400 -11.91091 -11.81947 -11.65420 -11.43273 -11.33914 -11.13655 -11.09382 -10.57428 -10.46593 -10.30596 -10.11815 -9.93141 -9.20305 -9.03055 -8.33077 -7.55628 -7.18098 -7.07097 -4.79446 0.35793 1.28197 1.94362 2.30465 2.37032 2.74734 2.82058 2.90572 2.98695 3.07119 3.19897 3.70780 3.76898 3.91658 4.43322 4.61573 4.65401 4.76372 4.93916 5.08837 5.44127 5.46683 5.52227 5.58324 5.63939 5.75089 5.88004 6.07506 6.11640 6.14734 6.19447 6.27451 6.38660 6.49792 6.69212 6.75762 6.93271 7.00871 7.14879 7.30610 7.36933 7.61781 7.64409 7.73716 8.29707 8.73441 8.84794 9.86675 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003387 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.145618 B = 8264.916263 C = 9695.479334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.088 3.912 3 Si 0.869 3.131 4 H -0.245 1.245 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.353 4.353 8 H 0.126 0.874 9 N -0.278 5.278 10 C 0.210 3.790 11 C 0.007 3.993 12 C -0.116 4.116 13 C 0.101 3.899 14 C -0.224 4.224 15 C -0.090 4.090 16 C -0.098 4.098 17 C 0.570 3.430 18 O -0.505 6.505 19 O -0.493 6.493 20 O -0.143 6.143 21 N -0.502 5.502 22 C 0.049 3.951 23 C -0.081 4.081 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.082 4.082 27 C 0.003 3.997 28 H 0.291 0.709 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.413 0.587 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -4.025 3.821 8.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.129 4.129 3 Si 0.692 3.308 4 H -0.169 1.169 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.482 4.482 8 H 0.144 0.856 9 N 0.052 4.948 10 C -0.042 4.042 11 C -0.013 4.013 12 C -0.138 4.138 13 C 0.047 3.953 14 C -0.243 4.243 15 C -0.110 4.110 16 C -0.148 4.148 17 C 0.415 3.585 18 O -0.396 6.396 19 O -0.303 6.303 20 O -0.039 6.039 21 N -0.225 5.225 22 C -0.080 4.080 23 C -0.101 4.101 24 C -0.156 4.156 25 C -0.162 4.162 26 C -0.102 4.102 27 C -0.113 4.113 28 H 0.102 0.898 29 H 0.156 0.844 30 H 0.181 0.819 31 H 0.182 0.818 32 H 0.181 0.819 33 H 0.271 0.729 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.863 -4.209 3.979 8.981 hybrid contribution -1.038 0.907 0.435 1.446 sum 5.825 -3.302 4.414 8.020 Atomic orbital electron populations 1.69701 1.06791 1.30290 1.36461 1.25476 0.95200 0.99627 0.92614 0.86921 0.81271 0.81786 0.80844 1.16885 1.20086 1.17972 1.19368 0.85325 0.98769 1.44700 0.85636 1.41486 1.08074 1.31084 1.14113 1.21348 0.82765 1.03113 0.96964 1.21219 0.98875 0.90978 0.90228 1.21143 1.00484 0.99966 0.92193 1.21633 0.83276 0.97155 0.93211 1.22070 1.00197 1.04332 0.97727 1.22030 0.91523 0.99049 0.98357 1.20821 0.93348 1.07201 0.93419 1.18879 0.81002 0.76602 0.82012 1.90991 1.79140 1.36907 1.32570 1.85152 1.19034 1.71711 1.54390 1.84241 1.34409 1.53437 1.31764 1.70272 1.25263 1.20485 1.06456 1.18748 0.91760 1.00464 0.96983 1.20074 0.98594 0.98558 0.92889 1.20636 0.95011 1.00615 0.99368 1.20621 0.94247 1.02778 0.98592 1.20093 0.99760 0.96954 0.93374 1.19034 0.95948 1.04799 0.91484 0.89842 0.84416 0.81942 0.81836 0.81891 0.72924 0.86462 0.86533 0.86538 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.05 13.95 55.50 0.77 -19.28 16 2 C 0.09 2.16 4.88 -17.47 -0.09 2.08 16 3 Si 0.87 19.42 24.75 -169.99 -4.21 15.21 16 4 H -0.24 -5.19 5.75 56.52 0.32 -4.87 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.35 -8.82 9.81 -14.98 -0.15 -8.96 16 8 H 0.13 3.21 8.06 -52.48 -0.42 2.78 16 9 N -0.28 -6.72 2.41 -57.49 -0.14 -6.86 16 10 C 0.21 4.68 7.59 -154.01 -1.17 3.51 16 11 C 0.01 0.13 9.41 -37.39 -0.35 -0.22 16 12 C -0.12 -1.83 9.71 -37.44 -0.36 -2.19 16 13 C 0.10 1.47 7.02 -36.39 -0.26 1.22 16 14 C -0.22 -2.72 10.87 -39.07 -0.42 -3.14 16 15 C -0.09 -1.09 10.63 -39.18 -0.42 -1.51 16 16 C -0.10 -1.38 7.20 -36.39 -0.26 -1.64 16 17 C 0.57 7.50 8.27 34.00 0.28 7.78 16 18 O -0.51 -7.23 17.60 -19.38 -0.34 -7.57 16 19 O -0.49 -5.52 13.56 -42.71 -0.58 -6.10 16 20 O -0.14 -2.26 10.30 2.83 0.03 -2.23 16 21 N -0.50 -11.16 10.73 -8.96 -0.10 -11.26 16 22 C 0.05 1.09 7.19 -84.93 -0.61 0.48 16 23 C -0.08 -1.51 10.11 -39.15 -0.40 -1.91 16 24 C -0.14 -2.26 10.01 -39.60 -0.40 -2.66 16 25 C -0.14 -2.54 10.03 -39.48 -0.40 -2.93 16 26 C -0.08 -1.75 7.09 -39.50 -0.28 -2.03 16 27 C 0.00 0.07 5.28 -83.80 -0.44 -0.37 16 28 H 0.29 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.14 2.54 7.63 -52.48 -0.40 2.14 16 30 H 0.16 2.43 7.70 -52.49 -0.40 2.02 16 31 H 0.16 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.16 1.60 8.06 -52.48 -0.42 1.17 16 33 H 0.41 2.37 8.98 45.56 0.41 2.78 16 34 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.12 2.56 6.11 -52.49 -0.32 2.24 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -29.65 335.41 -7.68 -37.34 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -2.46 Total: 8.20 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -5.71 Total: -12.50 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.54 Total: -37.39 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.89 Total: -15.90 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.21 Total: 15.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.65 -7.68 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.579 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds