Wall clock time and date at job start Tue Mar 31 2020 13:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 H 1.08997 * 109.46751 * 54.99894 * 3 2 1 5 5 C 1.50691 * 109.47093 * 174.99806 * 3 2 1 6 6 H 1.08010 * 119.99857 * 120.00167 * 5 3 2 7 7 C 1.37874 * 120.00652 * 300.00190 * 5 3 2 8 8 N 1.31521 * 119.99652 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00502 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46827 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47297 * 119.99689 * 9 7 5 12 12 H 1.48496 * 109.46749 * 239.99618 * 9 7 5 13 13 N 1.46499 * 109.47067 * 295.00246 * 3 2 1 14 14 C 1.40755 * 120.00083 * 84.99752 * 13 3 2 15 15 C 1.38325 * 122.54475 * 359.97438 * 14 13 3 16 16 C 1.34784 * 114.67244 * 180.02562 * 15 14 13 17 17 C 1.47900 * 125.21621 * 180.02562 * 16 15 14 18 18 N 1.34206 * 126.70416 * 359.68034 * 17 16 15 19 19 N 1.28991 * 107.25211 * 179.83569 * 18 17 16 20 20 N 1.28719 * 108.98964 * 0.43721 * 19 18 17 21 21 H 0.97000 * 125.31389 * 179.74019 * 20 19 18 22 22 N 1.28866 * 109.37015 * 359.72460 * 20 19 18 23 23 S 1.75860 * 109.56275 * 359.75557 * 16 15 14 24 24 C 1.33984 * 122.53873 * 180.02562 * 14 13 3 25 25 N 1.48226 * 125.11817 * 359.95636 * 24 14 13 26 26 O 1.21803 * 119.99871 * 359.97438 * 25 24 14 27 27 O 1.21799 * 119.99926 * 179.72825 * 25 24 14 28 28 H 1.08999 * 109.46685 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46904 * 300.00280 * 1 2 3 30 30 H 1.08996 * 109.46996 * 60.00278 * 1 2 3 31 31 H 1.08998 * 109.47634 * 239.99866 * 2 1 3 32 32 H 1.09001 * 109.47425 * 119.99913 * 2 1 3 33 33 H 0.97001 * 119.99726 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99933 * 264.99809 * 13 3 2 35 35 H 1.07997 * 122.66236 * 0.04032 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8813 1.3818 10 1 6.5988 1.5463 0.1942 11 1 6.3991 1.6167 2.6102 12 1 6.4970 -0.5175 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.3811 2.6896 -1.3720 15 6 -0.5430 2.6833 -0.3428 16 6 -1.7092 3.2949 -0.6300 17 6 -2.8551 3.4245 0.2961 18 7 -2.9276 2.9585 1.5525 19 7 -4.0877 3.2822 2.0143 20 7 -4.7390 3.9167 1.1031 21 1 -5.6391 4.2658 1.1975 22 7 -4.0084 4.0160 0.0462 23 16 -1.6564 3.9220 -2.2722 24 6 -0.0260 3.3011 -2.4925 25 7 0.7791 3.4392 -3.7293 26 8 1.9050 2.9769 -3.7779 27 8 0.3132 4.0110 -4.6986 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0604 2.9503 34 1 2.2719 2.1232 -1.9978 35 1 -0.3456 2.2249 0.6150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604013180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:59 Heat of formation + Delta-G solvation = 159.373212 kcal Electronic energy + Delta-G solvation = -24964.159332 eV Core-core repulsion = 21130.796202 eV Total energy + Delta-G solvation = -3833.363130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.73184 -41.52864 -39.26393 -36.03551 -35.71479 -34.58854 -33.82893 -32.31910 -31.50326 -29.72664 -27.38670 -26.04985 -24.92862 -23.98767 -23.33249 -22.33758 -20.79486 -19.87529 -19.52746 -18.60319 -17.82882 -17.43802 -17.15378 -17.06844 -16.21552 -15.46960 -15.34389 -14.46637 -14.38501 -14.21356 -14.11181 -13.09275 -12.89960 -12.67626 -12.32902 -12.08031 -11.68076 -11.57011 -11.48500 -11.40181 -11.17842 -11.08508 -11.02674 -10.96333 -10.75236 -10.74529 -10.49869 -10.31317 -9.95065 -9.57134 -9.22378 -8.97271 -8.62787 -7.21280 -6.32719 -4.42274 -0.14097 0.81649 0.86585 1.29001 1.63199 1.91840 2.08036 2.15423 2.78519 3.16544 3.24769 3.26133 3.30629 3.91346 4.05929 4.26409 4.83031 4.89770 5.00478 5.07794 5.35181 5.59831 5.82554 5.97220 6.05823 6.11734 6.19432 6.57494 6.66911 6.76886 6.88959 7.04247 7.45651 7.51813 7.72953 7.83672 7.87801 8.11415 8.24979 8.63708 9.25893 10.72896 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.004770 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.593491 B = 5868.414664 C = 7831.892269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C 0.258 3.742 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.068 0.932 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.905 3.095 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.650 5.650 14 C 0.303 3.697 15 C -0.111 4.111 16 C -0.065 4.065 17 C 0.245 3.755 18 N -0.244 5.244 19 N -0.043 5.043 20 N -0.223 5.223 21 H 0.477 0.523 22 N -0.284 5.284 23 S 0.235 5.765 24 C -0.301 4.301 25 N 0.100 4.900 26 O -0.199 6.199 27 O -0.199 6.199 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.267 0.733 34 H 0.417 0.583 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 5.296 -1.505 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.157 3.843 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.086 0.914 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.732 3.268 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.276 5.276 14 C 0.172 3.828 15 C -0.151 4.151 16 C -0.188 4.188 17 C -0.036 4.036 18 N -0.118 5.118 19 N -0.038 5.038 20 N -0.070 5.070 21 H 0.332 0.668 22 N -0.137 5.137 23 S 0.493 5.507 24 C -0.515 4.515 25 N 0.602 4.398 26 O -0.400 6.400 27 O -0.404 6.404 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.259 0.741 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.917 5.721 -1.036 17.888 hybrid contribution 1.985 -0.544 0.133 2.062 sum -14.932 5.177 -0.903 15.830 Atomic orbital electron populations 1.22202 0.98994 1.00246 0.99990 1.22065 0.92116 0.99450 1.03713 1.19256 0.96040 0.89407 0.79642 0.93221 1.21164 0.89794 1.39703 1.06840 0.91358 1.24849 0.99119 0.94261 0.95061 1.69851 1.35435 1.37315 1.09357 0.86317 0.84150 0.77991 0.78351 1.19437 1.20731 1.20682 1.46817 1.09895 1.51138 1.19734 1.16731 0.88461 0.87979 0.89665 1.20313 0.90803 1.02037 1.01972 1.21143 0.93977 1.05943 0.97718 1.22240 0.91664 0.98143 0.91593 1.76305 1.09327 1.18645 1.07536 1.78992 1.00200 1.08250 1.16390 1.47705 1.17245 1.36368 1.05648 0.66780 1.75037 1.04042 1.22520 1.12085 1.84203 1.05229 1.57421 1.03861 1.24657 1.02582 1.31904 0.92321 1.42098 0.99771 0.97608 1.00297 1.94418 1.04430 1.52110 1.89020 1.94483 1.75088 1.44334 1.26468 0.94014 0.92782 0.94304 0.93887 0.87179 0.92277 0.74091 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.25 37.16 0.31 -2.49 16 2 C -0.13 -2.83 5.45 -26.73 -0.15 -2.98 16 3 C 0.26 5.69 2.21 -69.08 -0.15 5.53 16 4 H 0.05 1.16 6.76 -51.93 -0.35 0.81 16 5 C -0.54 -13.26 8.73 -34.45 -0.30 -13.56 16 6 H 0.07 1.70 7.74 -52.48 -0.41 1.29 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -22.50 11.30 55.43 0.63 -21.87 16 9 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.65 -12.97 5.16 -54.40 -0.28 -13.25 16 14 C 0.30 5.41 5.37 -85.22 -0.46 4.95 16 15 C -0.11 -1.79 6.82 -40.77 -0.28 -2.07 16 16 C -0.07 -0.93 6.44 -36.85 -0.24 -1.17 16 17 C 0.24 3.24 8.16 -156.25 -1.27 1.96 16 18 N -0.24 -3.37 12.51 32.08 0.40 -2.97 16 19 N -0.04 -0.47 13.47 60.35 0.81 0.34 16 20 N -0.22 -1.75 7.90 60.35 0.48 -1.27 16 21 H 0.48 1.19 8.96 -340.34 -3.05 -1.87 16 22 N -0.28 -3.05 12.41 32.10 0.40 -2.65 16 23 S 0.23 3.30 23.10 -107.50 -2.48 0.81 16 24 C -0.30 -5.28 7.52 -11.01 -0.08 -5.36 16 25 N 0.10 1.93 4.46 33.58 0.15 2.08 16 26 O -0.20 -4.03 16.54 -29.46 -0.49 -4.52 16 27 O -0.20 -3.81 19.08 -29.46 -0.56 -4.37 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.93 6.42 -51.93 -0.33 0.60 16 30 H 0.04 0.67 5.39 -51.93 -0.28 0.39 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.11 2.59 5.95 -51.93 -0.31 2.28 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.42 8.54 5.88 -40.82 -0.24 8.30 16 35 H 0.18 3.03 4.61 -52.49 -0.24 2.78 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -28.03 317.31 -9.10 -37.12 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.19 Total: 4.53 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.72 Total: -13.50 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 2.58 Total: -39.59 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -1.05 Total: -8.90 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.48 Total: 0.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.03 -9.10 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.497 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds