Wall clock time and date at job start Tue Mar 31 2020 14:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31258 * 1 3 3 Si 1.86811 * 119.99451 * 2 1 4 4 H 1.48498 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46816 * 299.99860 * 3 2 1 6 6 H 1.48498 * 109.47055 * 59.99812 * 3 2 1 7 7 C 1.39121 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00204 * 189.53185 * 7 2 1 9 9 N 1.36851 * 120.00080 * 9.53570 * 7 2 1 10 10 C 1.37735 * 126.51387 * 218.53666 * 9 7 2 11 11 C 1.46231 * 125.24079 * 0.04030 * 10 9 7 12 12 C 1.35393 * 119.99748 * 221.80432 * 11 10 9 13 13 C 1.46108 * 120.00162 * 8.94056 * 12 11 10 14 14 C 1.38328 * 125.81413 * 187.61757 * 13 12 11 15 15 C 1.39538 * 106.90636 * 179.72226 * 14 13 12 16 16 C 1.38022 * 106.92392 * 0.38124 * 15 14 13 17 17 C 1.46375 * 125.79911 * 179.88040 * 16 15 14 18 18 O 1.21644 * 119.99339 * 5.17315 * 17 16 15 19 19 O 1.34934 * 120.00154 * 185.17599 * 17 16 15 20 20 O 1.34573 * 125.81472 * 7.57019 * 13 12 11 21 21 N 1.31636 * 109.50966 * 179.77359 * 10 9 7 22 22 C 1.34803 * 109.78594 * 0.22888 * 21 10 9 23 23 C 1.40006 * 133.17400 * 180.02562 * 22 21 10 24 24 C 1.37601 * 119.78411 * 179.91565 * 23 22 21 25 25 C 1.38813 * 120.55717 * 0.10723 * 24 23 22 26 26 C 1.37948 * 120.47423 * 359.92167 * 25 24 23 27 27 C 1.38259 * 126.51292 * 38.70556 * 9 7 2 28 28 H 0.96993 * 120.00751 * 4.98677 * 1 2 3 29 29 H 1.08004 * 120.00750 * 41.80875 * 11 10 9 30 30 H 1.08005 * 119.99646 * 188.93978 * 12 11 10 31 31 H 1.07993 * 126.54605 * 359.96214 * 14 13 12 32 32 H 1.07994 * 126.53891 * 180.22726 * 15 14 13 33 33 H 0.96700 * 113.99771 * 174.96263 * 19 17 16 34 34 H 1.07993 * 120.11119 * 359.97438 * 23 22 21 35 35 H 1.07997 * 119.72725 * 180.02562 * 24 23 22 36 36 H 1.07993 * 119.76179 * 179.97438 * 25 24 23 37 37 H 1.08000 * 120.06288 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6179 0.0000 4 1 3.7065 1.3466 -0.0006 5 1 1.8876 2.3965 -1.2125 6 1 1.8876 2.3966 1.2125 7 6 2.0083 -1.2048 0.0005 8 1 3.0772 -1.2111 0.1554 9 7 1.3384 -2.3819 -0.1953 10 6 1.5830 -3.5795 0.4396 11 6 2.6168 -3.8036 1.4492 12 6 3.3558 -4.9377 1.4212 13 6 3.2601 -5.8440 0.2793 14 6 3.8397 -7.0968 0.1894 15 6 3.4929 -7.6158 -1.0586 16 6 2.7223 -6.6610 -1.6907 17 6 2.1396 -6.7791 -3.0283 18 8 2.2402 -7.8226 -3.6454 19 8 1.4910 -5.7307 -3.5767 20 8 2.5924 -5.6026 -0.8639 21 7 0.7390 -4.4897 0.0014 22 6 -0.0775 -3.9472 -0.9239 23 6 -1.1312 -4.4597 -1.6902 24 6 -1.7953 -3.6403 -2.5739 25 6 -1.4280 -2.3090 -2.7143 26 6 -0.3919 -1.7867 -1.9682 27 6 0.2895 -2.5958 -1.0703 28 1 -0.4851 0.8367 -0.0730 29 1 2.7908 -3.0645 2.2173 30 1 4.0160 -5.1723 2.2431 31 1 4.4420 -7.5823 0.9430 32 1 3.7758 -8.5795 -1.4553 33 1 1.2083 -5.8770 -4.4898 34 1 -1.4225 -5.4945 -1.5874 35 1 -2.6083 -4.0365 -3.1642 36 1 -1.9578 -1.6775 -3.4120 37 1 -0.1120 -0.7498 -2.0825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601079498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:24 Heat of formation + Delta-G solvation = 25.779647 kcal Electronic energy + Delta-G solvation = -27392.327189 eV Core-core repulsion = 23488.974647 eV Total energy + Delta-G solvation = -3903.352541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.09863 -40.66778 -39.63920 -36.23339 -35.90100 -34.43679 -33.63977 -32.66650 -31.28610 -29.42543 -29.06035 -27.52564 -25.34060 -24.60385 -22.45135 -21.49964 -21.13220 -20.56447 -20.14773 -18.85282 -18.06014 -17.72936 -17.17988 -16.32883 -16.01653 -15.53263 -15.29864 -14.80239 -14.68290 -14.40797 -13.81403 -13.64659 -13.42845 -13.05680 -12.87992 -12.82761 -12.66863 -12.11937 -12.01415 -11.73303 -11.47394 -11.37710 -11.31794 -10.95494 -10.76649 -10.71790 -10.67486 -10.34770 -9.97492 -9.63596 -9.52129 -8.95330 -8.69178 -7.84707 -7.28654 -6.74674 -6.67386 -4.66613 0.77350 1.67717 2.28117 2.73121 2.85664 2.94268 2.96605 2.99526 3.14691 3.19410 3.65142 3.70112 4.09178 4.46330 4.67802 4.89666 5.10382 5.13496 5.23093 5.43932 5.59778 5.80937 5.88555 5.89509 5.97908 6.10616 6.22310 6.36657 6.44958 6.50728 6.61962 6.68492 6.78936 6.84349 6.89501 7.01746 7.19499 7.35473 7.52813 7.64244 7.86401 8.02898 8.04172 8.13776 8.51214 9.12914 9.31361 10.11408 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.005619 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.346505 B = 4982.269718 C = 6295.216379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.053 3.947 3 Si 0.932 3.068 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.352 4.352 8 H 0.108 0.892 9 N -0.270 5.270 10 C 0.202 3.798 11 C 0.000 4.000 12 C -0.114 4.114 13 C 0.096 3.904 14 C -0.233 4.233 15 C -0.109 4.109 16 C -0.086 4.086 17 C 0.570 3.430 18 O -0.515 6.515 19 O -0.479 6.479 20 O -0.092 6.092 21 N -0.492 5.492 22 C 0.048 3.952 23 C -0.083 4.083 24 C -0.141 4.141 25 C -0.159 4.159 26 C -0.036 4.036 27 C 0.050 3.950 28 H 0.282 0.718 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.407 0.593 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -5.285 -0.941 7.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.160 4.160 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.481 4.481 8 H 0.126 0.874 9 N 0.060 4.940 10 C -0.053 4.053 11 C -0.020 4.020 12 C -0.135 4.135 13 C 0.041 3.959 14 C -0.252 4.252 15 C -0.129 4.129 16 C -0.138 4.138 17 C 0.416 3.584 18 O -0.407 6.407 19 O -0.287 6.287 20 O 0.016 5.984 21 N -0.215 5.215 22 C -0.079 4.079 23 C -0.103 4.103 24 C -0.161 4.161 25 C -0.181 4.181 26 C -0.056 4.056 27 C -0.066 4.066 28 H 0.093 0.907 29 H 0.159 0.841 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.264 0.736 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.675 -5.704 -0.368 7.384 hybrid contribution 0.059 1.570 -0.696 1.719 sum 4.734 -4.134 -1.064 6.374 Atomic orbital electron populations 1.69949 1.06416 1.29571 1.39119 1.25683 0.95543 1.00652 0.94131 0.85786 0.79962 0.80006 0.78663 1.18534 1.19685 1.19861 1.19752 0.93274 0.81870 1.53182 0.87393 1.41147 1.22144 1.07546 1.23126 1.21392 1.00457 0.83960 0.99519 1.21293 0.90001 0.95891 0.94769 1.21266 1.02986 0.94098 0.95137 1.21411 0.92640 0.94985 0.86848 1.21948 1.08567 0.95464 0.99180 1.21878 0.97677 0.99202 0.94133 1.20961 1.09777 0.90604 0.92474 1.18980 0.74400 0.81195 0.83864 1.90946 1.58128 1.29584 1.62031 1.85286 1.68393 1.41412 1.33575 1.84715 1.54670 1.36750 1.22225 1.70247 1.07216 1.29795 1.14272 1.18637 0.98880 0.91033 0.99347 1.19850 0.95370 0.98260 0.96848 1.20456 1.00853 0.94198 1.00635 1.20566 0.99487 0.95423 1.02580 1.20048 0.94152 0.98139 0.93251 1.18759 0.96198 0.95065 0.96611 0.90670 0.84109 0.82687 0.82631 0.82599 0.73628 0.87884 0.87648 0.87641 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.51 10.21 55.50 0.57 -19.94 16 2 C 0.05 1.25 4.87 -17.47 -0.09 1.16 16 3 Si 0.93 17.82 29.57 -169.99 -5.03 12.79 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.35 -8.60 9.59 -14.98 -0.14 -8.74 16 8 H 0.11 2.47 7.85 -52.48 -0.41 2.06 16 9 N -0.27 -6.85 2.86 -57.49 -0.16 -7.01 16 10 C 0.20 4.71 6.20 -154.02 -0.95 3.76 16 11 C 0.00 0.00 9.76 -37.39 -0.36 -0.36 16 12 C -0.11 -1.73 10.15 -37.44 -0.38 -2.11 16 13 C 0.10 1.67 6.61 -36.39 -0.24 1.43 16 14 C -0.23 -3.36 10.88 -39.06 -0.42 -3.79 16 15 C -0.11 -1.69 10.63 -39.18 -0.42 -2.11 16 16 C -0.09 -1.59 7.20 -36.39 -0.26 -1.86 16 17 C 0.57 10.10 8.26 34.00 0.28 10.38 16 18 O -0.51 -9.34 17.61 -19.37 -0.34 -9.68 16 19 O -0.48 -7.99 13.56 -42.66 -0.58 -8.57 16 20 O -0.09 -1.89 6.84 2.90 0.02 -1.87 16 21 N -0.49 -11.94 8.44 -8.96 -0.08 -12.02 16 22 C 0.05 1.18 7.19 -84.93 -0.61 0.57 16 23 C -0.08 -1.81 10.11 -39.15 -0.40 -2.20 16 24 C -0.14 -2.75 10.01 -39.60 -0.40 -3.15 16 25 C -0.16 -3.27 10.03 -39.47 -0.40 -3.67 16 26 C -0.04 -0.85 8.50 -39.50 -0.34 -1.19 16 27 C 0.05 1.28 6.11 -83.81 -0.51 0.77 16 28 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 30 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.41 4.50 8.98 45.56 0.41 4.91 16 34 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 2.80 6.37 -52.49 -0.33 2.47 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -31.95 334.40 -8.63 -40.58 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -2.43 Total: 11.77 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -5.64 Total: -11.09 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.33 Total: -38.97 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.90 Total: -20.12 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.95 -8.63 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.364 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds