Wall clock time and date at job start Tue Mar 31 2020 13:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50698 * 109.47030 * 240.00515 * 2 1 3 5 5 H 1.07998 * 119.99770 * 275.01945 * 4 2 1 6 6 C 1.37874 * 120.00440 * 95.02299 * 4 2 1 7 7 N 1.31513 * 120.00466 * 184.87506 * 6 4 2 8 8 Si 1.86805 * 119.99789 * 4.87585 * 6 4 2 9 9 H 1.48500 * 109.47081 * 84.75239 * 8 6 4 10 10 H 1.48495 * 109.47117 * 204.75566 * 8 6 4 11 11 H 1.48505 * 109.47198 * 324.75373 * 8 6 4 12 12 N 1.46898 * 109.47074 * 119.99969 * 2 1 3 13 13 C 1.46906 * 110.99760 * 176.04529 * 12 2 1 14 14 C 1.40757 * 111.00254 * 299.99654 * 12 2 1 15 15 C 1.38325 * 122.54481 * 299.98245 * 14 12 2 16 16 C 1.34777 * 114.66730 * 180.02562 * 15 14 12 17 17 C 1.47911 * 125.21678 * 180.02562 * 16 15 14 18 18 N 1.34213 * 126.69753 * 359.69706 * 17 16 15 19 19 N 1.28989 * 107.24743 * 179.83195 * 18 17 16 20 20 N 1.28717 * 108.99238 * 0.42576 * 19 18 17 21 21 H 0.97003 * 125.31683 * 179.73965 * 20 19 18 22 22 N 1.28874 * 109.37024 * 359.73028 * 20 19 18 23 23 S 1.75866 * 109.56589 * 359.75748 * 16 15 14 24 24 C 1.33981 * 122.53512 * 119.99854 * 14 12 2 25 25 N 1.48217 * 125.12014 * 359.96379 * 24 14 12 26 26 O 1.21802 * 119.99856 * 359.97438 * 25 24 14 27 27 O 1.21800 * 120.00170 * 179.72512 * 25 24 14 28 28 H 1.08990 * 109.46550 * 175.30038 * 1 2 3 29 29 H 1.09000 * 109.46865 * 295.30036 * 1 2 3 30 30 H 1.08994 * 109.47123 * 55.29550 * 1 2 3 31 31 H 0.96999 * 119.99957 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47158 * 183.95853 * 13 12 2 33 33 H 1.08996 * 109.47408 * 303.95904 * 13 12 2 34 34 H 1.09002 * 109.47021 * 63.95839 * 13 12 2 35 35 H 1.07997 * 122.66299 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1352 -1.7854 -1.2292 6 6 2.3607 0.0123 -2.3579 7 7 2.7072 -0.6128 -3.4619 8 14 2.3136 1.8793 -2.3173 9 1 3.5980 2.3953 -1.7795 10 1 2.1083 2.3993 -3.6930 11 1 1.1969 2.3274 -1.4469 12 7 2.0197 -0.6925 1.1994 13 6 3.4852 -0.7945 1.1870 14 6 1.5685 -0.0542 2.3700 15 6 1.8749 1.2620 2.6652 16 6 1.3610 1.7122 3.8270 17 6 1.5415 3.0771 4.3674 18 7 2.2389 4.0766 3.8053 19 7 2.1450 5.0966 4.5892 20 7 1.4322 4.7750 5.6116 21 1 1.2146 5.3638 6.3512 22 7 1.0527 3.5485 5.4993 23 16 0.4366 0.4301 4.5982 24 6 0.8099 -0.6757 3.2829 25 7 0.3496 -2.0818 3.1946 26 8 0.6598 -2.7650 2.2352 27 8 -0.3352 -2.5554 4.0836 28 1 -0.3632 -1.0241 -0.0842 29 1 -0.3633 0.4392 0.9291 30 1 -0.3633 0.5851 -0.8448 31 1 2.9385 -0.1044 -4.2549 32 1 3.8165 -1.3722 2.0499 33 1 3.8071 -1.2914 0.2718 34 1 3.9193 0.2044 1.2300 35 1 2.4785 1.8795 2.0167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603443503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:14 Heat of formation + Delta-G solvation = 182.452038 kcal Electronic energy + Delta-G solvation = -25247.345865 eV Core-core repulsion = 21414.983508 eV Total energy + Delta-G solvation = -3832.362357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.90746 -41.61694 -39.61769 -36.04638 -35.94785 -34.68683 -33.81783 -32.45642 -30.65339 -30.12973 -27.01822 -25.50264 -25.10748 -24.57690 -24.00030 -22.43198 -20.95344 -19.85632 -19.59066 -18.71177 -17.61348 -17.42416 -17.27766 -17.15242 -16.43041 -15.75944 -15.24284 -14.55594 -14.47323 -14.03362 -13.53187 -13.33006 -12.98638 -12.68507 -12.56802 -12.27655 -11.81732 -11.76246 -11.60452 -11.43693 -11.28369 -11.15136 -11.12133 -10.86328 -10.78679 -10.68000 -10.63825 -10.43877 -9.92649 -9.37306 -9.23972 -8.80079 -8.65124 -7.86587 -6.20933 -4.20387 -0.48348 0.45066 0.62547 1.10694 1.19438 1.75022 1.84776 1.91679 2.40396 3.11739 3.16723 3.26000 3.28215 3.84728 4.27176 4.28254 4.66611 4.79534 4.89645 5.11320 5.19084 5.47376 5.73604 5.88668 5.89860 6.02058 6.19541 6.35344 6.43290 6.62215 6.65413 6.81640 7.09144 7.38474 7.58623 7.65748 7.77245 8.06392 8.46269 8.92859 9.39789 10.90906 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.005678 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.846750 B = 4930.111544 C = 7006.320443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.185 3.815 3 H 0.011 0.989 4 C -0.501 4.501 5 H 0.090 0.910 6 C 0.078 3.922 7 N -0.886 5.886 8 Si 0.863 3.137 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 N -0.480 5.480 13 C 0.042 3.958 14 C 0.195 3.805 15 C -0.116 4.116 16 C -0.090 4.090 17 C 0.244 3.756 18 N -0.248 5.248 19 N -0.040 5.040 20 N -0.221 5.221 21 H 0.479 0.521 22 N -0.286 5.286 23 S 0.281 5.719 24 C -0.168 4.168 25 N 0.063 4.937 26 O -0.073 6.073 27 O -0.206 6.206 28 H 0.062 0.938 29 H 0.013 0.987 30 H 0.053 0.947 31 H 0.267 0.733 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.022 0.978 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 9.866 19.158 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.081 3.919 3 H 0.028 0.972 4 C -0.539 4.539 5 H 0.108 0.892 6 C -0.125 4.125 7 N -0.522 5.522 8 Si 0.690 3.310 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 N -0.204 5.204 13 C -0.104 4.104 14 C 0.084 3.916 15 C -0.155 4.155 16 C -0.212 4.212 17 C -0.037 4.037 18 N -0.122 5.122 19 N -0.036 5.036 20 N -0.068 5.068 21 H 0.334 0.666 22 N -0.138 5.138 23 S 0.546 5.454 24 C -0.371 4.371 25 N 0.586 4.414 26 O -0.307 6.307 27 O -0.405 6.405 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.040 0.960 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.803 10.562 20.481 23.214 hybrid contribution 0.670 1.727 -0.974 2.093 sum -2.133 12.289 19.507 23.154 Atomic orbital electron populations 1.22006 0.97504 1.01808 0.98077 1.19945 0.92562 0.92204 0.87193 0.97172 1.20800 1.43526 0.96304 0.93309 0.89154 1.24957 0.94412 0.97799 0.95374 1.69866 1.44936 1.35799 1.01649 0.87075 0.79224 0.86936 0.77742 1.19873 1.21066 1.19057 1.60656 1.11812 1.49657 0.98233 1.22322 0.84370 0.99825 1.03883 1.18170 0.91018 0.89605 0.92837 1.20967 1.01908 0.96235 0.96352 1.21290 1.07012 0.92840 1.00106 1.22249 0.97313 0.94592 0.89576 1.76284 1.18183 0.95914 1.21839 1.78990 1.09789 1.20713 0.94078 1.47700 1.32146 1.07998 1.18906 0.66642 1.75030 1.22674 0.95989 1.20151 1.84439 1.47873 0.96429 1.16609 1.26145 1.15358 0.89675 1.05948 1.42286 0.98749 1.00261 1.00125 1.94701 1.57460 1.56128 1.22444 1.94519 1.37589 1.74531 1.33909 0.91853 0.96842 0.92778 0.92295 0.93054 0.87565 0.95958 0.81294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.15 37.16 0.34 -2.55 16 2 C 0.19 4.10 1.54 -68.86 -0.11 4.00 16 3 H 0.01 0.24 4.60 -51.93 -0.24 0.00 16 4 C -0.50 -12.99 7.39 -34.44 -0.25 -13.24 16 5 H 0.09 2.61 8.05 -52.49 -0.42 2.19 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 8 Si 0.86 20.16 26.99 -169.99 -4.59 15.57 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.00 6.82 56.52 0.39 -5.61 16 12 N -0.48 -9.54 3.31 -173.98 -0.58 -10.11 16 13 C 0.04 0.77 9.16 60.07 0.55 1.32 16 14 C 0.19 3.36 3.12 -85.22 -0.27 3.09 16 15 C -0.12 -1.77 8.76 -40.78 -0.36 -2.13 16 16 C -0.09 -1.20 6.44 -36.85 -0.24 -1.43 16 17 C 0.24 3.03 8.16 -156.24 -1.27 1.76 16 18 N -0.25 -3.26 12.51 32.08 0.40 -2.86 16 19 N -0.04 -0.42 13.46 60.35 0.81 0.40 16 20 N -0.22 -1.58 7.90 60.35 0.48 -1.10 16 21 H 0.48 0.88 8.96 -340.33 -3.05 -2.17 16 22 N -0.29 -2.85 12.41 32.10 0.40 -2.45 16 23 S 0.28 3.58 23.10 -107.50 -2.48 1.10 16 24 C -0.17 -2.79 7.52 -11.02 -0.08 -2.87 16 25 N 0.06 1.16 4.46 33.57 0.15 1.31 16 26 O -0.07 -1.48 17.86 -29.46 -0.53 -2.01 16 27 O -0.21 -3.71 19.08 -29.46 -0.56 -4.28 16 28 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.01 0.25 7.05 -51.93 -0.37 -0.12 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.11 2.14 6.82 -51.93 -0.35 1.78 16 34 H 0.02 0.37 7.66 -51.93 -0.40 -0.02 16 35 H 0.17 2.58 7.63 -52.49 -0.40 2.18 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -30.93 326.28 -8.24 -39.17 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -5.65 Total: -4.92 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.79 Total: -10.07 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 2.44 Total: -39.48 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -1.09 Total: -6.28 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.59 Total: 15.57 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.48 Total: 1.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.93 -8.24 -39.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603443503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.623 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds