Wall clock time and date at job start Tue Mar 31 2020 14:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31260 * 1 3 3 Si 1.86797 * 120.00027 * 2 1 4 4 H 1.48507 * 109.46686 * 275.34835 * 3 2 1 5 5 H 1.48496 * 109.47262 * 35.34841 * 3 2 1 6 6 H 1.48502 * 109.47148 * 155.35627 * 3 2 1 7 7 C 1.39129 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00198 * 336.20477 * 7 2 1 9 9 N 1.36848 * 119.99878 * 156.19793 * 7 2 1 10 10 C 1.37732 * 126.51050 * 138.44992 * 9 7 2 11 11 C 1.46234 * 125.24647 * 359.74083 * 10 9 7 12 12 C 1.35390 * 120.00133 * 185.77020 * 11 10 9 13 13 C 1.46114 * 120.00097 * 180.02562 * 12 11 10 14 14 C 1.38325 * 125.81782 * 179.72255 * 13 12 11 15 15 C 1.39523 * 106.91094 * 179.84145 * 14 13 12 16 16 C 1.38026 * 106.92385 * 0.41409 * 15 14 13 17 17 C 1.46374 * 125.79694 * 179.77623 * 16 15 14 18 18 O 1.21645 * 119.99968 * 359.97438 * 17 16 15 19 19 O 1.34932 * 119.99868 * 179.97438 * 17 16 15 20 20 O 1.34576 * 125.81273 * 0.02562 * 13 12 11 21 21 N 1.31642 * 109.51324 * 179.74148 * 10 9 7 22 22 C 1.34809 * 109.78413 * 359.97438 * 21 10 9 23 23 C 1.39999 * 133.17634 * 180.02562 * 22 21 10 24 24 C 1.37604 * 119.78468 * 179.97438 * 23 22 21 25 25 C 1.38811 * 120.55519 * 359.97438 * 24 23 22 26 26 C 1.37948 * 120.47644 * 0.04177 * 25 24 23 27 27 C 1.38255 * 126.51484 * 318.14375 * 9 7 2 28 28 H 0.97009 * 120.00154 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99681 * 5.77420 * 11 10 9 30 30 H 1.07995 * 120.00299 * 0.02562 * 12 11 10 31 31 H 1.08006 * 126.54152 * 359.97438 * 14 13 12 32 32 H 1.08003 * 126.54046 * 180.14783 * 15 14 13 33 33 H 0.96701 * 114.00181 * 180.02562 * 19 17 16 34 34 H 1.08001 * 120.10847 * 359.97438 * 23 22 21 35 35 H 1.07999 * 119.72187 * 180.02562 * 24 23 22 36 36 H 1.07994 * 119.75765 * 180.02562 * 25 24 23 37 37 H 1.07996 * 120.06179 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3810 2.1116 -1.3941 5 1 1.5052 2.6174 0.8100 6 1 3.5962 1.4101 0.5838 7 6 2.0082 -1.2049 0.0005 8 1 1.5370 -2.1003 0.3783 9 7 3.2894 -1.2555 -0.4777 10 6 4.3437 -1.9482 0.0751 11 6 4.2767 -2.7578 1.2910 12 6 5.4051 -3.3001 1.8064 13 6 5.3380 -4.1095 3.0210 14 6 6.4094 -4.7224 3.6455 15 6 5.9025 -5.3843 4.7643 16 6 4.5404 -5.1618 4.7799 17 6 3.6005 -5.6746 5.7780 18 8 4.0038 -6.3636 6.6958 19 8 2.2867 -5.3830 5.6800 20 8 4.2225 -4.3906 3.7194 21 7 5.4212 -1.7690 -0.6597 22 6 5.1322 -0.9694 -1.7058 23 6 5.8935 -0.4717 -2.7701 24 6 5.3048 0.3439 -3.7090 25 6 3.9609 0.6776 -3.6107 26 6 3.1951 0.1970 -2.5688 27 6 3.7699 -0.6259 -1.6109 28 1 -0.4851 0.8401 -0.0004 29 1 3.3269 -2.9233 1.7779 30 1 6.3549 -3.1343 1.3198 31 1 7.4415 -4.6922 3.3289 32 1 6.4675 -5.9642 5.4791 33 1 1.7454 -5.7653 6.3843 34 1 6.9396 -0.7271 -2.8539 35 1 5.8929 0.7269 -4.5299 36 1 3.5119 1.3184 -4.3550 37 1 2.1504 0.4612 -2.4986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601079496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:21 Heat of formation + Delta-G solvation = -4.366919 kcal Electronic energy + Delta-G solvation = -25451.377737 eV Core-core repulsion = 21546.717943 eV Total energy + Delta-G solvation = -3904.659794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.66489 -42.83385 -41.07903 -38.16748 -37.32448 -36.21806 -35.24181 -34.19935 -33.84298 -31.28324 -31.03587 -29.23744 -27.26699 -26.26046 -24.02558 -23.20454 -22.67433 -22.45907 -21.65236 -20.51779 -19.86563 -19.44249 -18.82208 -18.19994 -17.70872 -17.67483 -16.57703 -16.40847 -16.33884 -16.30530 -16.07859 -15.04549 -14.94906 -14.85604 -14.84023 -14.54194 -14.25014 -14.10874 -13.49356 -13.46952 -13.23553 -13.07992 -12.80432 -12.73744 -12.66547 -12.26577 -12.16758 -12.06560 -11.87624 -11.54174 -11.07099 -10.90513 -10.76592 -9.63154 -9.12712 -8.99512 -8.54283 -6.66639 -0.87318 -0.00482 0.61987 0.80166 1.08396 1.14731 1.25601 1.33049 1.56494 1.76517 1.93432 2.12001 2.21083 2.34839 2.68361 3.07660 3.25788 3.56689 3.75954 3.95977 4.09820 4.16653 4.28658 4.35601 4.45315 4.56666 4.58530 4.65595 4.70706 4.87464 4.93987 5.02781 5.19011 5.24704 5.31297 5.36350 5.43011 5.63718 5.68628 5.82078 5.83703 5.90755 6.17188 6.50201 6.72495 7.02753 7.15121 8.10855 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003387 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.145618 B = 8264.916263 C = 9695.479334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.065 3.935 3 Si 0.914 3.086 4 H -0.226 1.226 5 H -0.264 1.264 6 H -0.286 1.286 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.216 3.784 11 C -0.047 4.047 12 C -0.057 4.057 13 C 0.058 3.942 14 C -0.185 4.185 15 C -0.084 4.084 16 C -0.110 4.110 17 C 0.574 3.426 18 O -0.517 6.517 19 O -0.497 6.497 20 O -0.166 6.166 21 N -0.509 5.509 22 C 0.020 3.980 23 C -0.084 4.084 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.019 4.019 28 H 0.297 0.703 29 H 0.125 0.875 30 H 0.178 0.822 31 H 0.201 0.799 32 H 0.193 0.807 33 H 0.435 0.565 34 H 0.146 0.854 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.899 -3.955 3.220 11.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.149 1.149 5 H -0.189 1.189 6 H -0.212 1.212 7 C -0.503 4.503 8 H 0.115 0.885 9 N 0.020 4.980 10 C -0.038 4.038 11 C -0.067 4.067 12 C -0.078 4.078 13 C 0.005 3.995 14 C -0.204 4.204 15 C -0.104 4.104 16 C -0.160 4.160 17 C 0.420 3.580 18 O -0.409 6.409 19 O -0.310 6.310 20 O -0.062 6.062 21 N -0.232 5.232 22 C -0.107 4.107 23 C -0.103 4.103 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.133 4.133 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.195 0.805 31 H 0.218 0.782 32 H 0.210 0.790 33 H 0.297 0.703 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.172 0.828 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.215 -4.122 3.348 11.513 hybrid contribution -1.798 0.625 0.729 2.039 sum 8.417 -3.497 4.077 9.985 Atomic orbital electron populations 1.69724 1.07511 1.31085 1.39124 1.25848 0.95527 1.01204 0.92245 0.86299 0.78685 0.79835 0.81599 1.14902 1.18914 1.21164 1.19070 0.86485 0.98205 1.46502 0.88492 1.41502 1.08016 1.33118 1.15406 1.21963 0.82698 1.01798 0.97372 1.21073 0.99745 0.94823 0.91061 1.21349 0.99676 0.95855 0.90965 1.21665 0.84150 0.99614 0.94034 1.22559 1.00938 1.00894 0.96002 1.22461 0.90691 0.98584 0.98621 1.21380 0.94772 1.06765 0.93101 1.18808 0.81435 0.76222 0.81583 1.90985 1.79490 1.37482 1.32951 1.85127 1.18640 1.71688 1.55565 1.84224 1.35428 1.54079 1.32496 1.70264 1.25107 1.21034 1.06803 1.19382 0.91946 1.01219 0.98110 1.20557 0.99821 0.98107 0.91851 1.21196 0.94642 0.98736 0.99675 1.21182 0.94703 1.00939 0.97241 1.20261 0.99825 0.99066 0.95095 1.19545 0.96789 1.05071 0.91913 0.89222 0.85683 0.80489 0.78205 0.79019 0.70327 0.83605 0.81447 0.82819 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.74 13.95 21.69 0.30 -44.44 16 2 C 0.07 3.42 4.88 84.99 0.41 3.83 16 3 Si 0.91 41.77 24.75 68.60 1.70 43.47 16 4 H -0.23 -9.48 5.75 99.48 0.57 -8.91 16 5 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 7 C -0.37 -20.36 9.81 84.12 0.83 -19.54 16 8 H 0.10 5.57 8.06 -2.91 -0.02 5.54 16 9 N -0.31 -15.85 2.41 -335.80 -0.81 -16.66 16 10 C 0.22 10.11 7.59 135.58 1.03 11.14 16 11 C -0.05 -1.87 9.41 23.69 0.22 -1.65 16 12 C -0.06 -1.78 9.71 23.66 0.23 -1.55 16 13 C 0.06 1.62 7.02 24.34 0.17 1.79 16 14 C -0.19 -3.83 10.87 22.60 0.25 -3.59 16 15 C -0.08 -1.78 10.63 22.53 0.24 -1.54 16 16 C -0.11 -2.96 7.20 24.34 0.18 -2.79 16 17 C 0.57 14.49 8.27 69.94 0.58 15.07 16 18 O -0.52 -13.97 17.60 19.36 0.34 -13.63 16 19 O -0.50 -10.87 13.56 -56.97 -0.77 -11.64 16 20 O -0.17 -5.24 10.30 -11.05 -0.11 -5.35 16 21 N -0.51 -22.90 10.73 -182.26 -1.95 -24.86 16 22 C 0.02 0.88 7.19 39.74 0.29 1.16 16 23 C -0.08 -2.88 10.11 22.55 0.23 -2.65 16 24 C -0.12 -3.54 10.01 22.26 0.22 -3.32 16 25 C -0.12 -3.96 10.03 22.34 0.22 -3.73 16 26 C -0.12 -5.22 7.09 22.32 0.16 -5.06 16 27 C -0.02 -0.92 5.28 38.88 0.21 -0.71 16 28 H 0.30 14.22 8.31 -92.70 -0.77 13.45 16 29 H 0.13 5.17 7.63 -2.91 -0.02 5.14 16 30 H 0.18 4.99 7.70 -2.91 -0.02 4.96 16 31 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.19 2.93 8.06 -2.91 -0.02 2.90 16 33 H 0.44 4.58 8.98 -74.06 -0.67 3.91 16 34 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 36 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 37 H 0.10 4.64 6.11 -2.91 -0.02 4.62 16 Total: -1.00 -69.63 335.41 4.49 -65.13 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.35 Total: 21.10 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.46 Total: -13.12 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.46 Total: -85.96 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.55 Total: -30.63 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.70 Total: 43.47 kcal Total: -69.63 4.49 -65.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.768 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds