Wall clock time and date at job start Tue Mar 31 2020 14:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31258 * 1 3 3 Si 1.86811 * 119.99451 * 2 1 4 4 H 1.48498 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46816 * 299.99860 * 3 2 1 6 6 H 1.48498 * 109.47055 * 59.99812 * 3 2 1 7 7 C 1.39121 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00204 * 189.53185 * 7 2 1 9 9 N 1.36851 * 120.00080 * 9.53570 * 7 2 1 10 10 C 1.37735 * 126.51387 * 218.53666 * 9 7 2 11 11 C 1.46231 * 125.24079 * 0.04030 * 10 9 7 12 12 C 1.35393 * 119.99748 * 221.80432 * 11 10 9 13 13 C 1.46108 * 120.00162 * 8.94056 * 12 11 10 14 14 C 1.38328 * 125.81413 * 187.61757 * 13 12 11 15 15 C 1.39538 * 106.90636 * 179.72226 * 14 13 12 16 16 C 1.38022 * 106.92392 * 0.38124 * 15 14 13 17 17 C 1.46375 * 125.79911 * 179.88040 * 16 15 14 18 18 O 1.21644 * 119.99339 * 5.17315 * 17 16 15 19 19 O 1.34934 * 120.00154 * 185.17599 * 17 16 15 20 20 O 1.34573 * 125.81472 * 7.57019 * 13 12 11 21 21 N 1.31636 * 109.50966 * 179.77359 * 10 9 7 22 22 C 1.34803 * 109.78594 * 0.22888 * 21 10 9 23 23 C 1.40006 * 133.17400 * 180.02562 * 22 21 10 24 24 C 1.37601 * 119.78411 * 179.91565 * 23 22 21 25 25 C 1.38813 * 120.55717 * 0.10723 * 24 23 22 26 26 C 1.37948 * 120.47423 * 359.92167 * 25 24 23 27 27 C 1.38259 * 126.51292 * 38.70556 * 9 7 2 28 28 H 0.96993 * 120.00751 * 4.98677 * 1 2 3 29 29 H 1.08004 * 120.00750 * 41.80875 * 11 10 9 30 30 H 1.08005 * 119.99646 * 188.93978 * 12 11 10 31 31 H 1.07993 * 126.54605 * 359.96214 * 14 13 12 32 32 H 1.07994 * 126.53891 * 180.22726 * 15 14 13 33 33 H 0.96700 * 113.99771 * 174.96263 * 19 17 16 34 34 H 1.07993 * 120.11119 * 359.97438 * 23 22 21 35 35 H 1.07997 * 119.72725 * 180.02562 * 24 23 22 36 36 H 1.07993 * 119.76179 * 179.97438 * 25 24 23 37 37 H 1.08000 * 120.06288 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6179 0.0000 4 1 3.7065 1.3466 -0.0006 5 1 1.8876 2.3965 -1.2125 6 1 1.8876 2.3966 1.2125 7 6 2.0083 -1.2048 0.0005 8 1 3.0772 -1.2111 0.1554 9 7 1.3384 -2.3819 -0.1953 10 6 1.5830 -3.5795 0.4396 11 6 2.6168 -3.8036 1.4492 12 6 3.3558 -4.9377 1.4212 13 6 3.2601 -5.8440 0.2793 14 6 3.8397 -7.0968 0.1894 15 6 3.4929 -7.6158 -1.0586 16 6 2.7223 -6.6610 -1.6907 17 6 2.1396 -6.7791 -3.0283 18 8 2.2402 -7.8226 -3.6454 19 8 1.4910 -5.7307 -3.5767 20 8 2.5924 -5.6026 -0.8639 21 7 0.7390 -4.4897 0.0014 22 6 -0.0775 -3.9472 -0.9239 23 6 -1.1312 -4.4597 -1.6902 24 6 -1.7953 -3.6403 -2.5739 25 6 -1.4280 -2.3090 -2.7143 26 6 -0.3919 -1.7867 -1.9682 27 6 0.2895 -2.5958 -1.0703 28 1 -0.4851 0.8367 -0.0730 29 1 2.7908 -3.0645 2.2173 30 1 4.0160 -5.1723 2.2431 31 1 4.4420 -7.5823 0.9430 32 1 3.7758 -8.5795 -1.4553 33 1 1.2083 -5.8770 -4.4898 34 1 -1.4225 -5.4945 -1.5874 35 1 -2.6083 -4.0365 -3.1642 36 1 -1.9578 -1.6775 -3.4120 37 1 -0.1120 -0.7498 -2.0825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601079498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:24 Heat of formation + Delta-G solvation = 7.304878 kcal Electronic energy + Delta-G solvation = -27393.128315 eV Core-core repulsion = 23488.974647 eV Total energy + Delta-G solvation = -3904.153667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.41132 -42.36092 -40.98668 -37.87341 -37.24342 -36.10601 -35.03802 -33.95056 -33.04333 -30.93790 -30.61683 -29.09910 -27.10306 -25.99147 -23.90183 -22.90897 -22.72206 -22.10499 -21.62768 -20.31977 -19.52406 -19.24729 -18.57248 -17.91265 -17.42496 -17.23668 -16.76570 -16.35425 -16.10264 -15.91145 -15.28185 -15.13295 -14.76532 -14.71235 -14.55710 -14.08180 -13.89421 -13.73682 -13.42175 -13.24880 -13.02647 -12.87575 -12.71990 -12.55148 -12.29255 -12.22660 -12.07806 -11.97952 -11.43193 -11.15719 -10.88459 -10.70017 -10.46173 -9.24158 -9.02012 -8.40628 -8.37273 -6.49318 -0.57962 0.25713 0.77384 1.08334 1.36533 1.40172 1.51668 1.63491 1.80122 1.91873 2.11205 2.42261 2.42864 2.82279 2.97971 3.40164 3.64882 3.70313 3.94365 4.17339 4.23613 4.41234 4.46658 4.60338 4.62290 4.73919 4.86277 4.91521 5.00757 5.04144 5.12075 5.21292 5.27258 5.32734 5.35689 5.48377 5.61807 5.84195 5.93585 6.11371 6.15623 6.28810 6.44473 6.75788 6.80951 7.39797 7.57229 8.39602 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.005619 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.346505 B = 4982.269718 C = 6295.216379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.014 3.986 3 Si 1.002 2.998 4 H -0.252 1.252 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.377 4.377 8 H 0.112 0.888 9 N -0.297 5.297 10 C 0.202 3.798 11 C -0.053 4.053 12 C -0.066 4.066 13 C 0.053 3.947 14 C -0.199 4.199 15 C -0.101 4.101 16 C -0.122 4.122 17 C 0.570 3.430 18 O -0.526 6.526 19 O -0.491 6.491 20 O -0.128 6.128 21 N -0.508 5.508 22 C 0.021 3.979 23 C -0.096 4.096 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.065 4.065 27 C 0.018 3.982 28 H 0.283 0.717 29 H 0.159 0.841 30 H 0.214 0.786 31 H 0.203 0.797 32 H 0.182 0.818 33 H 0.426 0.574 34 H 0.115 0.885 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -6.601 -0.438 9.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.175 1.175 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.505 4.505 8 H 0.130 0.870 9 N 0.032 4.968 10 C -0.054 4.054 11 C -0.073 4.073 12 C -0.086 4.086 13 C -0.001 4.001 14 C -0.218 4.218 15 C -0.120 4.120 16 C -0.173 4.173 17 C 0.417 3.583 18 O -0.419 6.419 19 O -0.303 6.303 20 O -0.021 6.021 21 N -0.231 5.231 22 C -0.105 4.105 23 C -0.116 4.116 24 C -0.149 4.149 25 C -0.171 4.171 26 C -0.085 4.085 27 C -0.097 4.097 28 H 0.094 0.906 29 H 0.176 0.824 30 H 0.230 0.770 31 H 0.220 0.780 32 H 0.199 0.801 33 H 0.286 0.714 34 H 0.133 0.867 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.968 -7.036 0.114 9.227 hybrid contribution -0.304 1.732 -0.896 1.974 sum 5.664 -5.304 -0.782 7.798 Atomic orbital electron populations 1.70063 1.07989 1.30301 1.40617 1.26590 0.96174 1.03583 0.93164 0.84757 0.78988 0.75500 0.78473 1.17537 1.19646 1.19450 1.20055 0.93649 0.82458 1.54315 0.87009 1.41417 1.22897 1.08399 1.24050 1.22335 1.00694 0.83193 0.99178 1.21521 0.91678 0.98589 0.95467 1.22012 1.00659 0.91188 0.94787 1.22164 0.93893 0.97013 0.86995 1.22489 1.06475 0.93682 0.99141 1.22334 0.96057 0.99427 0.94207 1.21447 1.11409 0.91418 0.93048 1.19031 0.74229 0.81102 0.83953 1.90922 1.58808 1.29784 1.62382 1.85268 1.68276 1.41430 1.35278 1.84681 1.55932 1.37966 1.23556 1.70241 1.07830 1.30201 1.14862 1.19128 0.99929 0.91110 1.00314 1.20151 0.95116 0.99200 0.97137 1.20873 1.00973 0.93389 0.99701 1.20970 0.98091 0.96335 1.01734 1.20146 0.96022 0.97565 0.94813 1.19210 0.97025 0.95959 0.97545 0.90632 0.82373 0.76983 0.77988 0.80084 0.71382 0.86742 0.83329 0.84451 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.88 10.21 21.69 0.22 -44.66 16 2 C 0.01 0.67 4.87 84.99 0.41 1.09 16 3 Si 1.00 37.38 29.57 68.60 2.03 39.41 16 4 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.38 -19.21 9.59 84.12 0.81 -18.41 16 8 H 0.11 5.34 7.85 -2.91 -0.02 5.31 16 9 N -0.30 -15.79 2.86 -335.81 -0.96 -16.75 16 10 C 0.20 9.78 6.20 135.58 0.84 10.62 16 11 C -0.05 -1.92 9.76 23.69 0.23 -1.69 16 12 C -0.07 -1.84 10.15 23.66 0.24 -1.60 16 13 C 0.05 1.75 6.61 24.33 0.16 1.91 16 14 C -0.20 -4.98 10.88 22.60 0.25 -4.73 16 15 C -0.10 -2.86 10.63 22.53 0.24 -2.62 16 16 C -0.12 -4.45 7.20 24.34 0.18 -4.28 16 17 C 0.57 20.30 8.26 69.94 0.58 20.88 16 18 O -0.53 -18.83 17.61 19.36 0.34 -18.49 16 19 O -0.49 -16.77 13.56 -57.05 -0.77 -17.54 16 20 O -0.13 -5.28 6.84 -11.13 -0.08 -5.36 16 21 N -0.51 -25.47 8.44 -182.27 -1.54 -27.00 16 22 C 0.02 1.08 7.19 39.74 0.29 1.36 16 23 C -0.10 -4.20 10.11 22.55 0.23 -3.97 16 24 C -0.13 -4.89 10.01 22.26 0.22 -4.67 16 25 C -0.15 -6.15 10.03 22.34 0.22 -5.93 16 26 C -0.06 -3.22 8.50 22.32 0.19 -3.03 16 27 C 0.02 0.98 6.11 38.88 0.24 1.21 16 28 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.16 4.97 8.06 -2.91 -0.02 4.94 16 30 H 0.21 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.18 4.11 8.06 -2.91 -0.02 4.08 16 33 H 0.43 9.56 8.98 -74.06 -0.67 8.89 16 34 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.10 5.10 6.37 -2.91 -0.02 5.08 16 Total: -1.00 -74.86 334.40 5.04 -69.82 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.48 Total: 34.42 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 5.32 Total: -13.86 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -2.28 Total: -88.41 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.51 Total: -41.39 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -74.86 5.04 -69.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.125 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds