Wall clock time and date at job start Tue Mar 31 2020 13:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50698 * 109.47030 * 240.00515 * 2 1 3 5 5 H 1.07998 * 119.99770 * 275.01945 * 4 2 1 6 6 C 1.37874 * 120.00440 * 95.02299 * 4 2 1 7 7 N 1.31513 * 120.00466 * 184.87506 * 6 4 2 8 8 Si 1.86805 * 119.99789 * 4.87585 * 6 4 2 9 9 H 1.48500 * 109.47081 * 84.75239 * 8 6 4 10 10 H 1.48495 * 109.47117 * 204.75566 * 8 6 4 11 11 H 1.48505 * 109.47198 * 324.75373 * 8 6 4 12 12 N 1.46898 * 109.47074 * 119.99969 * 2 1 3 13 13 C 1.46906 * 110.99760 * 176.04529 * 12 2 1 14 14 C 1.40757 * 111.00254 * 299.99654 * 12 2 1 15 15 C 1.38325 * 122.54481 * 299.98245 * 14 12 2 16 16 C 1.34777 * 114.66730 * 180.02562 * 15 14 12 17 17 C 1.47911 * 125.21678 * 180.02562 * 16 15 14 18 18 N 1.34213 * 126.69753 * 359.69706 * 17 16 15 19 19 N 1.28989 * 107.24743 * 179.83195 * 18 17 16 20 20 N 1.28717 * 108.99238 * 0.42576 * 19 18 17 21 21 H 0.97003 * 125.31683 * 179.73965 * 20 19 18 22 22 N 1.28874 * 109.37024 * 359.73028 * 20 19 18 23 23 S 1.75866 * 109.56589 * 359.75748 * 16 15 14 24 24 C 1.33981 * 122.53512 * 119.99854 * 14 12 2 25 25 N 1.48217 * 125.12014 * 359.96379 * 24 14 12 26 26 O 1.21802 * 119.99856 * 359.97438 * 25 24 14 27 27 O 1.21800 * 120.00170 * 179.72512 * 25 24 14 28 28 H 1.08990 * 109.46550 * 175.30038 * 1 2 3 29 29 H 1.09000 * 109.46865 * 295.30036 * 1 2 3 30 30 H 1.08994 * 109.47123 * 55.29550 * 1 2 3 31 31 H 0.96999 * 119.99957 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47158 * 183.95853 * 13 12 2 33 33 H 1.08996 * 109.47408 * 303.95904 * 13 12 2 34 34 H 1.09002 * 109.47021 * 63.95839 * 13 12 2 35 35 H 1.07997 * 122.66299 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1352 -1.7854 -1.2292 6 6 2.3607 0.0123 -2.3579 7 7 2.7072 -0.6128 -3.4619 8 14 2.3136 1.8793 -2.3173 9 1 3.5980 2.3953 -1.7795 10 1 2.1083 2.3993 -3.6930 11 1 1.1969 2.3274 -1.4469 12 7 2.0197 -0.6925 1.1994 13 6 3.4852 -0.7945 1.1870 14 6 1.5685 -0.0542 2.3700 15 6 1.8749 1.2620 2.6652 16 6 1.3610 1.7122 3.8270 17 6 1.5415 3.0771 4.3674 18 7 2.2389 4.0766 3.8053 19 7 2.1450 5.0966 4.5892 20 7 1.4322 4.7750 5.6116 21 1 1.2146 5.3638 6.3512 22 7 1.0527 3.5485 5.4993 23 16 0.4366 0.4301 4.5982 24 6 0.8099 -0.6757 3.2829 25 7 0.3496 -2.0818 3.1946 26 8 0.6598 -2.7650 2.2352 27 8 -0.3352 -2.5554 4.0836 28 1 -0.3632 -1.0241 -0.0842 29 1 -0.3633 0.4392 0.9291 30 1 -0.3633 0.5851 -0.8448 31 1 2.9385 -0.1044 -4.2549 32 1 3.8165 -1.3722 2.0499 33 1 3.8071 -1.2914 0.2718 34 1 3.9193 0.2044 1.2300 35 1 2.4785 1.8795 2.0167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603443503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:13 Heat of formation + Delta-G solvation = 161.322048 kcal Electronic energy + Delta-G solvation = -25248.262130 eV Core-core repulsion = 21414.983508 eV Total energy + Delta-G solvation = -3833.278623 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.71935 -43.01876 -40.98373 -37.44997 -37.36126 -35.60200 -34.93275 -34.20095 -32.09345 -31.62485 -28.40543 -27.20396 -26.08488 -25.95558 -25.22210 -23.60897 -22.40029 -21.22734 -20.54682 -20.05561 -19.17977 -18.64316 -18.55939 -18.38853 -17.75125 -17.00251 -16.90640 -15.90580 -15.75671 -15.34796 -14.98002 -14.57711 -14.53516 -14.36826 -13.82586 -13.56012 -13.23497 -12.96071 -12.76172 -12.66719 -12.63894 -12.58987 -12.40660 -12.34381 -12.27921 -12.21913 -12.14511 -12.10372 -11.82864 -11.30120 -10.76085 -10.37293 -9.84879 -9.39934 -8.27905 -6.32142 -1.70656 -0.71185 -0.31869 -0.02053 0.03181 0.60384 0.68353 1.15882 1.27504 1.33046 1.35940 1.43568 2.21365 2.31982 2.79971 2.97333 3.13775 3.49554 3.68607 3.88418 4.18197 4.32390 4.35521 4.41147 4.49478 4.61080 4.68747 4.80700 4.93726 5.19701 5.20039 5.34927 5.43198 5.57224 5.88679 6.12631 6.53126 6.58943 6.77653 6.83797 7.32236 8.88202 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.005678 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.846750 B = 4930.111544 C = 7006.320443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.193 3.807 3 H 0.017 0.983 4 C -0.497 4.497 5 H 0.042 0.958 6 C 0.027 3.973 7 N -0.938 5.938 8 Si 0.923 3.077 9 H -0.261 1.261 10 H -0.287 1.287 11 H -0.248 1.248 12 N -0.497 5.497 13 C 0.046 3.954 14 C 0.186 3.814 15 C -0.135 4.135 16 C -0.068 4.068 17 C 0.225 3.775 18 N -0.276 5.276 19 N -0.042 5.042 20 N -0.184 5.184 21 H 0.501 0.499 22 N -0.273 5.273 23 S 0.371 5.629 24 C -0.192 4.192 25 N 0.066 4.934 26 O -0.143 6.143 27 O -0.176 6.176 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.267 0.733 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 13.167 22.863 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.088 3.912 3 H 0.035 0.965 4 C -0.536 4.536 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.577 5.577 8 Si 0.747 3.253 9 H -0.186 1.186 10 H -0.213 1.213 11 H -0.171 1.171 12 N -0.219 5.219 13 C -0.100 4.100 14 C 0.074 3.926 15 C -0.172 4.172 16 C -0.192 4.192 17 C -0.056 4.056 18 N -0.149 5.149 19 N -0.037 5.037 20 N -0.037 5.037 21 H 0.361 0.639 22 N -0.127 5.127 23 S 0.637 5.363 24 C -0.396 4.396 25 N 0.584 4.416 26 O -0.361 6.361 27 O -0.387 6.387 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.714 13.840 24.111 28.048 hybrid contribution 0.869 0.783 -1.721 2.081 sum -2.845 14.623 22.390 26.893 Atomic orbital electron populations 1.21881 0.96849 1.00890 0.99167 1.19699 0.92922 0.91920 0.86698 0.96537 1.20838 1.42996 0.94360 0.95372 0.93930 1.25695 0.94195 1.02592 0.94756 1.70017 1.47321 1.37777 1.02585 0.86107 0.80261 0.81064 0.77900 1.18581 1.21268 1.17150 1.60324 1.12519 1.50360 0.98737 1.22241 0.84000 1.00602 1.03155 1.18099 0.91814 0.90543 0.92120 1.20723 1.03613 0.95243 0.97634 1.21432 1.05057 0.93571 0.99104 1.22083 0.98700 0.94298 0.90548 1.76286 1.19053 0.96535 1.23035 1.78962 1.10225 1.20015 0.94513 1.47797 1.29896 1.07366 1.18609 0.63855 1.74990 1.21969 0.96801 1.18971 1.84216 1.45324 0.93561 1.13159 1.26383 1.16173 0.88877 1.08142 1.42519 0.98278 1.01113 0.99650 1.94736 1.60093 1.57602 1.23628 1.94467 1.36119 1.75010 1.33113 0.93649 0.94529 0.92905 0.92326 0.91186 0.90624 0.94490 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 9.15 71.98 0.66 -4.86 16 2 C 0.19 8.65 1.54 44.17 0.07 8.71 16 3 H 0.02 0.74 4.60 -2.39 -0.01 0.73 16 4 C -0.50 -27.07 7.39 25.60 0.19 -26.88 16 5 H 0.04 2.67 8.05 -2.91 -0.02 2.64 16 6 C 0.03 1.47 5.47 84.65 0.46 1.94 16 7 N -0.94 -56.40 13.96 21.45 0.30 -56.10 16 8 Si 0.92 41.65 26.99 68.60 1.85 43.50 16 9 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.25 -10.38 6.82 99.48 0.68 -9.71 16 12 N -0.50 -20.03 3.31 -704.35 -2.33 -22.36 16 13 C 0.05 1.73 9.16 127.69 1.17 2.90 16 14 C 0.19 6.20 3.12 36.76 0.11 6.31 16 15 C -0.14 -3.80 8.76 21.50 0.19 -3.61 16 16 C -0.07 -1.58 6.44 24.04 0.15 -1.43 16 17 C 0.22 4.74 8.16 137.11 1.12 5.86 16 18 N -0.28 -6.35 12.51 -52.41 -0.66 -7.01 16 19 N -0.04 -0.72 13.46 37.02 0.50 -0.22 16 20 N -0.18 -1.82 7.90 37.02 0.29 -1.52 16 21 H 0.50 -0.55 8.96 -347.50 -3.12 -3.67 16 22 N -0.27 -4.20 12.41 -52.36 -0.65 -4.85 16 23 S 0.37 8.00 23.10 -56.49 -1.31 6.69 16 24 C -0.19 -6.04 7.52 80.92 0.61 -5.43 16 25 N 0.07 2.42 4.46 -47.70 -0.21 2.21 16 26 O -0.14 -6.04 17.86 18.88 0.34 -5.71 16 27 O -0.18 -6.06 19.08 18.89 0.36 -5.70 16 28 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.36 7.05 -2.39 -0.02 1.34 16 30 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 3.25 6.82 -2.39 -0.02 3.24 16 34 H 0.04 1.24 7.66 -2.39 -0.02 1.22 16 35 H 0.17 4.78 7.63 -2.91 -0.02 4.76 16 Total: -1.00 -70.20 326.28 1.26 -68.94 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -1.96 Total: -1.38 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 4.73 Total: -16.49 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -2.76 Total: -89.86 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.70 Total: -11.41 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.85 Total: 43.50 kcal Atomic # 16 Polarization: 8.00 SS G_CDS: -1.31 Total: 6.69 kcal Total: -70.20 1.26 -68.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603443503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.262 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds