Wall clock time and date at job start Tue Mar 31 2020 13:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46900 * 2 1 4 4 C 1.50696 * 109.47093 * 120.00252 * 2 1 3 5 5 H 1.08000 * 120.00260 * 119.99794 * 4 2 1 6 6 C 1.37880 * 119.99755 * 299.99938 * 4 2 1 7 7 N 1.31504 * 120.00413 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99640 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47198 * 90.00268 * 8 6 4 10 10 H 1.48496 * 109.47155 * 209.99987 * 8 6 4 11 11 H 1.48500 * 109.47284 * 330.00107 * 8 6 4 12 12 N 1.46897 * 109.47032 * 240.00265 * 2 1 3 13 13 C 1.46899 * 110.99726 * 183.95092 * 12 2 1 14 14 C 1.40769 * 111.00131 * 60.00018 * 12 2 1 15 15 C 1.38325 * 122.53901 * 60.02476 * 14 12 2 16 16 C 1.34784 * 114.66876 * 180.02562 * 15 14 12 17 17 C 1.47904 * 125.21701 * 180.02562 * 16 15 14 18 18 N 1.34203 * 126.70390 * 359.68395 * 17 16 15 19 19 N 1.28986 * 107.25209 * 179.87216 * 18 17 16 20 20 N 1.28716 * 108.99540 * 0.39896 * 19 18 17 21 21 H 0.96997 * 125.32126 * 179.74403 * 20 19 18 22 22 N 1.28873 * 109.36408 * 359.74829 * 20 19 18 23 23 S 1.75865 * 109.56223 * 359.97438 * 16 15 14 24 24 C 1.33970 * 122.54166 * 240.04890 * 14 12 2 25 25 N 1.48226 * 125.11816 * 359.92648 * 24 14 12 26 26 O 1.21801 * 120.00440 * 180.02562 * 25 24 14 27 27 O 1.21804 * 119.99802 * 0.03374 * 25 24 14 28 28 H 1.08999 * 109.46937 * 300.00226 * 1 2 3 29 29 H 1.09000 * 109.46542 * 59.99521 * 1 2 3 30 30 H 1.08996 * 109.47150 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00320 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47560 * 296.04691 * 13 12 2 33 33 H 1.08997 * 109.47159 * 56.05109 * 13 12 2 34 34 H 1.09011 * 109.46967 * 176.04474 * 13 12 2 35 35 H 1.08001 * 122.66428 * 0.28620 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1119 11 1 2.4858 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1870 14 6 1.5684 -0.0541 -2.3701 15 6 1.8749 1.2621 -2.6652 16 6 1.3600 1.7128 -3.8265 17 6 1.5413 3.0775 -4.3671 18 7 2.2308 4.0798 -3.8004 19 7 2.1461 5.0965 -4.5896 20 7 1.4321 4.7755 -5.6113 21 1 1.2142 5.3644 -6.3506 22 7 1.0516 3.5494 -5.4985 23 16 0.4410 0.4289 -4.6008 24 6 0.8090 -0.6751 -3.2825 25 7 0.3497 -2.0816 -3.1949 26 8 -0.3397 -2.5536 -4.0812 27 8 0.6615 -2.7655 -2.2364 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7082 1.1607 3.4844 32 1 3.9193 0.2045 -1.2300 33 1 3.8070 -1.2914 -0.2720 34 1 3.8165 -1.3720 -2.0501 35 1 2.4821 1.8783 -2.0186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603443502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:11 Heat of formation + Delta-G solvation = 163.255214 kcal Electronic energy + Delta-G solvation = -25130.259252 eV Core-core repulsion = 21297.064458 eV Total energy + Delta-G solvation = -3833.194794 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.70750 -43.01524 -40.91008 -37.44729 -37.31235 -35.60658 -34.97584 -34.17954 -31.76438 -31.19176 -28.39529 -27.16749 -26.00840 -25.93319 -25.20655 -23.65766 -22.54688 -21.25005 -20.54804 -20.06378 -18.64921 -18.56480 -18.48297 -18.37831 -17.68045 -17.07230 -16.84016 -15.83361 -15.74570 -15.33540 -14.98678 -14.55432 -14.44934 -14.03707 -13.64589 -13.48749 -12.99676 -12.84783 -12.67479 -12.66856 -12.63504 -12.56370 -12.38980 -12.32880 -12.23003 -12.19098 -12.13025 -12.06620 -11.94129 -11.04625 -10.53850 -10.34459 -9.80684 -9.34490 -8.11794 -6.22496 -1.67722 -0.69111 -0.29788 -0.00378 0.05096 0.61612 0.71570 1.17135 1.30739 1.46185 1.48873 1.59089 2.23297 2.44658 2.93459 3.03334 3.20035 3.54340 3.71410 3.91161 4.20398 4.38800 4.45530 4.53820 4.63395 4.74763 4.90090 4.95297 5.15991 5.20790 5.34842 5.44622 5.65160 5.71185 6.07884 6.17295 6.52086 6.61233 6.85089 6.87089 7.45912 8.94773 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.004626 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.372580 B = 6051.821869 C = 7662.338950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.229 3.771 3 H -0.010 1.010 4 C -0.517 4.517 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.269 1.269 12 N -0.499 5.499 13 C 0.042 3.958 14 C 0.191 3.809 15 C -0.131 4.131 16 C -0.070 4.070 17 C 0.226 3.774 18 N -0.275 5.275 19 N -0.042 5.042 20 N -0.184 5.184 21 H 0.501 0.499 22 N -0.274 5.274 23 S 0.364 5.636 24 C -0.195 4.195 25 N 0.067 4.933 26 O -0.181 6.181 27 O -0.137 6.137 28 H 0.069 0.931 29 H 0.011 0.989 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.137 7.894 -19.320 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 H 0.008 0.992 4 C -0.555 4.555 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.194 1.194 12 N -0.222 5.222 13 C -0.104 4.104 14 C 0.079 3.921 15 C -0.168 4.168 16 C -0.193 4.193 17 C -0.055 4.055 18 N -0.148 5.148 19 N -0.037 5.037 20 N -0.037 5.037 21 H 0.361 0.639 22 N -0.128 5.128 23 S 0.630 5.370 24 C -0.398 4.398 25 N 0.585 4.415 26 O -0.390 6.390 27 O -0.357 6.357 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.430 8.658 -20.630 22.378 hybrid contribution 0.792 0.115 2.111 2.257 sum 1.222 8.773 -18.520 20.529 Atomic orbital electron populations 1.21647 0.97956 0.98902 0.99296 1.19154 0.92033 0.91068 0.85301 0.99228 1.21329 1.31474 1.12558 0.90146 0.91456 1.25626 0.95186 0.95636 1.01721 1.69987 1.37495 1.24144 1.24218 0.85521 0.77985 0.79161 0.78789 1.19900 1.21295 1.19373 1.60375 1.12391 1.50341 0.99044 1.22327 0.84147 1.00563 1.03370 1.18105 0.91513 0.90468 0.92047 1.20709 1.03450 0.95267 0.97344 1.21436 1.05118 0.93607 0.99183 1.22071 0.98840 0.94217 0.90416 1.76289 1.19303 0.96549 1.22699 1.78951 1.10291 1.20124 0.94359 1.47784 1.29746 1.07413 1.18720 0.63855 1.74983 1.21895 0.96784 1.19149 1.84122 1.46226 0.93732 1.12947 1.26366 1.16279 0.88978 1.08223 1.42477 0.98298 1.01072 0.99620 1.94461 1.35993 1.75108 1.33428 1.94708 1.60030 1.57457 1.23500 0.91207 0.96981 0.95489 0.92844 0.94816 0.89825 0.91276 0.81709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.85 71.98 0.64 -5.35 16 2 C 0.23 11.24 1.88 44.17 0.08 11.33 16 3 H -0.01 -0.51 7.45 -2.39 -0.02 -0.53 16 4 C -0.52 -27.41 7.88 25.60 0.20 -27.21 16 5 H 0.07 3.54 6.41 -2.91 -0.02 3.52 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.92 -51.50 11.32 21.45 0.24 -51.25 16 8 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.50 -20.96 3.31 -704.37 -2.33 -23.29 16 13 C 0.04 1.55 9.15 127.69 1.17 2.71 16 14 C 0.19 6.89 3.20 36.75 0.12 7.01 16 15 C -0.13 -4.11 8.76 21.50 0.19 -3.93 16 16 C -0.07 -1.84 6.44 24.04 0.15 -1.68 16 17 C 0.23 5.35 8.16 137.11 1.12 6.47 16 18 N -0.28 -7.03 12.51 -52.41 -0.66 -7.68 16 19 N -0.04 -0.81 13.46 37.02 0.50 -0.31 16 20 N -0.18 -2.17 7.90 37.02 0.29 -1.88 16 21 H 0.50 0.28 8.96 -347.51 -3.11 -2.84 16 22 N -0.27 -4.82 12.41 -52.37 -0.65 -5.47 16 23 S 0.36 8.82 23.10 -56.49 -1.31 7.52 16 24 C -0.20 -6.65 7.52 80.91 0.61 -6.04 16 25 N 0.07 2.57 4.46 -47.70 -0.21 2.36 16 26 O -0.18 -6.52 19.08 18.89 0.36 -6.16 16 27 O -0.14 -5.97 17.86 18.88 0.34 -5.63 16 28 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 29 H 0.01 0.52 7.21 -2.39 -0.02 0.50 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.03 1.15 7.65 -2.39 -0.02 1.13 16 33 H 0.08 3.26 6.10 -2.39 -0.01 3.24 16 34 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.17 5.38 7.63 -2.91 -0.02 5.36 16 Total: -1.00 -66.88 325.47 1.40 -65.47 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -1.93 Total: -3.33 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.73 Total: -15.30 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.81 Total: -87.52 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.70 Total: -11.79 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 8.82 SS G_CDS: -1.31 Total: 7.52 kcal Total: -66.88 1.40 -65.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603443502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.727 kcal (2) G-P(sol) polarization free energy of solvation -66.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds